RNA–Protein interactions for RNA: ENST00000584112.1

CCDC47-206, Transcript of coiled-coil domain containing 47, humanhuman

TSL 2

Gene CCDC47, Length 588 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-206ENST00000584112 CDH7Q9ULB5 785 aa12.15□□□□□ -0.46
CCDC47-206ENST00000584112 ODF2LQ9ULJ1 636 aa12.15□□□□□ -0.46
CCDC47-206ENST00000584112 SMIM28A0A1B0GU29 152 aa12.14□□□□□ -0.47
CCDC47-206ENST00000584112 VPS37CA5D8V6 355 aaPredicted RBP12.14□□□□□ -0.47
CCDC47-206ENST00000584112 TOM1L1O75674 476 aa12.14□□□□□ -0.47
CCDC47-206ENST00000584112 B3GAT3O94766 335 aa12.14□□□□□ -0.47
CCDC47-206ENST00000584112 CAVIN2O95810 425 aa12.14□□□□□ -0.47
CCDC47-206ENST00000584112 CHRNB1P11230 501 aa12.14□□□□□ -0.47
CCDC47-206ENST00000584112 RPL17P18621 184 aaKnown RBP12.14□□□□□ -0.47
CCDC47-206ENST00000584112 SCP2P22307 547 aa12.14□□□□□ -0.47
CCDC47-206ENST00000584112 LONP1P36776 959 aaKnown RBP12.14□□□□□ -0.47
CCDC47-206ENST00000584112 CLCNKBP51801 687 aa12.14□□□□□ -0.47
CCDC47-206ENST00000584112 OSTNP61366 133 aa12.14□□□□□ -0.47
CCDC47-206ENST00000584112 CREB5Q02930 508 aa12.14□□□□□ -0.47
CCDC47-206ENST00000584112 NOLC1Q14978 699 aaKnown RBP eCLIP12.14□□□□□ -0.47
CCDC47-206ENST00000584112 UPP1Q16831 310 aa12.14□□□□□ -0.47
CCDC47-206ENST00000584112 XKR4Q5GH76 650 aa12.14□□□□□ -0.47
CCDC47-206ENST00000584112 ALKAL1Q6UXT8 129 aa12.14□□□□□ -0.47
CCDC47-206ENST00000584112 ZPBP2Q6X784 338 aa12.14□□□□□ -0.47
CCDC47-206ENST00000584112 Q6ZS52 159 aa12.14□□□□□ -0.47
CCDC47-206ENST00000584112 MTSS1LQ765P7 747 aa12.14□□□□□ -0.47
CCDC47-206ENST00000584112 SPEM1Q8N4L4 309 aa12.14□□□□□ -0.47
CCDC47-206ENST00000584112 CEP120Q8N960 986 aa12.14□□□□□ -0.47
CCDC47-206ENST00000584112 TMEM161BQ8NDZ6 487 aa12.14□□□□□ -0.47
CCDC47-206ENST00000584112 RASSF8Q8NHQ8 419 aa12.14□□□□□ -0.47
CCDC47-206ENST00000584112 LNX1Q8TBB1 728 aaPredicted RBP12.14□□□□□ -0.47
CCDC47-206ENST00000584112 DDX27Q96GQ7 796 aaKnown RBP12.14□□□□□ -0.47
CCDC47-206ENST00000584112 PRKD2Q9BZL6 878 aa12.14□□□□□ -0.47
CCDC47-206ENST00000584112 CXCL16Q9H2A7 254 aa12.14□□□□□ -0.47
CCDC47-206ENST00000584112 FBXW11Q9UKB1 542 aa12.14□□□□□ -0.47
CCDC47-206ENST00000584112 FLNCQ14315 2725 aa12.14□□□□□ -0.47
CCDC47-206ENST00000584112 ATG2BQ96BY7 2078 aa12.14□□□□□ -0.47
CCDC47-206ENST00000584112 COL5A1P20908 1838 aaPredicted RBP12.14□□□□□ -0.47
CCDC47-206ENST00000584112 SCN1AP35498 2009 aa12.13□□□□□ -0.47
CCDC47-206ENST00000584112 ABCA7Q8IZY2 2146 aa12.13□□□□□ -0.47
CCDC47-206ENST00000584112 GOLGA4Q13439 2230 aaKnown RBP12.13□□□□□ -0.47
CCDC47-206ENST00000584112 ABLIM1O14639 778 aa12.13□□□□□ -0.47
CCDC47-206ENST00000584112 ZMYND10O75800 440 aa12.13□□□□□ -0.47
CCDC47-206ENST00000584112 HNRNPA1P09651 372 aaKnown RBP eCLIP12.13□□□□□ -0.47
CCDC47-206ENST00000584112 MAPTP10636 758 aaKnown RBP12.13□□□□□ -0.47
CCDC47-206ENST00000584112 KCNE1P15382 129 aa12.13□□□□□ -0.47
CCDC47-206ENST00000584112 FGFR3P22607 806 aa12.13□□□□□ -0.47
CCDC47-206ENST00000584112 ABCD1P33897 745 aa12.13□□□□□ -0.47
CCDC47-206ENST00000584112 CCR10P46092 362 aa12.13□□□□□ -0.47
CCDC47-206ENST00000584112 SF3A1Q15459 793 aaKnown RBP12.13□□□□□ -0.47
CCDC47-206ENST00000584112 PCSK4Q6UW60 755 aa12.13□□□□□ -0.47
CCDC47-206ENST00000584112 ANKS3Q6ZW76 656 aa12.13□□□□□ -0.47
CCDC47-206ENST00000584112 GPBP1Q86WP2 473 aa12.13□□□□□ -0.47
CCDC47-206ENST00000584112 FGF13Q92913 245 aa12.13□□□□□ -0.47
CCDC47-206ENST00000584112 CLSTN3Q9BQT9 956 aa12.13□□□□□ -0.47
CCDC47-206ENST00000584112 CNTN3Q9P232 1028 aa12.13□□□□□ -0.47
CCDC47-206ENST00000584112 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.13□□□□□ -0.47
CCDC47-206ENST00000584112 COL4A2P08572 1712 aa12.12□□□□□ -0.47
CCDC47-206ENST00000584112 PATE3B3GLJ2 98 aa12.12□□□□□ -0.47
CCDC47-206ENST00000584112 CLDN3O15551 220 aa12.12□□□□□ -0.47
CCDC47-206ENST00000584112 FAM13AO94988 1023 aa12.12□□□□□ -0.47
CCDC47-206ENST00000584112 PAPSS2O95340 614 aaPredicted RBP12.12□□□□□ -0.47
CCDC47-206ENST00000584112 KRT18P05783 430 aaKnown RBP12.12□□□□□ -0.47
CCDC47-206ENST00000584112 CCDC192P0DO97 292 aa12.12□□□□□ -0.47
CCDC47-206ENST00000584112 HARSP12081 509 aaKnown RBP12.12□□□□□ -0.47
CCDC47-206ENST00000584112 HOXA9P31269 272 aa12.12□□□□□ -0.47
CCDC47-206ENST00000584112 MATR3P43243 847 aaKnown RBP eCLIP12.12□□□□□ -0.47
CCDC47-206ENST00000584112 NCKAP1LP55160 1127 aa12.12□□□□□ -0.47
CCDC47-206ENST00000584112 RAB33AQ14088 237 aa12.12□□□□□ -0.47
CCDC47-206ENST00000584112 KYAT1Q16773 422 aa12.12□□□□□ -0.47
CCDC47-206ENST00000584112 ARSHQ5FYA8 562 aa12.12□□□□□ -0.47
CCDC47-206ENST00000584112 PPM1LQ5SGD2 360 aa12.12□□□□□ -0.47
CCDC47-206ENST00000584112 CCNI2Q6ZMN8 369 aaPredicted RBP12.12□□□□□ -0.47
CCDC47-206ENST00000584112 RTL10Q7L3V2 364 aa12.12□□□□□ -0.47
CCDC47-206ENST00000584112 GRASPQ7Z6J2 395 aaPredicted RBP12.12□□□□□ -0.47
CCDC47-206ENST00000584112 ITFG1Q8TB96 612 aa12.12□□□□□ -0.47
CCDC47-206ENST00000584112 FAM3CQ92520 227 aa12.12□□□□□ -0.47
CCDC47-206ENST00000584112 KCNN1Q92952 543 aa12.12□□□□□ -0.47
CCDC47-206ENST00000584112 BICD1Q96G01 975 aa12.12□□□□□ -0.47
CCDC47-206ENST00000584112 REEP2Q9BRK0 252 aa12.12□□□□□ -0.47
CCDC47-206ENST00000584112 SLC32A1Q9H598 525 aa12.12□□□□□ -0.47
CCDC47-206ENST00000584112 GOLGA2P5Q9HBQ8 144 aa12.12□□□□□ -0.47
CCDC47-206ENST00000584112 MTRRQ9UBK8 725 aa12.12□□□□□ -0.47
CCDC47-206ENST00000584112 ZFP37Q9Y6Q3 630 aaPredicted RBP12.12□□□□□ -0.47
CCDC47-206ENST00000584112 ZNF638Q14966 1978 aaKnown RBP12.12□□□□□ -0.47
CCDC47-206ENST00000584112 UTP20O75691 2785 aaKnown RBP12.12□□□□□ -0.47
CCDC47-206ENST00000584112 TSC2P49815 1807 aa12.11□□□□□ -0.47
CCDC47-206ENST00000584112 PTPRBP23467 1997 aa12.11□□□□□ -0.47
CCDC47-206ENST00000584112 A0A087WV48 116 aa12.11□□□□□ -0.47
CCDC47-206ENST00000584112 NPHP3-ACAD11A0A0J9YXS1 232 aa12.11□□□□□ -0.47
CCDC47-206ENST00000584112 H0Y626 953 aa12.11□□□□□ -0.47
CCDC47-206ENST00000584112 PODXLO00592 558 aa12.11□□□□□ -0.47
CCDC47-206ENST00000584112 MAN2B1O00754 1011 aa12.11□□□□□ -0.47
CCDC47-206ENST00000584112 XYLBO75191 536 aa12.11□□□□□ -0.47
CCDC47-206ENST00000584112 TRIM16O95361 564 aa12.11□□□□□ -0.47
CCDC47-206ENST00000584112 C8AP07357 584 aa12.11□□□□□ -0.47
CCDC47-206ENST00000584112 PLCG1P19174 1290 aa12.11□□□□□ -0.47
CCDC47-206ENST00000584112 ITPKBP27987 946 aa12.11□□□□□ -0.47
CCDC47-206ENST00000584112 TKTP29401 623 aaKnown RBP12.11□□□□□ -0.47
CCDC47-206ENST00000584112 RPL9P32969 192 aaKnown RBP12.11□□□□□ -0.47
CCDC47-206ENST00000584112 OR1D2P34982 312 aa12.11□□□□□ -0.47
CCDC47-206ENST00000584112 MCL1Q07820 350 aa12.11□□□□□ -0.47
CCDC47-206ENST00000584112 DHX8Q14562 1220 aaKnown RBP12.11□□□□□ -0.47
CCDC47-206ENST00000584112 UVSSAQ2YD98 709 aa12.11□□□□□ -0.47
CCDC47-206ENST00000584112 PLK5Q496M5 336 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms