RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 BOLA3Q53S33 107 aa11.4□□□□□ -0.58
CLK3-226ENST00000569406 APOBEC3HQ6NTF7 200 aaKnown RBP11.4□□□□□ -0.58
CLK3-226ENST00000569406 RASSF3Q86WH2 238 aa11.4□□□□□ -0.58
CLK3-226ENST00000569406 PIGSQ96S52 555 aa11.4□□□□□ -0.58
CLK3-226ENST00000569406 ADAM7Q9H2U9 754 aa11.4□□□□□ -0.58
CLK3-226ENST00000569406 VAT1LQ9HCJ6 419 aa11.4□□□□□ -0.58
CLK3-226ENST00000569406 DNAJC17Q9NVM6 304 aaKnown RBP11.4□□□□□ -0.58
CLK3-226ENST00000569406 SEPT10Q9P0V9 454 aa11.4□□□□□ -0.58
CLK3-226ENST00000569406 ARHGAP10A1A4S6 786 aa11.39□□□□□ -0.59
CLK3-226ENST00000569406 NDC80O14777 642 aa11.39□□□□□ -0.59
CLK3-226ENST00000569406 PFDN6O15212 129 aa11.39□□□□□ -0.59
CLK3-226ENST00000569406 CLK2P49760 499 aaKnown RBP11.39□□□□□ -0.59
CLK3-226ENST00000569406 IST1P53990 364 aa11.39□□□□□ -0.59
CLK3-226ENST00000569406 ADRM1Q16186 407 aa11.39□□□□□ -0.59
CLK3-226ENST00000569406 TCP11X2Q5H9J9 407 aa11.39□□□□□ -0.59
CLK3-226ENST00000569406 C4orf22Q6V702 233 aa11.39□□□□□ -0.59
CLK3-226ENST00000569406 SP8Q8IXZ3 490 aa11.39□□□□□ -0.59
CLK3-226ENST00000569406 GALNT4Q8N4A0 578 aa11.39□□□□□ -0.59
CLK3-226ENST00000569406 INPP4AQ96PE3 977 aaPredicted RBP11.39□□□□□ -0.59
CLK3-226ENST00000569406 NUF2Q9BZD4 464 aa11.39□□□□□ -0.59
CLK3-226ENST00000569406 ZFYVE28Q9HCC9 887 aa11.39□□□□□ -0.59
CLK3-226ENST00000569406 UMODL1Q5DID0 1318 aa11.39□□□□□ -0.59
CLK3-226ENST00000569406 K7EPI3 171 aa11.39□□□□□ -0.59
CLK3-226ENST00000569406 RHOBTB3O94955 611 aa11.39□□□□□ -0.59
CLK3-226ENST00000569406 PRLRP16471 622 aa11.39□□□□□ -0.59
CLK3-226ENST00000569406 THOC5Q13769 683 aaKnown RBP11.39□□□□□ -0.59
CLK3-226ENST00000569406 NADK2Q4G0N4 442 aa11.39□□□□□ -0.59
CLK3-226ENST00000569406 SPOPLQ6IQ16 392 aa11.39□□□□□ -0.59
CLK3-226ENST00000569406 TTI2Q6NXR4 508 aa11.39□□□□□ -0.59
CLK3-226ENST00000569406 WDR59Q6PJI9 974 aa11.39□□□□□ -0.59
CLK3-226ENST00000569406 PLPP6Q8IY26 295 aa11.39□□□□□ -0.59
CLK3-226ENST00000569406 ZNF444Q8N0Y2 327 aaPredicted RBP11.39□□□□□ -0.59
CLK3-226ENST00000569406 ZFP28Q8NHY6 868 aa11.39□□□□□ -0.59
CLK3-226ENST00000569406 PYROXD1Q8WU10 500 aa11.39□□□□□ -0.59
CLK3-226ENST00000569406 UQCC2Q9BRT2 126 aa11.39□□□□□ -0.59
CLK3-226ENST00000569406 PAIP1Q9H074 479 aaKnown RBP11.39□□□□□ -0.59
CLK3-226ENST00000569406 CUEDC2Q9H467 287 aa11.39□□□□□ -0.59
CLK3-226ENST00000569406 GIN1Q9NXP7 522 aa11.39□□□□□ -0.59
CLK3-226ENST00000569406 TMCC3Q9ULS5 477 aa11.39□□□□□ -0.59
CLK3-226ENST00000569406 KMOO15229 486 aa11.39□□□□□ -0.59
CLK3-226ENST00000569406 SGTAO43765 313 aa11.39□□□□□ -0.59
CLK3-226ENST00000569406 SLC37A4O43826 429 aa11.39□□□□□ -0.59
CLK3-226ENST00000569406 FARP2O94887 1054 aaPredicted RBP11.39□□□□□ -0.59
CLK3-226ENST00000569406 GTF2IP78347 998 aa11.39□□□□□ -0.59
CLK3-226ENST00000569406 PHKG1Q16816 387 aa11.39□□□□□ -0.59
CLK3-226ENST00000569406 DCAF6Q58WW2 860 aa11.39□□□□□ -0.59
CLK3-226ENST00000569406 TMEM63BQ5T3F8 832 aa11.39□□□□□ -0.59
CLK3-226ENST00000569406 SIAH1Q8IUQ4 282 aa11.39□□□□□ -0.59
CLK3-226ENST00000569406 SAMD14Q8IZD0 417 aaPredicted RBP11.39□□□□□ -0.59
CLK3-226ENST00000569406 GALNT6Q8NCL4 622 aa11.39□□□□□ -0.59
CLK3-226ENST00000569406 GIMAP8Q8ND71 665 aaPredicted RBP11.39□□□□□ -0.59
CLK3-226ENST00000569406 PPP1R14CQ8TAE6 165 aa11.39□□□□□ -0.59
CLK3-226ENST00000569406 GSDMBQ8TAX9 411 aa11.39□□□□□ -0.59
CLK3-226ENST00000569406 PMEPA1Q969W9 287 aa11.39□□□□□ -0.59
CLK3-226ENST00000569406 KLHL25Q9H0H3 589 aa11.39□□□□□ -0.59
CLK3-226ENST00000569406 MARCH7Q9H992 704 aa11.39□□□□□ -0.59
CLK3-226ENST00000569406 SACM1LQ9NTJ5 587 aa11.39□□□□□ -0.59
CLK3-226ENST00000569406 SPEF1Q9Y4P9 236 aa11.39□□□□□ -0.59
CLK3-226ENST00000569406 CCDC194A0A1B0GVG4 234 aa11.38□□□□□ -0.59
CLK3-226ENST00000569406 H3BUI4 141 aa11.38□□□□□ -0.59
CLK3-226ENST00000569406 SNX2O60749 519 aa11.38□□□□□ -0.59
CLK3-226ENST00000569406 CCDC159P0C7I6 412 aa11.38□□□□□ -0.59
CLK3-226ENST00000569406 NR4A1P22736 598 aa11.38□□□□□ -0.59
CLK3-226ENST00000569406 ADSLP30566 484 aaPredicted RBP11.38□□□□□ -0.59
CLK3-226ENST00000569406 NFIAQ12857 509 aa11.38□□□□□ -0.59
CLK3-226ENST00000569406 PAK1Q13153 545 aa11.38□□□□□ -0.59
CLK3-226ENST00000569406 CUL1Q13616 776 aa11.38□□□□□ -0.59
CLK3-226ENST00000569406 TUBA3CQ13748 450 aa11.38□□□□□ -0.59
CLK3-226ENST00000569406 FYB2Q5VWT5 728 aa11.38□□□□□ -0.59
CLK3-226ENST00000569406 SFR1Q86XK3 245 aa11.38□□□□□ -0.59
CLK3-226ENST00000569406 COL23A1Q86Y22 540 aaPredicted RBP11.38□□□□□ -0.59
CLK3-226ENST00000569406 ANKLE1Q8NAG6 615 aa11.38□□□□□ -0.59
CLK3-226ENST00000569406 TOR1AIP2Q8NFQ8 470 aa11.38□□□□□ -0.59
CLK3-226ENST00000569406 RAB3IL1Q8TBN0 382 aa11.38□□□□□ -0.59
CLK3-226ENST00000569406 INPP5DQ92835 1189 aa11.38□□□□□ -0.59
CLK3-226ENST00000569406 MTMR8Q96EF0 704 aa11.38□□□□□ -0.59
CLK3-226ENST00000569406 P2RX7Q99572 595 aaKnown RBP11.38□□□□□ -0.59
CLK3-226ENST00000569406 IER2Q9BTL4 223 aa11.38□□□□□ -0.59
CLK3-226ENST00000569406 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.38□□□□□ -0.59
CLK3-226ENST00000569406 BLOC1S4Q9NUP1 217 aa11.38□□□□□ -0.59
CLK3-226ENST00000569406 RRN3Q9NYV6 651 aa11.38□□□□□ -0.59
CLK3-226ENST00000569406 TRPC5Q9UL62 973 aaPredicted RBP11.38□□□□□ -0.59
CLK3-226ENST00000569406 PACSIN2Q9UNF0 486 aaPredicted RBP11.38□□□□□ -0.59
CLK3-226ENST00000569406 COL6A1P12109 1028 aa11.38□□□□□ -0.59
CLK3-226ENST00000569406 EPS15P42566 896 aa11.38□□□□□ -0.59
CLK3-226ENST00000569406 RPL5P46777 297 aaKnown RBP11.38□□□□□ -0.59
CLK3-226ENST00000569406 MAP3K10Q02779 954 aa11.38□□□□□ -0.59
CLK3-226ENST00000569406 CNGA2Q16280 664 aa11.38□□□□□ -0.59
CLK3-226ENST00000569406 ECM1Q16610 540 aa11.38□□□□□ -0.59
CLK3-226ENST00000569406 ZNF746Q6NUN9 644 aaPredicted RBP11.38□□□□□ -0.59
CLK3-226ENST00000569406 CAPSLQ8WWF8 208 aa11.38□□□□□ -0.59
CLK3-226ENST00000569406 CDK5RAP3Q96JB5 506 aa11.38□□□□□ -0.59
CLK3-226ENST00000569406 NUDT12Q9BQG2 462 aa11.38□□□□□ -0.59
CLK3-226ENST00000569406 TLR10Q9BXR5 811 aa11.38□□□□□ -0.59
CLK3-226ENST00000569406 TTYH3Q9C0H2 523 aa11.38□□□□□ -0.59
CLK3-226ENST00000569406 STX18Q9P2W9 335 aaKnown RBP11.38□□□□□ -0.59
CLK3-226ENST00000569406 ZNF212Q9UDV6 495 aa11.38□□□□□ -0.59
CLK3-226ENST00000569406 ANGPTL2Q9UKU9 493 aa11.38□□□□□ -0.59
CLK3-226ENST00000569406 TBC1D30Q9Y2I9 924 aa11.38□□□□□ -0.59
CLK3-226ENST00000569406 TNS1Q9HBL0 1735 aaKnown RBP11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms