RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 ERMNQ8TAM6 284 aa7.99□□□□□ -1.13
VPS4A-203ENST00000564399 GCNAQ96QF7 691 aa7.99□□□□□ -1.13
VPS4A-203ENST00000564399 ACO2Q99798 780 aaKnown RBP7.99□□□□□ -1.13
VPS4A-203ENST00000564399 MKNK1Q9BUB5 465 aa7.99□□□□□ -1.13
VPS4A-203ENST00000564399 SMG9Q9H0W8 520 aaKnown RBP7.99□□□□□ -1.13
VPS4A-203ENST00000564399 CRISPLD1Q9H336 500 aa7.99□□□□□ -1.13
VPS4A-203ENST00000564399 EBF3Q9H4W6 596 aa7.99□□□□□ -1.13
VPS4A-203ENST00000564399 TASP1Q9H6P5 420 aa7.99□□□□□ -1.13
VPS4A-203ENST00000564399 GCN1Q92616 2671 aaKnown RBP7.98□□□□□ -1.13
VPS4A-203ENST00000564399 MYO16Q9Y6X6 1858 aa7.98□□□□□ -1.13
VPS4A-203ENST00000564399 ADAMTS9Q9P2N4 1935 aa7.98□□□□□ -1.13
VPS4A-203ENST00000564399 OR6C75A6NL08 312 aa7.98□□□□□ -1.13
VPS4A-203ENST00000564399 PATE3B3GLJ2 98 aa7.98□□□□□ -1.13
VPS4A-203ENST00000564399 SOAT2O75908 522 aa7.98□□□□□ -1.13
VPS4A-203ENST00000564399 OAZ2O95190 189 aa7.98□□□□□ -1.13
VPS4A-203ENST00000564399 VNN2O95498 520 aa7.98□□□□□ -1.13
VPS4A-203ENST00000564399 APBB3O95704 486 aa7.98□□□□□ -1.13
VPS4A-203ENST00000564399 MCF2P10911 925 aa7.98□□□□□ -1.13
VPS4A-203ENST00000564399 DRD1P21728 446 aa7.98□□□□□ -1.13
VPS4A-203ENST00000564399 CDC25CP30307 473 aa7.98□□□□□ -1.13
VPS4A-203ENST00000564399 DHPSP49366 369 aaPredicted RBP7.98□□□□□ -1.13
VPS4A-203ENST00000564399 GALK1P51570 392 aa7.98□□□□□ -1.13
VPS4A-203ENST00000564399 IRX4P78413 519 aa7.98□□□□□ -1.13
VPS4A-203ENST00000564399 DMC1Q14565 340 aa7.98□□□□□ -1.13
VPS4A-203ENST00000564399 VEPH1Q14D04 833 aa7.98□□□□□ -1.13
VPS4A-203ENST00000564399 USP39Q53GS9 565 aaKnown RBP7.98□□□□□ -1.13
VPS4A-203ENST00000564399 TRIM68Q6AZZ1 485 aa7.98□□□□□ -1.13
VPS4A-203ENST00000564399 CENPPQ6IPU0 288 aa7.98□□□□□ -1.13
VPS4A-203ENST00000564399 ARMCX5Q6P1M9 558 aa7.98□□□□□ -1.13
VPS4A-203ENST00000564399 CC2D1AQ6P1N0 951 aaPredicted RBP7.98□□□□□ -1.13
VPS4A-203ENST00000564399 DSTYKQ6XUX3 929 aa7.98□□□□□ -1.13
VPS4A-203ENST00000564399 RPLP0P6Q8NHW5 317 aa7.98□□□□□ -1.13
VPS4A-203ENST00000564399 WASF1Q92558 559 aa7.98□□□□□ -1.13
VPS4A-203ENST00000564399 PIGKQ92643 395 aa7.98□□□□□ -1.13
VPS4A-203ENST00000564399 KIFAP3Q92845 792 aa7.98□□□□□ -1.13
VPS4A-203ENST00000564399 PSMG2Q969U7 264 aa7.98□□□□□ -1.13
VPS4A-203ENST00000564399 EXOC4Q96A65 974 aa7.98□□□□□ -1.13
VPS4A-203ENST00000564399 ACDQ96AP0 544 aa7.98□□□□□ -1.13
VPS4A-203ENST00000564399 MTMR9Q96QG7 549 aa7.98□□□□□ -1.13
VPS4A-203ENST00000564399 P2RY13Q9BPV8 354 aa7.98□□□□□ -1.13
VPS4A-203ENST00000564399 POLR3CQ9BUI4 534 aaPredicted RBP7.98□□□□□ -1.13
VPS4A-203ENST00000564399 TARS2Q9BW92 718 aaKnown RBP7.98□□□□□ -1.13
VPS4A-203ENST00000564399 OXCT2Q9BYC2 517 aaPredicted RBP7.98□□□□□ -1.13
VPS4A-203ENST00000564399 MRPL4Q9BYD3 311 aaKnown RBP7.98□□□□□ -1.13
VPS4A-203ENST00000564399 SLC32A1Q9H598 525 aa7.98□□□□□ -1.13
VPS4A-203ENST00000564399 ZSWIM6Q9HCJ5 1215 aa7.98□□□□□ -1.13
VPS4A-203ENST00000564399 CNTN3Q9P232 1028 aa7.98□□□□□ -1.13
VPS4A-203ENST00000564399 ORC3Q9UBD5 711 aaPredicted RBP7.98□□□□□ -1.13
VPS4A-203ENST00000564399 MSRB2Q9Y3D2 182 aa7.98□□□□□ -1.13
VPS4A-203ENST00000564399 NEUROG3Q9Y4Z2 214 aa7.98□□□□□ -1.13
VPS4A-203ENST00000564399 DMXL2Q8TDJ6 3036 aa7.97□□□□□ -1.13
VPS4A-203ENST00000564399 MTMR11A4FU01 709 aa7.97□□□□□ -1.13
VPS4A-203ENST00000564399 M0QZQ0 153 aa7.97□□□□□ -1.13
VPS4A-203ENST00000564399 TAF4O00268 1085 aa7.97□□□□□ -1.13
VPS4A-203ENST00000564399 CDX4O14627 284 aaPredicted RBP7.97□□□□□ -1.13
VPS4A-203ENST00000564399 REC8O95072 547 aa7.97□□□□□ -1.13
VPS4A-203ENST00000564399 SEC24BO95487 1268 aa7.97□□□□□ -1.13
VPS4A-203ENST00000564399 U2AF2P26368 475 aaKnown RBP eCLIP7.97□□□□□ -1.13
VPS4A-203ENST00000564399 RPA1P27694 616 aa7.97□□□□□ -1.13
VPS4A-203ENST00000564399 WEE1P30291 646 aa7.97□□□□□ -1.13
VPS4A-203ENST00000564399 MCM7P33993 719 aa7.97□□□□□ -1.13
VPS4A-203ENST00000564399 RDXP35241 583 aaKnown RBP7.97□□□□□ -1.13
VPS4A-203ENST00000564399 AVPR1AP37288 418 aa7.97□□□□□ -1.13
VPS4A-203ENST00000564399 CDR1P51861 262 aa7.97□□□□□ -1.13
VPS4A-203ENST00000564399 PEX3P56589 373 aa7.97□□□□□ -1.13
VPS4A-203ENST00000564399 SCRN1Q12765 414 aa7.97□□□□□ -1.13
VPS4A-203ENST00000564399 BFSP1Q12934 665 aa7.97□□□□□ -1.13
VPS4A-203ENST00000564399 FBXO43Q4G163 708 aa7.97□□□□□ -1.13
VPS4A-203ENST00000564399 SEZ6Q53EL9 994 aa7.97□□□□□ -1.13
VPS4A-203ENST00000564399 PMS2CLQ68D20 193 aa7.97□□□□□ -1.13
VPS4A-203ENST00000564399 OVOS1Q6IE37 1185 aa7.97□□□□□ -1.13
VPS4A-203ENST00000564399 MPZL3Q6UWV2 235 aa7.97□□□□□ -1.13
VPS4A-203ENST00000564399 SYT13Q7L8C5 426 aa7.97□□□□□ -1.13
VPS4A-203ENST00000564399 C11orf74Q86VG3 221 aa7.97□□□□□ -1.13
VPS4A-203ENST00000564399 CMTM8Q8IZV2 173 aa7.97□□□□□ -1.13
VPS4A-203ENST00000564399 TTC9BQ8N6N2 239 aa7.97□□□□□ -1.13
VPS4A-203ENST00000564399 TTC16Q8NEE8 873 aa7.97□□□□□ -1.13
VPS4A-203ENST00000564399 TSTD1Q8NFU3 115 aa7.97□□□□□ -1.13
VPS4A-203ENST00000564399 TNFRSF25Q93038 417 aa7.97□□□□□ -1.13
VPS4A-203ENST00000564399 CHFRQ96EP1 664 aa7.97□□□□□ -1.13
VPS4A-203ENST00000564399 SEPT5Q99719 369 aaPredicted RBP7.97□□□□□ -1.13
VPS4A-203ENST00000564399 LPIN3Q9BQK8 851 aa7.97□□□□□ -1.13
VPS4A-203ENST00000564399 FAM83CQ9BQN1 747 aa7.97□□□□□ -1.13
VPS4A-203ENST00000564399 SLC46A2Q9BY10 475 aa7.97□□□□□ -1.13
VPS4A-203ENST00000564399 TPSD1Q9BZJ3 242 aa7.97□□□□□ -1.13
VPS4A-203ENST00000564399 TMEM60Q9H2L4 133 aa7.97□□□□□ -1.13
VPS4A-203ENST00000564399 BHMT2Q9H2M3 363 aa7.97□□□□□ -1.13
VPS4A-203ENST00000564399 FBRSL1Q9HCM7 1045 aaKnown RBP7.97□□□□□ -1.13
VPS4A-203ENST00000564399 PTPRHQ9HD43 1115 aa7.97□□□□□ -1.13
VPS4A-203ENST00000564399 HPS4Q9NQG7 708 aa7.97□□□□□ -1.13
VPS4A-203ENST00000564399 PDRG1Q9NUG6 133 aa7.97□□□□□ -1.13
VPS4A-203ENST00000564399 TUBGCP4Q9UGJ1 667 aa7.97□□□□□ -1.13
VPS4A-203ENST00000564399 EBF1Q9UH73 591 aa7.97□□□□□ -1.13
VPS4A-203ENST00000564399 KLK13Q9UKR3 277 aa7.97□□□□□ -1.13
VPS4A-203ENST00000564399 TCHHQ07283 1943 aa7.97□□□□□ -1.13
VPS4A-203ENST00000564399 CEP192Q8TEP8 1941 aa7.97□□□□□ -1.13
VPS4A-203ENST00000564399 PHLPP2Q6ZVD8 1323 aa7.97□□□□□ -1.13
VPS4A-203ENST00000564399 STK36Q9NRP7 1315 aa7.97□□□□□ -1.13
VPS4A-203ENST00000564399 HELZ2Q9BYK8 2649 aaKnown RBP7.97□□□□□ -1.13
VPS4A-203ENST00000564399 KNTC1P50748 2209 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms