RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 NOP9Q86U38 636 aaKnown RBP16.28■□□□□ 0.2
SS18-215ENST00000580642 METTL23Q86XA0 190 aa16.28■□□□□ 0.2
SS18-215ENST00000580642 ZNF280BQ86YH2 543 aa16.28■□□□□ 0.2
SS18-215ENST00000580642 ADGRF2Q8IZF7 708 aa16.28■□□□□ 0.2
SS18-215ENST00000580642 PDCL2Q8N4E4 241 aa16.28■□□□□ 0.2
SS18-215ENST00000580642 WHAMMQ8TF30 809 aa16.28■□□□□ 0.2
SS18-215ENST00000580642 SLC9A7Q96T83 725 aa16.28■□□□□ 0.2
SS18-215ENST00000580642 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.28■□□□□ 0.2
SS18-215ENST00000580642 SNX25Q9H3E2 840 aa16.28■□□□□ 0.2
SS18-215ENST00000580642 NRDE2Q9H7Z3 1164 aa16.28■□□□□ 0.2
SS18-215ENST00000580642 RC3H2Q9HBD1 1191 aaKnown RBP16.28■□□□□ 0.2
SS18-215ENST00000580642 NAGPAQ9UK23 515 aa16.28■□□□□ 0.2
SS18-215ENST00000580642 NENFQ9UMX5 172 aa16.28■□□□□ 0.2
SS18-215ENST00000580642 PCDHB8Q9UN66 801 aa16.28■□□□□ 0.2
SS18-215ENST00000580642 L1RE1Q9UN81 338 aa16.28■□□□□ 0.2
SS18-215ENST00000580642 STXBP5LQ9Y2K9 1186 aa16.28■□□□□ 0.2
SS18-215ENST00000580642 PPP2R2CQ9Y2T4 447 aa16.28■□□□□ 0.2
SS18-215ENST00000580642 SCN5AQ14524 2016 aa16.28■□□□□ 0.2
SS18-215ENST00000580642 MICAL3Q7RTP6 2002 aa16.28■□□□□ 0.2
SS18-215ENST00000580642 A0A087X0T9 212 aa16.27■□□□□ 0.2
SS18-215ENST00000580642 ESPNB1AK53 854 aa16.27■□□□□ 0.2
SS18-215ENST00000580642 KIF4AO95239 1232 aa16.27■□□□□ 0.2
SS18-215ENST00000580642 FAM228BP0C875 321 aa16.27■□□□□ 0.2
SS18-215ENST00000580642 IBSPP21815 317 aaPredicted RBP16.27■□□□□ 0.2
SS18-215ENST00000580642 NDST1P52848 882 aa16.27■□□□□ 0.2
SS18-215ENST00000580642 CDH8P55286 799 aa16.27■□□□□ 0.2
SS18-215ENST00000580642 MTF1Q14872 753 aa16.27■□□□□ 0.2
SS18-215ENST00000580642 CNGA2Q16280 664 aa16.27■□□□□ 0.2
SS18-215ENST00000580642 TMEM240Q5SV17 173 aa16.27■□□□□ 0.2
SS18-215ENST00000580642 COL13A1Q5TAT6 717 aaPredicted RBP16.27■□□□□ 0.2
SS18-215ENST00000580642 ALKBH5Q6P6C2 394 aaKnown RBP16.27■□□□□ 0.2
SS18-215ENST00000580642 CD300LGQ6UXG3 332 aa16.27■□□□□ 0.2
SS18-215ENST00000580642 TOGARAM2Q6ZUX3 1019 aa16.27■□□□□ 0.2
SS18-215ENST00000580642 ZNF365Q70YC5 407 aa16.27■□□□□ 0.2
SS18-215ENST00000580642 CCAR2Q8N163 923 aaKnown RBP16.27■□□□□ 0.2
SS18-215ENST00000580642 SLC4A11Q8NBS3 891 aa16.27■□□□□ 0.2
SS18-215ENST00000580642 KBTBD7Q8WVZ9 684 aa16.27■□□□□ 0.2
SS18-215ENST00000580642 ZNF606Q8WXB4 792 aa16.27■□□□□ 0.2
SS18-215ENST00000580642 CALR3Q96L12 384 aaKnown RBP16.27■□□□□ 0.2
SS18-215ENST00000580642 TSGA10Q9BZW7 698 aa16.27■□□□□ 0.2
SS18-215ENST00000580642 LHX5Q9H2C1 402 aa16.27■□□□□ 0.2
SS18-215ENST00000580642 FAN1Q9Y2M0 1017 aa16.27■□□□□ 0.2
SS18-215ENST00000580642 CEP83Q9Y592 693 aa16.27■□□□□ 0.2
SS18-215ENST00000580642 TRIP11Q15643 1979 aa16.27■□□□□ 0.19
SS18-215ENST00000580642 A8MXQ7 604 aa16.26■□□□□ 0.19
SS18-215ENST00000580642 DDX3XO00571 662 aaKnown RBP eCLIP16.26■□□□□ 0.191e-15■■■□□ 17.7
SS18-215ENST00000580642 NRP1O14786 923 aa16.26■□□□□ 0.19
SS18-215ENST00000580642 ZNF500O60304 480 aaPredicted RBP16.26■□□□□ 0.19
SS18-215ENST00000580642 TADA2AO75478 443 aa16.26■□□□□ 0.19
SS18-215ENST00000580642 GALTP07902 379 aa16.26■□□□□ 0.19
SS18-215ENST00000580642 ACRP10323 421 aa16.26■□□□□ 0.19
SS18-215ENST00000580642 CHRNB2P17787 502 aa16.26■□□□□ 0.19
SS18-215ENST00000580642 PCSK1P29120 753 aa16.26■□□□□ 0.19
SS18-215ENST00000580642 MAGEA1P43355 309 aa16.26■□□□□ 0.19
SS18-215ENST00000580642 OR1G1P47890 313 aa16.26■□□□□ 0.19
SS18-215ENST00000580642 ALDH7A1P49419 539 aaKnown RBP16.26■□□□□ 0.19
SS18-215ENST00000580642 VAV2P52735 878 aa16.26■□□□□ 0.19
SS18-215ENST00000580642 HTRA4P83105 476 aaPredicted RBP16.26■□□□□ 0.19
SS18-215ENST00000580642 FMO1Q01740 532 aa16.26■□□□□ 0.19
SS18-215ENST00000580642 GFPT1Q06210 699 aaPredicted RBP16.26■□□□□ 0.19
SS18-215ENST00000580642 TIGD5Q53EQ6 642 aa16.26■□□□□ 0.19
SS18-215ENST00000580642 ARHGAP17Q68EM7 881 aa16.26■□□□□ 0.19
SS18-215ENST00000580642 GLYCTKQ8IVS8 523 aa16.26■□□□□ 0.19
SS18-215ENST00000580642 C3orf58Q8NDZ4 430 aa16.26■□□□□ 0.19
SS18-215ENST00000580642 OR6B3Q8NGW1 331 aa16.26■□□□□ 0.19
SS18-215ENST00000580642 DPF3Q92784 378 aa16.26■□□□□ 0.19
SS18-215ENST00000580642 ELMO3Q96BJ8 720 aa16.26■□□□□ 0.19
SS18-215ENST00000580642 VCPIP1Q96JH7 1222 aa16.26■□□□□ 0.19
SS18-215ENST00000580642 MRPL45Q9BRJ2 306 aaKnown RBP16.26■□□□□ 0.19
SS18-215ENST00000580642 PAAF1Q9BRP4 392 aa16.26■□□□□ 0.19
SS18-215ENST00000580642 ELOVL4Q9GZR5 314 aa16.26■□□□□ 0.19
SS18-215ENST00000580642 ISCUQ9H1K1 167 aa16.26■□□□□ 0.19
SS18-215ENST00000580642 ADAM28Q9UKQ2 775 aa16.26■□□□□ 0.19
SS18-215ENST00000580642 PCDHA13Q9Y5I0 950 aa16.26■□□□□ 0.19
SS18-215ENST00000580642 SF3B1O75533 1304 aaKnown RBP eCLIP16.25■□□□□ 0.195e-6■■■■■ 82.8
SS18-215ENST00000580642 BTNL10A8MVZ5 291 aa16.25■□□□□ 0.19
SS18-215ENST00000580642 PJA2O43164 708 aa16.25■□□□□ 0.19
SS18-215ENST00000580642 THAP12O43422 761 aa16.25■□□□□ 0.19
SS18-215ENST00000580642 RTN2O75298 545 aa16.25■□□□□ 0.19
SS18-215ENST00000580642 UPP2O95045 317 aa16.25■□□□□ 0.19
SS18-215ENST00000580642 GJB5O95377 273 aa16.25■□□□□ 0.19
SS18-215ENST00000580642 CYP1A1P04798 512 aaPredicted RBP16.25■□□□□ 0.19
SS18-215ENST00000580642 LAG3P18627 525 aa16.25■□□□□ 0.19
SS18-215ENST00000580642 CDH5P33151 784 aaPredicted RBP16.25■□□□□ 0.19
SS18-215ENST00000580642 RAP1GAPP47736 663 aa16.25■□□□□ 0.19
SS18-215ENST00000580642 SGO2Q562F6 1265 aa16.25■□□□□ 0.19
SS18-215ENST00000580642 CCDC122Q5T0U0 273 aa16.25■□□□□ 0.19
SS18-215ENST00000580642 OTOP2Q7RTS6 562 aa16.25■□□□□ 0.19
SS18-215ENST00000580642 GPR65Q8IYL9 337 aa16.25■□□□□ 0.19
SS18-215ENST00000580642 THEM5Q8N1Q8 247 aa16.25■□□□□ 0.19
SS18-215ENST00000580642 OLIG1Q8TAK6 271 aa16.25■□□□□ 0.19
SS18-215ENST00000580642 LNX1Q8TBB1 728 aaPredicted RBP16.25■□□□□ 0.19
SS18-215ENST00000580642 TRIM11Q96F44 468 aa16.25■□□□□ 0.19
SS18-215ENST00000580642 HEXIM2Q96MH2 286 aaKnown RBP16.25■□□□□ 0.19
SS18-215ENST00000580642 ACBD6Q9BR61 282 aa16.25■□□□□ 0.19
SS18-215ENST00000580642 PDCL3Q9H2J4 239 aa16.25■□□□□ 0.19
SS18-215ENST00000580642 AAASQ9NRG9 546 aa16.25■□□□□ 0.19
SS18-215ENST00000580642 SPTLC3Q9NUV7 552 aa16.25■□□□□ 0.19
SS18-215ENST00000580642 CDH9Q9ULB4 789 aa16.25■□□□□ 0.19
SS18-215ENST00000580642 INSL6Q9Y581 213 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms