RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 CNNM4Q6P4Q7 775 aa11.69□□□□□ -0.54
VPS39-208ENST00000564994 LRRTM3Q86VH5 581 aa11.69□□□□□ -0.54
VPS39-208ENST00000564994 NT5DC4Q86YG4 428 aa11.69□□□□□ -0.54
VPS39-208ENST00000564994 PJA1Q8NG27 643 aa11.69□□□□□ -0.54
VPS39-208ENST00000564994 ASB16Q96NS5 453 aa11.69□□□□□ -0.54
VPS39-208ENST00000564994 DDX23Q9BUQ8 820 aaKnown RBP11.69□□□□□ -0.54
VPS39-208ENST00000564994 CUEDC2Q9H467 287 aa11.69□□□□□ -0.54
VPS39-208ENST00000564994 TMEM206Q9H813 350 aa11.69□□□□□ -0.54
VPS39-208ENST00000564994 PDE11AQ9HCR9 933 aa11.69□□□□□ -0.54
VPS39-208ENST00000564994 ZNF334Q9HCZ1 680 aaPredicted RBP11.69□□□□□ -0.54
VPS39-208ENST00000564994 ASAH2Q9NR71 780 aa11.69□□□□□ -0.54
VPS39-208ENST00000564994 PCDHA7Q9UN72 937 aa11.69□□□□□ -0.54
VPS39-208ENST00000564994 SIT1Q9Y3P8 196 aa11.69□□□□□ -0.54
VPS39-208ENST00000564994 GVINP1Q7Z2Y8 2422 aa11.68□□□□□ -0.54
VPS39-208ENST00000564994 PTPRJQ12913 1337 aa11.68□□□□□ -0.54
VPS39-208ENST00000564994 SPTBN4Q9H254 2564 aa11.68□□□□□ -0.54
VPS39-208ENST00000564994 SHISA7A6NL88 538 aa11.68□□□□□ -0.54
VPS39-208ENST00000564994 KPNA7A9QM74 516 aa11.68□□□□□ -0.54
VPS39-208ENST00000564994 TULP1O00294 542 aaPredicted RBP11.68□□□□□ -0.54
VPS39-208ENST00000564994 POLR2DO15514 142 aaKnown RBP11.68□□□□□ -0.54
VPS39-208ENST00000564994 LDHAP00338 332 aaKnown RBP11.68□□□□□ -0.54
VPS39-208ENST00000564994 ITGB3P05106 788 aa11.68□□□□□ -0.54
VPS39-208ENST00000564994 HSP90AA1P07900 732 aaKnown RBP11.68□□□□□ -0.54
VPS39-208ENST00000564994 CD72P21854 359 aa11.68□□□□□ -0.54
VPS39-208ENST00000564994 NBL1P41271 181 aa11.68□□□□□ -0.54
VPS39-208ENST00000564994 EPHB3P54753 998 aa11.68□□□□□ -0.54
VPS39-208ENST00000564994 DNM1Q05193 864 aaKnown RBP11.68□□□□□ -0.54
VPS39-208ENST00000564994 EHHADHQ08426 723 aa11.68□□□□□ -0.54
VPS39-208ENST00000564994 GRM2Q14416 872 aa11.68□□□□□ -0.54
VPS39-208ENST00000564994 SV2CQ496J9 727 aa11.68□□□□□ -0.54
VPS39-208ENST00000564994 SLC39A12Q504Y0 691 aa11.68□□□□□ -0.54
VPS39-208ENST00000564994 STXBP5Q5T5C0 1151 aa11.68□□□□□ -0.54
VPS39-208ENST00000564994 VITQ6UXI7 678 aa11.68□□□□□ -0.54
VPS39-208ENST00000564994 EPM2AIP1Q7L775 607 aaPredicted RBP11.68□□□□□ -0.54
VPS39-208ENST00000564994 GPD1LQ8N335 351 aa11.68□□□□□ -0.54
VPS39-208ENST00000564994 IQUBQ8NA54 791 aa11.68□□□□□ -0.54
VPS39-208ENST00000564994 LEMD2Q8NC56 503 aa11.68□□□□□ -0.54
VPS39-208ENST00000564994 ZNF507Q8TCN5 953 aa11.68□□□□□ -0.54
VPS39-208ENST00000564994 KCNG4Q8TDN1 519 aa11.68□□□□□ -0.54
VPS39-208ENST00000564994 SMARCD2Q92925 531 aa11.68□□□□□ -0.54
VPS39-208ENST00000564994 C7orf25Q9BPX7 421 aa11.68□□□□□ -0.54
VPS39-208ENST00000564994 LRRC27Q9C0I9 530 aa11.68□□□□□ -0.54
VPS39-208ENST00000564994 ZFP14Q9HCL3 533 aa11.68□□□□□ -0.54
VPS39-208ENST00000564994 SIX4Q9UIU6 781 aa11.68□□□□□ -0.54
VPS39-208ENST00000564994 DSEQ9UL01 958 aa11.68□□□□□ -0.54
VPS39-208ENST00000564994 AGAP1Q9UPQ3 857 aa11.68□□□□□ -0.54
VPS39-208ENST00000564994 MTF2Q9Y483 593 aaPredicted RBP11.68□□□□□ -0.54
VPS39-208ENST00000564994 ZNF292O60281 2723 aa11.68□□□□□ -0.54
VPS39-208ENST00000564994 ZNF638Q14966 1978 aaKnown RBP11.68□□□□□ -0.54
VPS39-208ENST00000564994 A0A1W2PRU2 124 aa11.67□□□□□ -0.54
VPS39-208ENST00000564994 KANSL1LA0AUZ9 987 aa11.67□□□□□ -0.54
VPS39-208ENST00000564994 TGFB1I1O43294 461 aa11.67□□□□□ -0.54
VPS39-208ENST00000564994 GFRA3O60609 400 aa11.67□□□□□ -0.54
VPS39-208ENST00000564994 PDIA4P13667 645 aaKnown RBP11.67□□□□□ -0.54
VPS39-208ENST00000564994 ATF6P18850 670 aa11.67□□□□□ -0.54
VPS39-208ENST00000564994 VIPR2P41587 438 aa11.67□□□□□ -0.54
VPS39-208ENST00000564994 ALDH1A3P47895 512 aa11.67□□□□□ -0.54
VPS39-208ENST00000564994 ASIC1P78348 528 aa11.67□□□□□ -0.54
VPS39-208ENST00000564994 AMPD3Q01432 767 aa11.67□□□□□ -0.54
VPS39-208ENST00000564994 PFKPQ01813 784 aa11.67□□□□□ -0.54
VPS39-208ENST00000564994 PRKCQQ04759 706 aa11.67□□□□□ -0.54
VPS39-208ENST00000564994 PLD1Q13393 1074 aa11.67□□□□□ -0.54
VPS39-208ENST00000564994 FAM26FQ5R3K3 315 aa11.67□□□□□ -0.54
VPS39-208ENST00000564994 RESP18Q5W5W9 173 aa11.67□□□□□ -0.54
VPS39-208ENST00000564994 LMBRD2Q68DH5 695 aaPredicted RBP11.67□□□□□ -0.54
VPS39-208ENST00000564994 GAREM2Q75VX8 874 aa11.67□□□□□ -0.54
VPS39-208ENST00000564994 ASCL5Q7RTU5 278 aa11.67□□□□□ -0.54
VPS39-208ENST00000564994 FRMD5Q7Z6J6 570 aa11.67□□□□□ -0.54
VPS39-208ENST00000564994 DNAJB7Q7Z6W7 309 aaPredicted RBP11.67□□□□□ -0.54
VPS39-208ENST00000564994 METTL23Q86XA0 190 aa11.67□□□□□ -0.54
VPS39-208ENST00000564994 CBWD2Q8IUF1 395 aa11.67□□□□□ -0.54
VPS39-208ENST00000564994 THEM5Q8N1Q8 247 aa11.67□□□□□ -0.54
VPS39-208ENST00000564994 ZSCAN18Q8TBC5 510 aaPredicted RBP11.67□□□□□ -0.54
VPS39-208ENST00000564994 NOC3LQ8WTT2 800 aaKnown RBP11.67□□□□□ -0.54
VPS39-208ENST00000564994 PSMG2Q969U7 264 aa11.67□□□□□ -0.54
VPS39-208ENST00000564994 RSPRY1Q96DX4 576 aa11.67□□□□□ -0.54
VPS39-208ENST00000564994 SHDQ96IW2 340 aa11.67□□□□□ -0.54
VPS39-208ENST00000564994 CHAMP1Q96JM3 812 aa11.67□□□□□ -0.54
VPS39-208ENST00000564994 ZNF560Q96MR9 790 aa11.67□□□□□ -0.54
VPS39-208ENST00000564994 LPIN3Q9BQK8 851 aa11.67□□□□□ -0.54
VPS39-208ENST00000564994 MKNK1Q9BUB5 465 aa11.67□□□□□ -0.54
VPS39-208ENST00000564994 MTMR12Q9C0I1 747 aa11.67□□□□□ -0.54
VPS39-208ENST00000564994 BLZF1Q9H2G9 400 aa11.67□□□□□ -0.54
VPS39-208ENST00000564994 TRPV4Q9HBA0 871 aa11.67□□□□□ -0.54
VPS39-208ENST00000564994 HEBP1Q9NRV9 189 aa11.67□□□□□ -0.54
VPS39-208ENST00000564994 TMLHEQ9NVH6 421 aa11.67□□□□□ -0.54
VPS39-208ENST00000564994 HSFX1Q9UBD0 423 aa11.67□□□□□ -0.54
VPS39-208ENST00000564994 RCOR1Q9UKL0 485 aa11.67□□□□□ -0.54
VPS39-208ENST00000564994 L1RE1Q9UN81 338 aa11.67□□□□□ -0.54
VPS39-208ENST00000564994 GTF3C3Q9Y5Q9 886 aa11.67□□□□□ -0.54
VPS39-208ENST00000564994 KIF26AQ9ULI4 1882 aaPredicted RBP11.67□□□□□ -0.54
VPS39-208ENST00000564994 EP300Q09472 2414 aaPredicted RBP11.67□□□□□ -0.54
VPS39-208ENST00000564994 FRYLO94915 3013 aa11.67□□□□□ -0.54
VPS39-208ENST00000564994 GREB1Q4ZG55 1949 aa11.66□□□□□ -0.54
VPS39-208ENST00000564994 EIF3DO15371 548 aaKnown RBP eCLIP11.66□□□□□ -0.54
VPS39-208ENST00000564994 PNPLA4P41247 253 aa11.66□□□□□ -0.54
VPS39-208ENST00000564994 ME1P48163 572 aa11.66□□□□□ -0.54
VPS39-208ENST00000564994 CUL4BQ13620 913 aa11.66□□□□□ -0.54
VPS39-208ENST00000564994 MGAT5BQ3V5L5 792 aa11.66□□□□□ -0.54
VPS39-208ENST00000564994 ATL3Q6DD88 541 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms