RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 LRRN2O75325 713 aa10.95□□□□□ -0.66
SS18-210ENST00000578700 CCDC175P0C221 793 aa10.95□□□□□ -0.66
SS18-210ENST00000578700 ITGA4P13612 1032 aa10.95□□□□□ -0.66
SS18-210ENST00000578700 GLUD2P49448 558 aa10.95□□□□□ -0.66
SS18-210ENST00000578700 LIG4P49917 911 aa10.95□□□□□ -0.66
SS18-210ENST00000578700 RSPO4Q2I0M5 234 aaPredicted RBP10.95□□□□□ -0.66
SS18-210ENST00000578700 SLFN12LQ6IEE8 588 aa10.95□□□□□ -0.66
SS18-210ENST00000578700 DCLRE1AQ6PJP8 1040 aa10.95□□□□□ -0.66
SS18-210ENST00000578700 GBP6Q6ZN66 633 aa10.95□□□□□ -0.66
SS18-210ENST00000578700 MRPL10Q7Z7H8 261 aaKnown RBP10.95□□□□□ -0.66
SS18-210ENST00000578700 FMNL3Q8IVF7 1028 aa10.95□□□□□ -0.66
SS18-210ENST00000578700 ZBTB8OSQ8IWT0 167 aa10.95□□□□□ -0.66
SS18-210ENST00000578700 CCAR2Q8N163 923 aaKnown RBP10.95□□□□□ -0.66
SS18-210ENST00000578700 CMASQ8NFW8 434 aaPredicted RBP10.95□□□□□ -0.66
SS18-210ENST00000578700 PSPC1Q8WXF1 523 aaKnown RBP10.95□□□□□ -0.66
SS18-210ENST00000578700 RUBCNQ92622 972 aa10.95□□□□□ -0.66
SS18-210ENST00000578700 TMEM143Q96AN5 459 aa10.95□□□□□ -0.66
SS18-210ENST00000578700 B3GALT6Q96L58 329 aa10.95□□□□□ -0.66
SS18-210ENST00000578700 CEP89Q96ST8 783 aa10.95□□□□□ -0.66
SS18-210ENST00000578700 DNAJC7Q99615 494 aa10.95□□□□□ -0.66
SS18-210ENST00000578700 HERC2P3Q9BVR0 1158 aa10.95□□□□□ -0.66
SS18-210ENST00000578700 C2orf40Q9H1Z8 148 aa10.95□□□□□ -0.66
SS18-210ENST00000578700 KIAA1586Q9HCI6 787 aa10.95□□□□□ -0.66
SS18-210ENST00000578700 XPNPEP1Q9NQW7 623 aa10.95□□□□□ -0.66
SS18-210ENST00000578700 ARHGEF3Q9NR81 526 aa10.95□□□□□ -0.66
SS18-210ENST00000578700 FAM207AQ9NSI2 230 aaPredicted RBP10.95□□□□□ -0.66
SS18-210ENST00000578700 AGPAT5Q9NUQ2 364 aa10.95□□□□□ -0.66
SS18-210ENST00000578700 EPS15L1Q9UBC2 864 aa10.95□□□□□ -0.66
SS18-210ENST00000578700 DPP7Q9UHL4 492 aa10.95□□□□□ -0.66
SS18-210ENST00000578700 ACACBO00763 2458 aa10.94□□□□□ -0.66
SS18-210ENST00000578700 MIA3Q5JRA6 1907 aa10.94□□□□□ -0.66
SS18-210ENST00000578700 SPTBN2O15020 2390 aa10.94□□□□□ -0.66
SS18-210ENST00000578700 GTPBP10A4D1E9 387 aaKnown RBP10.94□□□□□ -0.66
SS18-210ENST00000578700 F8W810 466 aa10.94□□□□□ -0.66
SS18-210ENST00000578700 ASAP2O43150 1006 aa10.94□□□□□ -0.66
SS18-210ENST00000578700 CYLC1P35663 651 aaPredicted RBP10.94□□□□□ -0.66
SS18-210ENST00000578700 ARL2P36404 184 aa10.94□□□□□ -0.66
SS18-210ENST00000578700 MATR3P43243 847 aaKnown RBP eCLIP10.94□□□□□ -0.66
SS18-210ENST00000578700 GOLGA8FQ08AF8 430 aa10.94□□□□□ -0.66
SS18-210ENST00000578700 GOLGA8DPQ0D2H9 430 aa10.94□□□□□ -0.66
SS18-210ENST00000578700 EXOC3L4Q17RC7 722 aa10.94□□□□□ -0.66
SS18-210ENST00000578700 C17orf53Q8N3J3 647 aaPredicted RBP10.94□□□□□ -0.66
SS18-210ENST00000578700 TXLNBQ8N3L3 684 aa10.94□□□□□ -0.66
SS18-210ENST00000578700 POMGNT1Q8WZA1 660 aa10.94□□□□□ -0.66
SS18-210ENST00000578700 RABGGTAQ92696 567 aa10.94□□□□□ -0.66
SS18-210ENST00000578700 NXPE3Q969Y0 559 aa10.94□□□□□ -0.66
SS18-210ENST00000578700 GAD1Q99259 594 aa10.94□□□□□ -0.66
SS18-210ENST00000578700 RPP25Q9BUL9 199 aaKnown RBP10.94□□□□□ -0.66
SS18-210ENST00000578700 LSM14BQ9BX40 385 aaKnown RBP10.94□□□□□ -0.66
SS18-210ENST00000578700 MINDY3Q9H8M7 445 aa10.94□□□□□ -0.66
SS18-210ENST00000578700 IFT122Q9HBG6 1241 aa10.94□□□□□ -0.66
SS18-210ENST00000578700 DMAC2Q9NW81 257 aa10.94□□□□□ -0.66
SS18-210ENST00000578700 MARCH5Q9NX47 278 aa10.94□□□□□ -0.66
SS18-210ENST00000578700 MIOSQ9NXC5 875 aa10.94□□□□□ -0.66
SS18-210ENST00000578700 HSPBP1Q9NZL4 362 aa10.94□□□□□ -0.66
SS18-210ENST00000578700 CEP72Q9P209 647 aa10.94□□□□□ -0.66
SS18-210ENST00000578700 DAAM1Q9Y4D1 1078 aa10.94□□□□□ -0.66
SS18-210ENST00000578700 HES2Q9Y543 173 aa10.94□□□□□ -0.66
SS18-210ENST00000578700 NUMBLQ9Y6R0 609 aa10.94□□□□□ -0.66
SS18-210ENST00000578700 TDRD15B5MCY1 1934 aaKnown RBP10.94□□□□□ -0.66
SS18-210ENST00000578700 CNTNAP2Q9UHC6 1331 aa10.93□□□□□ -0.66
SS18-210ENST00000578700 TULP1O00294 542 aaPredicted RBP10.93□□□□□ -0.66
SS18-210ENST00000578700 TGM5O43548 720 aa10.93□□□□□ -0.66
SS18-210ENST00000578700 KRT37O76014 449 aa10.93□□□□□ -0.66
SS18-210ENST00000578700 ERLIN2O94905 339 aa10.93□□□□□ -0.66
SS18-210ENST00000578700 LDHAP00338 332 aaKnown RBP10.93□□□□□ -0.66
SS18-210ENST00000578700 LAMP2P13473 410 aa10.93□□□□□ -0.66
SS18-210ENST00000578700 GLULP15104 373 aa10.93□□□□□ -0.66
SS18-210ENST00000578700 RPL17P18621 184 aaKnown RBP10.93□□□□□ -0.66
SS18-210ENST00000578700 GARTP22102 1010 aa10.93□□□□□ -0.66
SS18-210ENST00000578700 GLRA2P23416 452 aa10.93□□□□□ -0.66
SS18-210ENST00000578700 MLH1P40692 756 aa10.93□□□□□ -0.66
SS18-210ENST00000578700 CASP4P49662 377 aa10.93□□□□□ -0.66
SS18-210ENST00000578700 SCNN1GP51170 649 aa10.93□□□□□ -0.66
SS18-210ENST00000578700 GPC5P78333 572 aa10.93□□□□□ -0.66
SS18-210ENST00000578700 KRT83P78385 493 aa10.93□□□□□ -0.66
SS18-210ENST00000578700 BFSP1Q12934 665 aa10.93□□□□□ -0.66
SS18-210ENST00000578700 UBXN11Q5T124 520 aa10.93□□□□□ -0.66
SS18-210ENST00000578700 KIAA0319Q5VV43 1072 aa10.93□□□□□ -0.66
SS18-210ENST00000578700 PHLDB3Q6NSJ2 640 aa10.93□□□□□ -0.66
SS18-210ENST00000578700 SRGAP1Q7Z6B7 1085 aa10.93□□□□□ -0.66
SS18-210ENST00000578700 COLGALT2Q8IYK4 626 aa10.93□□□□□ -0.66
SS18-210ENST00000578700 CCDC170Q8IYT3 715 aa10.93□□□□□ -0.66
SS18-210ENST00000578700 PRPF31Q8WWY3 499 aaKnown RBP10.93□□□□□ -0.66
SS18-210ENST00000578700 BSNDQ8WZ55 320 aa10.93□□□□□ -0.66
SS18-210ENST00000578700 SLC35C1Q96A29 364 aa10.93□□□□□ -0.66
SS18-210ENST00000578700 ZNF707Q96C28 371 aaPredicted RBP10.93□□□□□ -0.66
SS18-210ENST00000578700 CPB2Q96IY4 423 aa10.93□□□□□ -0.66
SS18-210ENST00000578700 CNTNAP3BQ96NU0 1288 aa10.93□□□□□ -0.66
SS18-210ENST00000578700 COLEC11Q9BWP8 271 aa10.93□□□□□ -0.66
SS18-210ENST00000578700 EIF2AQ9BY44 585 aaKnown RBP10.93□□□□□ -0.66
SS18-210ENST00000578700 CNTNAP3Q9BZ76 1288 aa10.93□□□□□ -0.66
SS18-210ENST00000578700 DEF6Q9H4E7 631 aa10.93□□□□□ -0.66
SS18-210ENST00000578700 PCIF1Q9H4Z3 704 aa10.93□□□□□ -0.66
SS18-210ENST00000578700 TMEM134Q9H6X4 195 aa10.93□□□□□ -0.66
SS18-210ENST00000578700 LUC7LQ9NQ29 371 aaKnown RBP10.93□□□□□ -0.66
SS18-210ENST00000578700 PLCB1Q9NQ66 1216 aa10.93□□□□□ -0.66
SS18-210ENST00000578700 SPATA6Q9NWH7 488 aaPredicted RBP10.93□□□□□ -0.66
SS18-210ENST00000578700 TRMT1Q9NXH9 659 aaKnown RBP10.93□□□□□ -0.66
SS18-210ENST00000578700 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms