RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 CCDC77Q9BR77 488 aa14.02□□□□□ -0.16
VPS4A-204ENST00000566354 DCLK3Q9C098 648 aa14.02□□□□□ -0.16
VPS4A-204ENST00000566354 RXFP1Q9HBX9 757 aa14.02□□□□□ -0.16
VPS4A-204ENST00000566354 AVENQ9NQS1 362 aaPredicted RBP14.02□□□□□ -0.16
VPS4A-204ENST00000566354 PDGFCQ9NRA1 345 aa14.02□□□□□ -0.16
VPS4A-204ENST00000566354 SLC9A2Q9UBY0 812 aa14.02□□□□□ -0.16
VPS4A-204ENST00000566354 PRKAG3Q9UGI9 489 aa14.02□□□□□ -0.16
VPS4A-204ENST00000566354 TCEAL9Q9UHQ7 104 aa14.02□□□□□ -0.16
VPS4A-204ENST00000566354 LGALS13Q9UHV8 139 aa14.02□□□□□ -0.16
VPS4A-204ENST00000566354 CDH16O75309 829 aa14.02□□□□□ -0.17
VPS4A-204ENST00000566354 MYBL1P10243 752 aa14.02□□□□□ -0.17
VPS4A-204ENST00000566354 IBSPP21815 317 aaPredicted RBP14.02□□□□□ -0.17
VPS4A-204ENST00000566354 JAK3P52333 1124 aa14.02□□□□□ -0.17
VPS4A-204ENST00000566354 HTRA3P83110 453 aa14.02□□□□□ -0.17
VPS4A-204ENST00000566354 NPLOC4Q8TAT6 608 aa14.02□□□□□ -0.17
VPS4A-204ENST00000566354 ATG4AQ8WYN0 398 aa14.02□□□□□ -0.17
VPS4A-204ENST00000566354 TRIM11Q96F44 468 aa14.02□□□□□ -0.17
VPS4A-204ENST00000566354 ETAA1Q9NY74 926 aa14.02□□□□□ -0.17
VPS4A-204ENST00000566354 TBX20Q9UMR3 447 aa14.02□□□□□ -0.17
VPS4A-204ENST00000566354 ACTL7BQ9Y614 415 aa14.02□□□□□ -0.17
VPS4A-204ENST00000566354 RPS6KL1Q9Y6S9 549 aa14.02□□□□□ -0.17
VPS4A-204ENST00000566354 ASB14A6NK59 587 aa14.01□□□□□ -0.17
VPS4A-204ENST00000566354 CA12O43570 354 aa14.01□□□□□ -0.17
VPS4A-204ENST00000566354 UNGP13051 313 aaPredicted RBP14.01□□□□□ -0.17
VPS4A-204ENST00000566354 CNGA1P29973 690 aa14.01□□□□□ -0.17
VPS4A-204ENST00000566354 STX2P32856 288 aa14.01□□□□□ -0.17
VPS4A-204ENST00000566354 ACTR2P61160 394 aa14.01□□□□□ -0.17
VPS4A-204ENST00000566354 KCNJ2P63252 427 aa14.01□□□□□ -0.17
VPS4A-204ENST00000566354 GCNT1Q02742 428 aa14.01□□□□□ -0.17
VPS4A-204ENST00000566354 PTP4A2Q12974 167 aa14.01□□□□□ -0.17
VPS4A-204ENST00000566354 MKRN4PQ13434 485 aaPredicted RBP14.01□□□□□ -0.17
VPS4A-204ENST00000566354 MPP2Q14168 576 aa14.01□□□□□ -0.17
VPS4A-204ENST00000566354 RELL1Q8IUW5 271 aa14.01□□□□□ -0.17
VPS4A-204ENST00000566354 C4orf19Q8IY42 314 aa14.01□□□□□ -0.17
VPS4A-204ENST00000566354 MCOLN2Q8IZK6 566 aa14.01□□□□□ -0.17
VPS4A-204ENST00000566354 PIAS4Q8N2W9 510 aaPredicted RBP14.01□□□□□ -0.17
VPS4A-204ENST00000566354 TAS1R2Q8TE23 839 aa14.01□□□□□ -0.17
VPS4A-204ENST00000566354 GRAMD1AQ96CP6 724 aa14.01□□□□□ -0.17
VPS4A-204ENST00000566354 KLHL29Q96CT2 875 aa14.01□□□□□ -0.17
VPS4A-204ENST00000566354 MAML3Q96JK9 1138 aa14.01□□□□□ -0.17
VPS4A-204ENST00000566354 MAGEB18Q96M61 343 aa14.01□□□□□ -0.17
VPS4A-204ENST00000566354 MFSD14AQ96MC6 490 aa14.01□□□□□ -0.17
VPS4A-204ENST00000566354 TGS1Q96RS0 853 aaKnown RBP14.01□□□□□ -0.17
VPS4A-204ENST00000566354 SENP7Q9BQF6 1050 aa14.01□□□□□ -0.17
VPS4A-204ENST00000566354 NKIRAS1Q9NYS0 192 aa14.01□□□□□ -0.17
VPS4A-204ENST00000566354 NINJ2Q9NZG7 142 aa14.01□□□□□ -0.17
VPS4A-204ENST00000566354 CTNNAL1Q9UBT7 734 aa14.01□□□□□ -0.17
VPS4A-204ENST00000566354 PCDHA10Q9Y5I2 948 aa14.01□□□□□ -0.17
VPS4A-204ENST00000566354 ADGRA3Q8IWK6 1321 aa14.01□□□□□ -0.17
VPS4A-204ENST00000566354 TMEM150BA6NC51 233 aa14.01□□□□□ -0.17
VPS4A-204ENST00000566354 SETSIPP0DME0 302 aa14.01□□□□□ -0.17
VPS4A-204ENST00000566354 CTGFP29279 349 aa14.01□□□□□ -0.17
VPS4A-204ENST00000566354 SFNP31947 248 aa14.01□□□□□ -0.17
VPS4A-204ENST00000566354 STAT4Q14765 748 aa14.01□□□□□ -0.17
VPS4A-204ENST00000566354 PPP1R21Q6ZMI0 780 aa14.01□□□□□ -0.17
VPS4A-204ENST00000566354 MAP4K3Q8IVH8 894 aa14.01□□□□□ -0.17
VPS4A-204ENST00000566354 CCDC89Q8N998 374 aa14.01□□□□□ -0.17
VPS4A-204ENST00000566354 SAAL1Q96ER3 474 aa14.01□□□□□ -0.17
VPS4A-204ENST00000566354 RSRC1Q96IZ7 334 aaKnown RBP14.01□□□□□ -0.17
VPS4A-204ENST00000566354 SH2D3AQ9BRG2 576 aa14.01□□□□□ -0.17
VPS4A-204ENST00000566354 ARHGEF3Q9NR81 526 aa14.01□□□□□ -0.17
VPS4A-204ENST00000566354 GGT7Q9UJ14 662 aa14.01□□□□□ -0.17
VPS4A-204ENST00000566354 NAALADL1Q9UQQ1 740 aa14.01□□□□□ -0.17
VPS4A-204ENST00000566354 MYH9P35579 1960 aaKnown RBP14□□□□□ -0.17
VPS4A-204ENST00000566354 SLC15A5A6NIM6 579 aa14□□□□□ -0.17
VPS4A-204ENST00000566354 FARP2O94887 1054 aaPredicted RBP14□□□□□ -0.17
VPS4A-204ENST00000566354 KRT5P13647 590 aa14□□□□□ -0.17
VPS4A-204ENST00000566354 GBP2P32456 591 aaPredicted RBP14□□□□□ -0.17
VPS4A-204ENST00000566354 STRN3Q13033 797 aa14□□□□□ -0.17
VPS4A-204ENST00000566354 TRIP13Q15645 432 aaPredicted RBP14□□□□□ -0.17
VPS4A-204ENST00000566354 CCNG2Q16589 344 aa14□□□□□ -0.17
VPS4A-204ENST00000566354 MORN1Q5T089 497 aa14□□□□□ -0.17
VPS4A-204ENST00000566354 FAM102BQ5T8I3 360 aa14□□□□□ -0.17
VPS4A-204ENST00000566354 ZNF677Q86XU0 584 aa14□□□□□ -0.17
VPS4A-204ENST00000566354 CCDC60Q8IWA6 550 aaPredicted RBP14□□□□□ -0.17
VPS4A-204ENST00000566354 FITM2Q8N6M3 262 aa14□□□□□ -0.17
VPS4A-204ENST00000566354 TMEM161BQ8NDZ6 487 aa14□□□□□ -0.17
VPS4A-204ENST00000566354 GDAP1Q8TB36 358 aa14□□□□□ -0.17
VPS4A-204ENST00000566354 DHX38Q92620 1227 aaKnown RBP14□□□□□ -0.17
VPS4A-204ENST00000566354 DDX27Q96GQ7 796 aaKnown RBP14□□□□□ -0.17
VPS4A-204ENST00000566354 FBXL18Q96ME1 805 aa14□□□□□ -0.17
VPS4A-204ENST00000566354 GPRC5CQ9NQ84 441 aa14□□□□□ -0.17
VPS4A-204ENST00000566354 KLHL14Q9P2G3 628 aa14□□□□□ -0.17
VPS4A-204ENST00000566354 NEU2Q9Y3R4 380 aa14□□□□□ -0.17
VPS4A-204ENST00000566354 ZSWIM8A7E2V4 1837 aa14□□□□□ -0.17
VPS4A-204ENST00000566354 ZC3H11AO75152 810 aaKnown RBP eCLIP13.99□□□□□ -0.17
VPS4A-204ENST00000566354 GH1P01241 217 aa13.99□□□□□ -0.17
VPS4A-204ENST00000566354 TGFB3P10600 412 aa13.99□□□□□ -0.17
VPS4A-204ENST00000566354 ENPEPQ07075 957 aa13.99□□□□□ -0.17
VPS4A-204ENST00000566354 CRYMQ14894 314 aa13.99□□□□□ -0.17
VPS4A-204ENST00000566354 RNF43Q68DV7 783 aa13.99□□□□□ -0.17
VPS4A-204ENST00000566354 SWSAP1Q6NVH7 229 aa13.99□□□□□ -0.17
VPS4A-204ENST00000566354 ABHD15Q6UXT9 468 aa13.99□□□□□ -0.17
VPS4A-204ENST00000566354 CEP128Q6ZU80 1094 aa13.99□□□□□ -0.17
VPS4A-204ENST00000566354 ZNF365Q70YC5 407 aa13.99□□□□□ -0.17
VPS4A-204ENST00000566354 SV2AQ7L0J3 742 aa13.99□□□□□ -0.17
VPS4A-204ENST00000566354 CYP4X1Q8N118 509 aa13.99□□□□□ -0.17
VPS4A-204ENST00000566354 KLHL23Q8NBE8 558 aa13.99□□□□□ -0.17
VPS4A-204ENST00000566354 COPS5Q92905 334 aa13.99□□□□□ -0.17
VPS4A-204ENST00000566354 MLXIPLQ9NP71 852 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms