RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 DSC1Q08554 894 aa11.2□□□□□ -0.62
VPS4B-204ENST00000589604 TMEM132DQ14C87 1099 aa11.2□□□□□ -0.62
VPS4B-204ENST00000589604 RAB30Q15771 203 aa11.2□□□□□ -0.62
VPS4B-204ENST00000589604 ENOSF1Q7L5Y1 443 aa11.2□□□□□ -0.62
VPS4B-204ENST00000589604 NT5DC4Q86YG4 428 aa11.2□□□□□ -0.62
VPS4B-204ENST00000589604 ABI1Q8IZP0 508 aa11.2□□□□□ -0.62
VPS4B-204ENST00000589604 FIBCD1Q8N539 461 aa11.2□□□□□ -0.62
VPS4B-204ENST00000589604 TIFAQ96CG3 184 aa11.2□□□□□ -0.62
VPS4B-204ENST00000589604 POM121Q96HA1 1249 aa11.2□□□□□ -0.62
VPS4B-204ENST00000589604 UBN1Q9NPG3 1134 aa11.2□□□□□ -0.62
VPS4B-204ENST00000589604 TUBGCP4Q9UGJ1 667 aa11.2□□□□□ -0.62
VPS4B-204ENST00000589604 TFR2Q9UP52 801 aa11.2□□□□□ -0.62
VPS4B-204ENST00000589604 CNTN6Q9UQ52 1028 aa11.2□□□□□ -0.62
VPS4B-204ENST00000589604 DERAQ9Y315 318 aa11.2□□□□□ -0.62
VPS4B-204ENST00000589604 BZW2Q9Y6E2 419 aaKnown RBP11.2□□□□□ -0.62
VPS4B-204ENST00000589604 PLXNA4Q9HCM2 1894 aa11.19□□□□□ -0.62
VPS4B-204ENST00000589604 RFXAPO00287 272 aa11.19□□□□□ -0.62
VPS4B-204ENST00000589604 DDX3XO00571 662 aaKnown RBP eCLIP11.19□□□□□ -0.622e-6■■□□□ 11.9
VPS4B-204ENST00000589604 ZSCAN12O43309 604 aa11.19□□□□□ -0.62
VPS4B-204ENST00000589604 KCNE1P15382 129 aa11.19□□□□□ -0.62
VPS4B-204ENST00000589604 CHRNB2P17787 502 aa11.19□□□□□ -0.62
VPS4B-204ENST00000589604 SLC11A1P49279 550 aa11.19□□□□□ -0.62
VPS4B-204ENST00000589604 GFPT1Q06210 699 aaPredicted RBP11.19□□□□□ -0.62
VPS4B-204ENST00000589604 CUL2Q13617 745 aa11.19□□□□□ -0.62
VPS4B-204ENST00000589604 SLC18A3Q16572 532 aa11.19□□□□□ -0.62
VPS4B-204ENST00000589604 SGSM1Q2NKQ1 1148 aa11.19□□□□□ -0.62
VPS4B-204ENST00000589604 TDRD12Q587J7 1177 aaKnown RBP11.19□□□□□ -0.62
VPS4B-204ENST00000589604 WDR44Q5JSH3 913 aa11.19□□□□□ -0.62
VPS4B-204ENST00000589604 ZNF662Q6ZS27 426 aa11.19□□□□□ -0.62
VPS4B-204ENST00000589604 COLGALT2Q8IYK4 626 aa11.19□□□□□ -0.62
VPS4B-204ENST00000589604 HACE1Q8IYU2 909 aa11.19□□□□□ -0.62
VPS4B-204ENST00000589604 LRRC43Q8N309 656 aa11.19□□□□□ -0.62
VPS4B-204ENST00000589604 COLGALT1Q8NBJ5 622 aa11.19□□□□□ -0.62
VPS4B-204ENST00000589604 LNX1Q8TBB1 728 aaPredicted RBP11.19□□□□□ -0.62
VPS4B-204ENST00000589604 KIF12Q96FN5 646 aa11.19□□□□□ -0.62
VPS4B-204ENST00000589604 LACRTQ9GZZ8 138 aa11.19□□□□□ -0.62
VPS4B-204ENST00000589604 VRTNQ9H8Y1 702 aa11.19□□□□□ -0.62
VPS4B-204ENST00000589604 ACP6Q9NPH0 428 aa11.19□□□□□ -0.62
VPS4B-204ENST00000589604 MSRAQ9UJ68 235 aa11.19□□□□□ -0.62
VPS4B-204ENST00000589604 NOCTQ9UK39 431 aaKnown RBP11.19□□□□□ -0.62
VPS4B-204ENST00000589604 PCDHB8Q9UN66 801 aa11.19□□□□□ -0.62
VPS4B-204ENST00000589604 COL4A4P53420 1690 aaPredicted RBP11.19□□□□□ -0.62
VPS4B-204ENST00000589604 PPEF2O14830 753 aa11.18□□□□□ -0.62
VPS4B-204ENST00000589604 FANCGO15287 622 aa11.18□□□□□ -0.62
VPS4B-204ENST00000589604 CYP26A1O43174 497 aa11.18□□□□□ -0.62
VPS4B-204ENST00000589604 ITGB3P05106 788 aa11.18□□□□□ -0.62
VPS4B-204ENST00000589604 ITGB1P05556 798 aa11.18□□□□□ -0.62
VPS4B-204ENST00000589604 YARSP54577 528 aaKnown RBP11.18□□□□□ -0.62
VPS4B-204ENST00000589604 BCAR1P56945 870 aa11.18□□□□□ -0.62
VPS4B-204ENST00000589604 ERVK-21P61565 698 aa11.18□□□□□ -0.62
VPS4B-204ENST00000589604 PPP2R2DQ66LE6 453 aa11.18□□□□□ -0.62
VPS4B-204ENST00000589604 CD300LGQ6UXG3 332 aa11.18□□□□□ -0.62
VPS4B-204ENST00000589604 Q7L0L9 218 aa11.18□□□□□ -0.62
VPS4B-204ENST00000589604 URGCPQ8TCY9 931 aa11.18□□□□□ -0.62
VPS4B-204ENST00000589604 EPS8L1Q8TE68 723 aa11.18□□□□□ -0.62
VPS4B-204ENST00000589604 SLC20A1Q8WUM9 679 aa11.18□□□□□ -0.62
VPS4B-204ENST00000589604 DDX1Q92499 740 aaKnown RBP11.18□□□□□ -0.62
VPS4B-204ENST00000589604 JAKMIP2Q96AA8 810 aa11.18□□□□□ -0.62
VPS4B-204ENST00000589604 FAM81BQ96LP2 452 aa11.18□□□□□ -0.62
VPS4B-204ENST00000589604 VN1R3Q9BXE9 311 aa11.18□□□□□ -0.62
VPS4B-204ENST00000589604 DPP3Q9NY33 737 aa11.18□□□□□ -0.62
VPS4B-204ENST00000589604 ADAMTS1Q9UHI8 967 aa11.18□□□□□ -0.62
VPS4B-204ENST00000589604 PCDHA13Q9Y5I0 950 aa11.18□□□□□ -0.62
VPS4B-204ENST00000589604 ATG2AQ2TAZ0 1938 aa11.18□□□□□ -0.62
VPS4B-204ENST00000589604 ANO9A1A5B4 782 aa11.17□□□□□ -0.62
VPS4B-204ENST00000589604 CASTOR2A6NHX0 329 aa11.17□□□□□ -0.62
VPS4B-204ENST00000589604 CCP110O43303 1012 aa11.17□□□□□ -0.62
VPS4B-204ENST00000589604 AKR1B10O60218 316 aa11.17□□□□□ -0.62
VPS4B-204ENST00000589604 STAU1O95793 577 aaKnown RBP11.17□□□□□ -0.62
VPS4B-204ENST00000589604 CALCAP01258 141 aa11.17□□□□□ -0.62
VPS4B-204ENST00000589604 THP07101 528 aa11.17□□□□□ -0.62
VPS4B-204ENST00000589604 GALTP07902 379 aa11.17□□□□□ -0.62
VPS4B-204ENST00000589604 DNAJB1P25685 340 aa11.17□□□□□ -0.62
VPS4B-204ENST00000589604 ANXA13P27216 316 aa11.17□□□□□ -0.62
VPS4B-204ENST00000589604 BMPR1AP36894 532 aa11.17□□□□□ -0.62
VPS4B-204ENST00000589604 ASPAP45381 313 aa11.17□□□□□ -0.62
VPS4B-204ENST00000589604 ZNF132P52740 706 aa11.17□□□□□ -0.62
VPS4B-204ENST00000589604 RNASELQ05823 741 aaKnown RBP11.17□□□□□ -0.62
VPS4B-204ENST00000589604 GRIK3Q13003 919 aa11.17□□□□□ -0.62
VPS4B-204ENST00000589604 TRPC3Q13507 836 aa11.17□□□□□ -0.62
VPS4B-204ENST00000589604 KCNT2Q6UVM3 1135 aa11.17□□□□□ -0.62
VPS4B-204ENST00000589604 NOP9Q86U38 636 aaKnown RBP11.17□□□□□ -0.62
VPS4B-204ENST00000589604 SLC47A2Q86VL8 602 aa11.17□□□□□ -0.62
VPS4B-204ENST00000589604 PALB2Q86YC2 1186 aa11.17□□□□□ -0.62
VPS4B-204ENST00000589604 C3orf58Q8NDZ4 430 aa11.17□□□□□ -0.62
VPS4B-204ENST00000589604 TAF4BQ92750 862 aa11.17□□□□□ -0.62
VPS4B-204ENST00000589604 C16orf45Q96MC5 204 aaPredicted RBP11.17□□□□□ -0.62
VPS4B-204ENST00000589604 TGS1Q96RS0 853 aaKnown RBP11.17□□□□□ -0.62
VPS4B-204ENST00000589604 RPS6KC1Q96S38 1066 aa11.17□□□□□ -0.62
VPS4B-204ENST00000589604 TSPAN18Q96SJ8 248 aa11.17□□□□□ -0.62
VPS4B-204ENST00000589604 MRPL9Q9BYD2 267 aaKnown RBP11.17□□□□□ -0.62
VPS4B-204ENST00000589604 BCO2Q9BYV7 579 aa11.17□□□□□ -0.62
VPS4B-204ENST00000589604 IRX2Q9BZI1 471 aaPredicted RBP11.17□□□□□ -0.62
VPS4B-204ENST00000589604 ZNF576Q9H609 170 aa11.17□□□□□ -0.62
VPS4B-204ENST00000589604 SLC28A3Q9HAS3 691 aa11.17□□□□□ -0.62
VPS4B-204ENST00000589604 MARCH5Q9NX47 278 aa11.17□□□□□ -0.62
VPS4B-204ENST00000589604 TRIM10Q9UDY6 481 aa11.17□□□□□ -0.62
VPS4B-204ENST00000589604 ITGA11Q9UKX5 1188 aa11.17□□□□□ -0.62
VPS4B-204ENST00000589604 POLIQ9UNA4 740 aa11.17□□□□□ -0.62
VPS4B-204ENST00000589604 NRP1O14786 923 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms