RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 ATP2C2O75185 946 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 ENDOD1O94919 500 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 LYPLA2O95372 231 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 FGBP02675 491 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 AMHP03971 560 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 CKMP06732 381 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 MYL4P12829 197 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 SDC4P31431 198 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 CCDC85BQ15834 202 aaPredicted RBP5.77□□□□□ -1.49
VPS13C-209ENST00000560637 HADHQ16836 314 aaKnown RBP5.77□□□□□ -1.49
VPS13C-209ENST00000560637 CDKAL1Q5VV42 579 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 PHLDB3Q6NSJ2 640 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 RBM43Q6ZSC3 357 aaKnown RBP5.77□□□□□ -1.49
VPS13C-209ENST00000560637 MAATS1Q7Z4T9 603 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 ZNF467Q7Z7K2 595 aaPredicted RBP5.77□□□□□ -1.49
VPS13C-209ENST00000560637 SCUBE3Q8IX30 993 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 MSL3Q8N5Y2 521 aaKnown RBP5.77□□□□□ -1.49
VPS13C-209ENST00000560637 NETO2Q8NC67 525 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 KCTD6Q8NC69 237 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 ZNF564Q8TBZ8 553 aaPredicted RBP5.77□□□□□ -1.49
VPS13C-209ENST00000560637 ATRIPQ8WXE1 791 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 NDRG1Q92597 394 aaKnown RBP5.77□□□□□ -1.49
VPS13C-209ENST00000560637 C18orf8Q96DM3 657 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 POM121Q96HA1 1249 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 FGD4Q96M96 766 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 MED15Q96RN5 788 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 NAA15Q9BXJ9 866 aaKnown RBP5.77□□□□□ -1.49
VPS13C-209ENST00000560637 STK33Q9BYT3 514 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 UBE2OQ9C0C9 1292 aaKnown RBP5.77□□□□□ -1.49
VPS13C-209ENST00000560637 KCNF1Q9H3M0 494 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 SLC28A3Q9HAS3 691 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 GPATCH2LQ9NWQ4 482 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 HCSTQ9UBK5 93 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 MYO6Q9UM54 1294 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 CAPN11Q9UMQ6 739 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 PCDHB12Q9Y5F1 795 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 SAR1BQ9Y6B6 198 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 COMMD10Q9Y6G5 202 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 SBF1O95248 1867 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 CNTNAP2Q9UHC6 1331 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 FER1L6Q2WGJ9 1857 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 A0A0B4J269 797 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 DPYSL4O14531 572 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 CLTBP09497 229 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 KRT3P12035 628 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 NCAM1P13591 858 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 PCSK1P29120 753 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 AFF1P51825 1210 aaKnown RBP5.77□□□□□ -1.49
VPS13C-209ENST00000560637 NCKAP1LP55160 1127 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 GJA9P57773 515 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 ETF1P62495 437 aaKnown RBP5.77□□□□□ -1.49
VPS13C-209ENST00000560637 VEPH1Q14D04 833 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 DNAJC21Q5F1R6 531 aaKnown RBP5.77□□□□□ -1.49
VPS13C-209ENST00000560637 HYIQ5T013 277 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 MAMDC4Q6UXC1 1216 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 PXYLP1Q8TE99 480 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 PDCD6IPQ8WUM4 868 aaKnown RBP5.77□□□□□ -1.49
VPS13C-209ENST00000560637 BADQ92934 168 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 HVCN1Q96D96 273 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 PRIMPOLQ96LW4 560 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 GCNAQ96QF7 691 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 SYT15Q9BQS2 421 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 THAP2Q9H0W7 228 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 EPC1Q9H2F5 836 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 BZW2Q9Y6E2 419 aaKnown RBP5.77□□□□□ -1.49
VPS13C-209ENST00000560637 SPTBN2O15020 2390 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 MYH7P12883 1935 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 DOCK3Q8IZD9 2030 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 FAM200BP0CF97 657 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 ODC1P11926 461 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 CCDC142Q17RM4 750 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 SLC10A6Q3KNW5 377 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 SLC24A5Q71RS6 500 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 WDR49Q8IV35 697 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 SLC7A14Q8TBB6 771 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 OSGEPQ9NPF4 335 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 METTL5Q9NRN9 209 aaKnown RBP5.77□□□□□ -1.49
VPS13C-209ENST00000560637 EHD2Q9NZN4 543 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 TSPAN16Q9UKR8 245 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 GNEQ9Y223 722 aaKnown RBP5.77□□□□□ -1.49
VPS13C-209ENST00000560637 CCDC78A2IDD5 438 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 CYP11B1P15538 503 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 RRM1P23921 792 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 OR1D2P34982 312 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 ALDH1A3P47895 512 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 GPC5P78333 572 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 SLC7A5Q01650 507 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 PTPN11Q06124 597 aaPredicted RBP5.76□□□□□ -1.49
VPS13C-209ENST00000560637 DDR2Q16832 855 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 C10orf120Q5SQS8 335 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 HP1BP3Q5SSJ5 553 aaPredicted RBP5.76□□□□□ -1.49
VPS13C-209ENST00000560637 C8orf74Q6P047 294 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 PRSS55Q6UWB4 352 aaPredicted RBP5.76□□□□□ -1.49
VPS13C-209ENST00000560637 ZNF571Q7Z3V5 609 aaPredicted RBP5.76□□□□□ -1.49
VPS13C-209ENST00000560637 ZC3H18Q86VM9 953 aaKnown RBP5.76□□□□□ -1.49
VPS13C-209ENST00000560637 FAM131BQ86XD5 332 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 EFCAB13Q8IY85 973 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 FIBCD1Q8N539 461 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 C1orf127Q8N9H9 656 aa5.76□□□□□ -1.49
VPS13C-209ENST00000560637 TRIM58Q8NG06 486 aa5.76□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms