RNA–Protein interactions for RNA: ENST00000580713.1

TOP3A-210, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 2

Gene TOP3A, Length 474 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-210ENST00000580713 TAF4O00268 1085 aa11.72□□□□□ -0.53
TOP3A-210ENST00000580713 ACKR2O00590 384 aa11.72□□□□□ -0.53
TOP3A-210ENST00000580713 KHNYNO15037 678 aaKnown RBP11.72□□□□□ -0.53
TOP3A-210ENST00000580713 HYAL3O43820 417 aaPredicted RBP11.72□□□□□ -0.53
TOP3A-210ENST00000580713 CSRP1P21291 193 aaKnown RBP11.72□□□□□ -0.53
TOP3A-210ENST00000580713 MARCKSP29966 332 aaPredicted RBP11.72□□□□□ -0.53
TOP3A-210ENST00000580713 EPHB3P54753 998 aa11.72□□□□□ -0.53
TOP3A-210ENST00000580713 SOX4Q06945 474 aaPredicted RBP11.72□□□□□ -0.53
TOP3A-210ENST00000580713 KARSQ15046 597 aaKnown RBP11.72□□□□□ -0.53
TOP3A-210ENST00000580713 SAFBQ15424 915 aaKnown RBP eCLIP11.72□□□□□ -0.53
TOP3A-210ENST00000580713 ITPRIPL2Q3MIP1 535 aa11.72□□□□□ -0.53
TOP3A-210ENST00000580713 GPR158Q5T848 1215 aa11.72□□□□□ -0.53
TOP3A-210ENST00000580713 MCTP1Q6DN14 999 aa11.72□□□□□ -0.53
TOP3A-210ENST00000580713 PIK3AP1Q6ZUJ8 805 aa11.72□□□□□ -0.53
TOP3A-210ENST00000580713 APBB1IPQ7Z5R6 666 aaPredicted RBP11.72□□□□□ -0.53
TOP3A-210ENST00000580713 CAMKK1Q8N5S9 505 aa11.72□□□□□ -0.53
TOP3A-210ENST00000580713 MCPH1Q8NEM0 835 aa11.72□□□□□ -0.53
TOP3A-210ENST00000580713 DEFB124Q8NES8 71 aa11.72□□□□□ -0.53
TOP3A-210ENST00000580713 APPL2Q8NEU8 664 aa11.72□□□□□ -0.53
TOP3A-210ENST00000580713 LRRC3BQ96PB8 259 aa11.72□□□□□ -0.53
TOP3A-210ENST00000580713 HS3ST6Q96QI5 342 aa11.72□□□□□ -0.53
TOP3A-210ENST00000580713 HSD17B14Q9BPX1 270 aa11.72□□□□□ -0.53
TOP3A-210ENST00000580713 ATXN3LQ9H3M9 355 aa11.72□□□□□ -0.53
TOP3A-210ENST00000580713 ZSCAN16Q9H4T2 348 aaPredicted RBP11.72□□□□□ -0.53
TOP3A-210ENST00000580713 SLC38A7Q9NVC3 462 aa11.72□□□□□ -0.53
TOP3A-210ENST00000580713 POLR3BQ9NW08 1133 aaPredicted RBP11.72□□□□□ -0.53
TOP3A-210ENST00000580713 THG1LQ9NWX6 298 aaKnown RBP11.72□□□□□ -0.53
TOP3A-210ENST00000580713 MAFFQ9ULX9 164 aa11.72□□□□□ -0.53
TOP3A-210ENST00000580713 PCDHA12Q9UN75 941 aa11.72□□□□□ -0.53
TOP3A-210ENST00000580713 ATP6V1DQ9Y5K8 247 aa11.72□□□□□ -0.53
TOP3A-210ENST00000580713 DSPP15924 2871 aaKnown RBP11.71□□□□□ -0.53
TOP3A-210ENST00000580713 RNF40O75150 1001 aa11.71□□□□□ -0.53
TOP3A-210ENST00000580713 MCM4P33991 863 aa11.71□□□□□ -0.53
TOP3A-210ENST00000580713 ALDH1A3P47895 512 aa11.71□□□□□ -0.53
TOP3A-210ENST00000580713 OSTNP61366 133 aa11.71□□□□□ -0.53
TOP3A-210ENST00000580713 RESTQ13127 1097 aa11.71□□□□□ -0.53
TOP3A-210ENST00000580713 PLD1Q13393 1074 aa11.71□□□□□ -0.53
TOP3A-210ENST00000580713 GNL2Q13823 731 aaKnown RBP11.71□□□□□ -0.53
TOP3A-210ENST00000580713 MRPL58Q14197 206 aaKnown RBP11.71□□□□□ -0.53
TOP3A-210ENST00000580713 ARHGAP15Q53QZ3 475 aa11.71□□□□□ -0.53
TOP3A-210ENST00000580713 ARSIQ5FYB1 569 aa11.71□□□□□ -0.53
TOP3A-210ENST00000580713 ATF7IP2Q5U623 682 aa11.71□□□□□ -0.53
TOP3A-210ENST00000580713 FAM177A1Q8N128 213 aaPredicted RBP11.71□□□□□ -0.53
TOP3A-210ENST00000580713 BPIFB1Q8TDL5 484 aa11.71□□□□□ -0.53
TOP3A-210ENST00000580713 PTCD2Q8WV60 388 aaKnown RBP11.71□□□□□ -0.53
TOP3A-210ENST00000580713 PGLYRP2Q96PD5 576 aa11.71□□□□□ -0.53
TOP3A-210ENST00000580713 CCDC94Q9BW85 323 aaPredicted RBP11.71□□□□□ -0.53
TOP3A-210ENST00000580713 BRMS1Q9HCU9 246 aa11.71□□□□□ -0.53
TOP3A-210ENST00000580713 TOPORSQ9NS56 1045 aaPredicted RBP11.71□□□□□ -0.53
TOP3A-210ENST00000580713 INVSQ9Y283 1065 aa11.71□□□□□ -0.53
TOP3A-210ENST00000580713 NEUROG3Q9Y4Z2 214 aa11.71□□□□□ -0.53
TOP3A-210ENST00000580713 ATG2BQ96BY7 2078 aa11.71□□□□□ -0.54
TOP3A-210ENST00000580713 ZIC2O95409 532 aaPredicted RBP11.7□□□□□ -0.54
TOP3A-210ENST00000580713 EDN1P05305 212 aa11.7□□□□□ -0.54
TOP3A-210ENST00000580713 DGKEP52429 567 aa11.7□□□□□ -0.54
TOP3A-210ENST00000580713 TMEM196Q5HYL7 178 aa11.7□□□□□ -0.54
TOP3A-210ENST00000580713 FSTL4Q6MZW2 842 aa11.7□□□□□ -0.54
TOP3A-210ENST00000580713 C19orf48Q6RUI8 117 aa11.7□□□□□ -0.54
TOP3A-210ENST00000580713 CYP2U1Q7Z449 544 aa11.7□□□□□ -0.54
TOP3A-210ENST00000580713 TMC8Q8IU68 726 aa11.7□□□□□ -0.54
TOP3A-210ENST00000580713 BSNDQ8WZ55 320 aa11.7□□□□□ -0.54
TOP3A-210ENST00000580713 SUSD3Q96L08 255 aa11.7□□□□□ -0.54
TOP3A-210ENST00000580713 GBP4Q96PP9 640 aa11.7□□□□□ -0.54
TOP3A-210ENST00000580713 LRRC3Q9BY71 257 aa11.7□□□□□ -0.54
TOP3A-210ENST00000580713 SLC32A1Q9H598 525 aa11.7□□□□□ -0.54
TOP3A-210ENST00000580713 GKN1Q9NS71 199 aa11.7□□□□□ -0.54
TOP3A-210ENST00000580713 OBP2AQ9NY56 170 aa11.7□□□□□ -0.54
TOP3A-210ENST00000580713 KLK13Q9UKR3 277 aa11.7□□□□□ -0.54
TOP3A-210ENST00000580713 MSRB2Q9Y3D2 182 aa11.7□□□□□ -0.54
TOP3A-210ENST00000580713 AKAP13Q12802 2813 aa11.7□□□□□ -0.54
TOP3A-210ENST00000580713 LAMA1P25391 3075 aa11.7□□□□□ -0.54
TOP3A-210ENST00000580713 CDX4O14627 284 aaPredicted RBP11.69□□□□□ -0.54
TOP3A-210ENST00000580713 PRAMEF12O95522 483 aa11.69□□□□□ -0.54
TOP3A-210ENST00000580713 APBB3O95704 486 aa11.69□□□□□ -0.54
TOP3A-210ENST00000580713 EGFP01133 1207 aa11.69□□□□□ -0.54
TOP3A-210ENST00000580713 XRCC6P12956 609 aaKnown RBP eCLIP11.69□□□□□ -0.54
TOP3A-210ENST00000580713 GABRR2P28476 465 aa11.69□□□□□ -0.54
TOP3A-210ENST00000580713 RPL9P32969 192 aaKnown RBP11.69□□□□□ -0.54
TOP3A-210ENST00000580713 KRT2P35908 639 aa11.69□□□□□ -0.54
TOP3A-210ENST00000580713 NAMPTP43490 491 aa11.69□□□□□ -0.54
TOP3A-210ENST00000580713 DUSP4Q13115 394 aa11.69□□□□□ -0.54
TOP3A-210ENST00000580713 PPP2R5AQ15172 486 aa11.69□□□□□ -0.54
TOP3A-210ENST00000580713 CALCRLQ16602 461 aa11.69□□□□□ -0.54
TOP3A-210ENST00000580713 FOXD4L6Q3SYB3 417 aaPredicted RBP11.69□□□□□ -0.54
TOP3A-210ENST00000580713 NT5DC1Q5TFE4 455 aa11.69□□□□□ -0.54
TOP3A-210ENST00000580713 FOXD4L3Q6VB84 417 aaPredicted RBP11.69□□□□□ -0.54
TOP3A-210ENST00000580713 BRAPQ7Z569 592 aa11.69□□□□□ -0.54
TOP3A-210ENST00000580713 DIS3L2Q8IYB7 885 aaKnown RBP11.69□□□□□ -0.54
TOP3A-210ENST00000580713 CEP120Q8N960 986 aa11.69□□□□□ -0.54
TOP3A-210ENST00000580713 DDX12PQ92771 950 aa11.69□□□□□ -0.54
TOP3A-210ENST00000580713 IFT74Q96LB3 600 aa11.69□□□□□ -0.54
TOP3A-210ENST00000580713 KIFC3Q9BVG8 833 aa11.69□□□□□ -0.54
TOP3A-210ENST00000580713 CCDC113Q9H0I3 377 aa11.69□□□□□ -0.54
TOP3A-210ENST00000580713 DNAJC25Q9H1X3 360 aa11.69□□□□□ -0.54
TOP3A-210ENST00000580713 FOXP1Q9H334 677 aaPredicted RBP11.69□□□□□ -0.54
TOP3A-210ENST00000580713 TTC12Q9H892 705 aaPredicted RBP11.69□□□□□ -0.54
TOP3A-210ENST00000580713 SETXQ7Z333 2677 aaKnown RBP11.68□□□□□ -0.54
TOP3A-210ENST00000580713 EIF4E1BA6NMX2 242 aaKnown RBP11.68□□□□□ -0.54
TOP3A-210ENST00000580713 BTBD18B2RXH4 712 aa11.68□□□□□ -0.54
TOP3A-210ENST00000580713 PATE3B3GLJ2 98 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms