RNA–Protein interactions for RNA: ENST00000571263.2

CDRT1-206, CMT1A duplicated region transcript 1, humanhuman

TSL 1 (best)

Gene CDRT1, Length 800 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDRT1-206ENST00000571263 A8MXQ7 604 aa12.71□□□□□ -0.37
CDRT1-206ENST00000571263 RBAK-RBAKDNI3L0D1 243 aa12.71□□□□□ -0.37
CDRT1-206ENST00000571263 GABRDO14764 452 aa12.71□□□□□ -0.37
CDRT1-206ENST00000571263 GJB5O95377 273 aa12.71□□□□□ -0.37
CDRT1-206ENST00000571263 GZMAP12544 262 aa12.71□□□□□ -0.37
CDRT1-206ENST00000571263 SYN1P17600 705 aa12.71□□□□□ -0.37
CDRT1-206ENST00000571263 MSNP26038 577 aaKnown RBP12.71□□□□□ -0.37
CDRT1-206ENST00000571263 PCSK1P29120 753 aa12.71□□□□□ -0.37
CDRT1-206ENST00000571263 KIF11P52732 1056 aa12.71□□□□□ -0.37
CDRT1-206ENST00000571263 NDST1P52848 882 aa12.71□□□□□ -0.37
CDRT1-206ENST00000571263 RAD23BP54727 409 aa12.71□□□□□ -0.37
CDRT1-206ENST00000571263 CDH8P55286 799 aa12.71□□□□□ -0.37
CDRT1-206ENST00000571263 HTRA4P83105 476 aaPredicted RBP12.71□□□□□ -0.37
CDRT1-206ENST00000571263 MAPRE1Q15691 268 aaKnown RBP12.71□□□□□ -0.37
CDRT1-206ENST00000571263 CNGA2Q16280 664 aa12.71□□□□□ -0.37
CDRT1-206ENST00000571263 ASTE1Q2TB18 679 aaPredicted RBP12.71□□□□□ -0.37
CDRT1-206ENST00000571263 TIGD5Q53EQ6 642 aa12.71□□□□□ -0.37
CDRT1-206ENST00000571263 SCARA5Q6ZMJ2 495 aa12.71□□□□□ -0.37
CDRT1-206ENST00000571263 SLC47A2Q86VL8 602 aa12.71□□□□□ -0.37
CDRT1-206ENST00000571263 ZSCAN30Q86W11 494 aa12.71□□□□□ -0.37
CDRT1-206ENST00000571263 ADGRF2Q8IZF7 708 aa12.71□□□□□ -0.37
CDRT1-206ENST00000571263 EPS8L1Q8TE68 723 aa12.71□□□□□ -0.37
CDRT1-206ENST00000571263 ZNF606Q8WXB4 792 aa12.71□□□□□ -0.37
CDRT1-206ENST00000571263 RAD9AQ99638 391 aa12.71□□□□□ -0.37
CDRT1-206ENST00000571263 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.71□□□□□ -0.37
CDRT1-206ENST00000571263 ZNF518BQ9C0D4 1074 aa12.71□□□□□ -0.37
CDRT1-206ENST00000571263 SMYD3Q9H7B4 428 aa12.71□□□□□ -0.37
CDRT1-206ENST00000571263 KCND1Q9NSA2 647 aa12.71□□□□□ -0.37
CDRT1-206ENST00000571263 ADAM28Q9UKQ2 775 aa12.71□□□□□ -0.37
CDRT1-206ENST00000571263 INTUQ9ULD6 942 aa12.71□□□□□ -0.37
CDRT1-206ENST00000571263 ZMYND8Q9ULU4 1186 aaPredicted RBP12.71□□□□□ -0.37
CDRT1-206ENST00000571263 PCDHGC3Q9UN70 934 aa12.71□□□□□ -0.37
CDRT1-206ENST00000571263 STXBP5LQ9Y2K9 1186 aa12.71□□□□□ -0.37
CDRT1-206ENST00000571263 RWDD3Q9Y3V2 267 aa12.71□□□□□ -0.37
CDRT1-206ENST00000571263 CEP83Q9Y592 693 aa12.71□□□□□ -0.37
CDRT1-206ENST00000571263 SF3B1O75533 1304 aaKnown RBP eCLIP12.7□□□□□ -0.38
CDRT1-206ENST00000571263 PPM1AP35813 382 aa12.7□□□□□ -0.38
CDRT1-206ENST00000571263 BCAR1P56945 870 aa12.7□□□□□ -0.38
CDRT1-206ENST00000571263 SNX16P57768 344 aa12.7□□□□□ -0.38
CDRT1-206ENST00000571263 DEFB103AP81534 67 aa12.7□□□□□ -0.38
CDRT1-206ENST00000571263 SGO2Q562F6 1265 aa12.7□□□□□ -0.38
CDRT1-206ENST00000571263 SPOUT1Q5T280 376 aaKnown RBP12.7□□□□□ -0.38
CDRT1-206ENST00000571263 E4F1Q66K89 784 aaPredicted RBP12.7□□□□□ -0.38
CDRT1-206ENST00000571263 SCARA3Q6AZY7 606 aa12.7□□□□□ -0.38
CDRT1-206ENST00000571263 RAD9BQ6WBX8 426 aa12.7□□□□□ -0.38
CDRT1-206ENST00000571263 ZNF571Q7Z3V5 609 aaPredicted RBP12.7□□□□□ -0.38
CDRT1-206ENST00000571263 PDCL2Q8N4E4 241 aa12.7□□□□□ -0.38
CDRT1-206ENST00000571263 FIBCD1Q8N539 461 aa12.7□□□□□ -0.38
CDRT1-206ENST00000571263 CALR3Q96L12 384 aaKnown RBP12.7□□□□□ -0.38
CDRT1-206ENST00000571263 HEXIM2Q96MH2 286 aaKnown RBP12.7□□□□□ -0.38
CDRT1-206ENST00000571263 ZNF558Q96NG5 402 aa12.7□□□□□ -0.38
CDRT1-206ENST00000571263 ACBD6Q9BR61 282 aa12.7□□□□□ -0.38
CDRT1-206ENST00000571263 PAAF1Q9BRP4 392 aa12.7□□□□□ -0.38
CDRT1-206ENST00000571263 SDCBP2Q9H190 292 aa12.7□□□□□ -0.38
CDRT1-206ENST00000571263 CWH43Q9H720 699 aa12.7□□□□□ -0.38
CDRT1-206ENST00000571263 RC3H2Q9HBD1 1191 aaKnown RBP12.7□□□□□ -0.38
CDRT1-206ENST00000571263 ADAMTS1Q9UHI8 967 aa12.7□□□□□ -0.38
CDRT1-206ENST00000571263 NOCTQ9UK39 431 aaKnown RBP12.7□□□□□ -0.38
CDRT1-206ENST00000571263 CDH9Q9ULB4 789 aa12.7□□□□□ -0.38
CDRT1-206ENST00000571263 L1RE1Q9UN81 338 aa12.7□□□□□ -0.38
CDRT1-206ENST00000571263 PCDHB12Q9Y5F1 795 aa12.7□□□□□ -0.38
CDRT1-206ENST00000571263 ALPK3Q96L96 1907 aa12.7□□□□□ -0.38
CDRT1-206ENST00000571263 H7C4K7 107 aa12.69□□□□□ -0.38
CDRT1-206ENST00000571263 THAP12O43422 761 aa12.69□□□□□ -0.38
CDRT1-206ENST00000571263 LSM8O95777 96 aaKnown RBP12.69□□□□□ -0.38
CDRT1-206ENST00000571263 CD19P15391 556 aa12.69□□□□□ -0.38
CDRT1-206ENST00000571263 ATP2A2P16615 1042 aaKnown RBP12.69□□□□□ -0.38
CDRT1-206ENST00000571263 MAGEA1P43355 309 aa12.69□□□□□ -0.38
CDRT1-206ENST00000571263 SLC11A1P49279 550 aa12.69□□□□□ -0.38
CDRT1-206ENST00000571263 YWHAHQ04917 246 aaPredicted RBP12.69□□□□□ -0.38
CDRT1-206ENST00000571263 RASIP1Q5U651 963 aa12.69□□□□□ -0.38
CDRT1-206ENST00000571263 ARHGAP17Q68EM7 881 aa12.69□□□□□ -0.38
CDRT1-206ENST00000571263 ALKBH5Q6P6C2 394 aaKnown RBP12.69□□□□□ -0.38
CDRT1-206ENST00000571263 KCNT2Q6UVM3 1135 aa12.69□□□□□ -0.38
CDRT1-206ENST00000571263 CD300LGQ6UXG3 332 aa12.69□□□□□ -0.38
CDRT1-206ENST00000571263 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.69□□□□□ -0.38
CDRT1-206ENST00000571263 ZNF662Q6ZS27 426 aa12.69□□□□□ -0.38
CDRT1-206ENST00000571263 NOP9Q86U38 636 aaKnown RBP12.69□□□□□ -0.38
CDRT1-206ENST00000571263 HERC6Q8IVU3 1022 aa12.69□□□□□ -0.38
CDRT1-206ENST00000571263 GPR65Q8IYL9 337 aa12.69□□□□□ -0.38
CDRT1-206ENST00000571263 SLC4A11Q8NBS3 891 aa12.69□□□□□ -0.38
CDRT1-206ENST00000571263 C3orf58Q8NDZ4 430 aa12.69□□□□□ -0.38
CDRT1-206ENST00000571263 TET1Q8NFU7 2136 aa12.69□□□□□ -0.38
CDRT1-206ENST00000571263 SLC30A5Q8TAD4 765 aa12.69□□□□□ -0.38
CDRT1-206ENST00000571263 KIAA1524Q8TCG1 905 aa12.69□□□□□ -0.38
CDRT1-206ENST00000571263 WHAMMQ8TF30 809 aa12.69□□□□□ -0.38
CDRT1-206ENST00000571263 KBTBD7Q8WVZ9 684 aa12.69□□□□□ -0.38
CDRT1-206ENST00000571263 DDX1Q92499 740 aaKnown RBP12.69□□□□□ -0.38
CDRT1-206ENST00000571263 ELMO3Q96BJ8 720 aa12.69□□□□□ -0.38
CDRT1-206ENST00000571263 MRPL45Q9BRJ2 306 aaKnown RBP12.69□□□□□ -0.38
CDRT1-206ENST00000571263 SYT11Q9BT88 431 aa12.69□□□□□ -0.38
CDRT1-206ENST00000571263 MIS12Q9H081 205 aa12.69□□□□□ -0.38
CDRT1-206ENST00000571263 LHX5Q9H2C1 402 aa12.69□□□□□ -0.38
CDRT1-206ENST00000571263 DDX43Q9NXZ2 648 aaKnown RBP12.69□□□□□ -0.38
CDRT1-206ENST00000571263 DNAJB4Q9UDY4 337 aa12.69□□□□□ -0.38
CDRT1-206ENST00000571263 PUF60Q9UHX1 559 aaKnown RBP12.69□□□□□ -0.38
CDRT1-206ENST00000571263 NAGPAQ9UK23 515 aa12.69□□□□□ -0.38
CDRT1-206ENST00000571263 SSX2IPQ9Y2D8 614 aa12.69□□□□□ -0.38
CDRT1-206ENST00000571263 ADGRG1Q9Y653 693 aa12.69□□□□□ -0.38
CDRT1-206ENST00000571263 A0A087X0T9 212 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms