RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 FAM186AA6NE01 2351 aa8.75□□□□□ -1.01
VPS53-214ENST00000572607 A0A1W2PQ27 194 aa8.75□□□□□ -1.01
VPS53-214ENST00000572607 A0A1W2PQ64 194 aa8.75□□□□□ -1.01
VPS53-214ENST00000572607 A0A1W2PQD8 194 aa8.75□□□□□ -1.01
VPS53-214ENST00000572607 GOLGA8IPA6NC78 632 aa8.75□□□□□ -1.01
VPS53-214ENST00000572607 ZNF233A6NK53 670 aa8.75□□□□□ -1.01
VPS53-214ENST00000572607 OR6C75A6NL08 312 aa8.75□□□□□ -1.01
VPS53-214ENST00000572607 GOLGA8JA6NMD2 632 aa8.75□□□□□ -1.01
VPS53-214ENST00000572607 M0QZQ0 153 aa8.75□□□□□ -1.01
VPS53-214ENST00000572607 CCL16O15467 120 aa8.75□□□□□ -1.01
VPS53-214ENST00000572607 ADAM12O43184 909 aa8.75□□□□□ -1.01
VPS53-214ENST00000572607 KIF20AO95235 890 aa8.75□□□□□ -1.01
VPS53-214ENST00000572607 POU2F2P09086 479 aa8.75□□□□□ -1.01
VPS53-214ENST00000572607 TMEM191BP0C7N4 346 aa8.75□□□□□ -1.01
VPS53-214ENST00000572607 TYMPP19971 482 aa8.75□□□□□ -1.01
VPS53-214ENST00000572607 FSHRP23945 695 aa8.75□□□□□ -1.01
VPS53-214ENST00000572607 IGFBP6P24592 240 aaPredicted RBP8.75□□□□□ -1.01
VPS53-214ENST00000572607 ADSSP30520 456 aa8.75□□□□□ -1.01
VPS53-214ENST00000572607 PNPLA4P41247 253 aa8.75□□□□□ -1.01
VPS53-214ENST00000572607 SNRPFP62306 86 aaKnown RBP8.75□□□□□ -1.01
VPS53-214ENST00000572607 ZXDAP98168 799 aa8.75□□□□□ -1.01
VPS53-214ENST00000572607 ROR1Q01973 937 aa8.75□□□□□ -1.01
VPS53-214ENST00000572607 CUL4BQ13620 913 aa8.75□□□□□ -1.01
VPS53-214ENST00000572607 SV2CQ496J9 727 aa8.75□□□□□ -1.01
VPS53-214ENST00000572607 TPGS2Q68CL5 300 aa8.75□□□□□ -1.01
VPS53-214ENST00000572607 OVOS1Q6IE37 1185 aa8.75□□□□□ -1.01
VPS53-214ENST00000572607 UBALD2Q8IYN6 164 aa8.75□□□□□ -1.01
VPS53-214ENST00000572607 THEM5Q8N1Q8 247 aa8.75□□□□□ -1.01
VPS53-214ENST00000572607 ELMOD1Q8N336 334 aa8.75□□□□□ -1.01
VPS53-214ENST00000572607 FSIP1Q8NA03 581 aa8.75□□□□□ -1.01
VPS53-214ENST00000572607 RDH13Q8NBN7 331 aa8.75□□□□□ -1.01
VPS53-214ENST00000572607 GOLGA5Q8TBA6 731 aa8.75□□□□□ -1.01
VPS53-214ENST00000572607 ZNF507Q8TCN5 953 aa8.75□□□□□ -1.01
VPS53-214ENST00000572607 ZNF707Q96C28 371 aaPredicted RBP8.75□□□□□ -1.01
VPS53-214ENST00000572607 CBWD1Q9BRT8 395 aa8.75□□□□□ -1.01
VPS53-214ENST00000572607 FGFBP2Q9BYJ0 223 aa8.75□□□□□ -1.01
VPS53-214ENST00000572607 IKZF4Q9H2S9 585 aa8.75□□□□□ -1.01
VPS53-214ENST00000572607 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP8.75□□□□□ -1.01
VPS53-214ENST00000572607 CGNQ9P2M7 1197 aaKnown RBP8.75□□□□□ -1.01
VPS53-214ENST00000572607 DSEQ9UL01 958 aa8.75□□□□□ -1.01
VPS53-214ENST00000572607 MAFFQ9ULX9 164 aa8.75□□□□□ -1.01
VPS53-214ENST00000572607 DNAH14Q0VDD8 3507 aa8.75□□□□□ -1.01
VPS53-214ENST00000572607 WDR87Q6ZQQ6 2873 aa8.75□□□□□ -1.01
VPS53-214ENST00000572607 MYH15Q9Y2K3 1946 aa8.74□□□□□ -1.01
VPS53-214ENST00000572607 RIF1Q5UIP0 2472 aaKnown RBP8.74□□□□□ -1.01
VPS53-214ENST00000572607 WDR27A2RRH5 827 aa8.74□□□□□ -1.01
VPS53-214ENST00000572607 PIRO00625 290 aa8.74□□□□□ -1.01
VPS53-214ENST00000572607 GPR37O15354 613 aa8.74□□□□□ -1.01
VPS53-214ENST00000572607 ABLIM3O94929 683 aa8.74□□□□□ -1.01
VPS53-214ENST00000572607 TNNC2P02585 160 aa8.74□□□□□ -1.01
VPS53-214ENST00000572607 KRT19P08727 400 aa8.74□□□□□ -1.01
VPS53-214ENST00000572607 ATF2P15336 505 aa8.74□□□□□ -1.01
VPS53-214ENST00000572607 CASP1P29466 404 aa8.74□□□□□ -1.01
VPS53-214ENST00000572607 AARSP49588 968 aaKnown RBP eCLIP8.74□□□□□ -1.01
VPS53-214ENST00000572607 LILRA4P59901 499 aa8.74□□□□□ -1.01
VPS53-214ENST00000572607 SIGLEC14Q08ET2 396 aa8.74□□□□□ -1.01
VPS53-214ENST00000572607 PSMD2Q13200 908 aa8.74□□□□□ -1.01
VPS53-214ENST00000572607 PLD1Q13393 1074 aa8.74□□□□□ -1.01
VPS53-214ENST00000572607 MRPL58Q14197 206 aaKnown RBP8.74□□□□□ -1.01
VPS53-214ENST00000572607 IQCEQ6IPM2 695 aa8.74□□□□□ -1.01
VPS53-214ENST00000572607 CRELD2Q6UXH1 353 aaPredicted RBP8.74□□□□□ -1.01
VPS53-214ENST00000572607 RSPO2Q6UXX9 243 aaPredicted RBP8.74□□□□□ -1.01
VPS53-214ENST00000572607 GRASPQ7Z6J2 395 aaPredicted RBP8.74□□□□□ -1.01
VPS53-214ENST00000572607 SUGP1Q8IWZ8 645 aaKnown RBP8.74□□□□□ -1.01
VPS53-214ENST00000572607 NELFCDQ8IXH7 590 aa8.74□□□□□ -1.01
VPS53-214ENST00000572607 EFCAB13Q8IY85 973 aa8.74□□□□□ -1.01
VPS53-214ENST00000572607 GRAMD1CQ8IYS0 662 aa8.74□□□□□ -1.01
VPS53-214ENST00000572607 GLIS3Q8NEA6 775 aa8.74□□□□□ -1.01
VPS53-214ENST00000572607 PAGE5Q96GU1 130 aa8.74□□□□□ -1.01
VPS53-214ENST00000572607 ANKRD36BP1Q96IX9 119 aa8.74□□□□□ -1.01
VPS53-214ENST00000572607 SENP8Q96LD8 212 aa8.74□□□□□ -1.01
VPS53-214ENST00000572607 SLC39A2Q9NP94 309 aa8.74□□□□□ -1.01
VPS53-214ENST00000572607 AGPAT3Q9NRZ7 376 aa8.74□□□□□ -1.01
VPS53-214ENST00000572607 HSPBP1Q9NZL4 362 aa8.74□□□□□ -1.01
VPS53-214ENST00000572607 IGSF9Q9P2J2 1179 aa8.74□□□□□ -1.01
VPS53-214ENST00000572607 LIMD1Q9UGP4 676 aa8.74□□□□□ -1.01
VPS53-214ENST00000572607 AFF4Q9UHB7 1163 aaKnown RBP8.74□□□□□ -1.01
VPS53-214ENST00000572607 ITGA11Q9UKX5 1188 aa8.74□□□□□ -1.01
VPS53-214ENST00000572607 HPSEQ9Y251 543 aa8.74□□□□□ -1.01
VPS53-214ENST00000572607 TIMM13Q9Y5L4 95 aaPredicted RBP8.74□□□□□ -1.01
VPS53-214ENST00000572607 ZFP37Q9Y6Q3 630 aaPredicted RBP8.74□□□□□ -1.01
VPS53-214ENST00000572607 PTPRZ1P23471 2315 aaPredicted RBP8.74□□□□□ -1.01
VPS53-214ENST00000572607 CACNA1AO00555 2505 aa8.74□□□□□ -1.01
VPS53-214ENST00000572607 DENND4AQ7Z401 1863 aa8.73□□□□□ -1.01
VPS53-214ENST00000572607 ANO9A1A5B4 782 aa8.73□□□□□ -1.01
VPS53-214ENST00000572607 CYB561D2O14569 222 aa8.73□□□□□ -1.01
VPS53-214ENST00000572607 PPEF2O14830 753 aa8.73□□□□□ -1.01
VPS53-214ENST00000572607 TBC1D4O60343 1298 aa8.73□□□□□ -1.01
VPS53-214ENST00000572607 PRPF40AO75400 957 aaKnown RBP8.73□□□□□ -1.01
VPS53-214ENST00000572607 OAZ2O95190 189 aa8.73□□□□□ -1.01
VPS53-214ENST00000572607 PAPLNO95428 1278 aa8.73□□□□□ -1.01
VPS53-214ENST00000572607 PDGFBP01127 241 aaPredicted RBP8.73□□□□□ -1.01
VPS53-214ENST00000572607 ITGB3P05106 788 aa8.73□□□□□ -1.01
VPS53-214ENST00000572607 POLR2BP30876 1174 aaKnown RBP8.73□□□□□ -1.01
VPS53-214ENST00000572607 GCGRP47871 477 aa8.73□□□□□ -1.01
VPS53-214ENST00000572607 CYP2J2P51589 502 aa8.73□□□□□ -1.01
VPS53-214ENST00000572607 NDUFA8P51970 172 aa8.73□□□□□ -1.01
VPS53-214ENST00000572607 RBP5P82980 135 aa8.73□□□□□ -1.01
VPS53-214ENST00000572607 ADCY1Q08828 1119 aa8.73□□□□□ -1.01
VPS53-214ENST00000572607 BFSP1Q12934 665 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms