RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 PTPRJQ12913 1337 aa11.96□□□□□ -0.5
CUX1-218ENST00000560541 GOLGA8SH3BPF8 625 aa11.95□□□□□ -0.5
CUX1-218ENST00000560541 GOLGA8MH3BSY2 632 aa11.95□□□□□ -0.5
CUX1-218ENST00000560541 ZNF862O60290 1169 aa11.95□□□□□ -0.5
CUX1-218ENST00000560541 BANF1O75531 89 aa11.95□□□□□ -0.5
CUX1-218ENST00000560541 ALDH3A1P30838 453 aa11.95□□□□□ -0.5
CUX1-218ENST00000560541 PIK3CAP42336 1068 aa11.95□□□□□ -0.5
CUX1-218ENST00000560541 CCDC89Q8N998 374 aa11.95□□□□□ -0.5
CUX1-218ENST00000560541 TMEM174Q8WUU8 243 aa11.95□□□□□ -0.5
CUX1-218ENST00000560541 L3MBTL3Q96JM7 780 aaPredicted RBP11.95□□□□□ -0.5
CUX1-218ENST00000560541 MAGEB18Q96M61 343 aa11.95□□□□□ -0.5
CUX1-218ENST00000560541 TMEM237Q96Q45 408 aa11.95□□□□□ -0.5
CUX1-218ENST00000560541 ETNK1Q9HBU6 452 aa11.95□□□□□ -0.5
CUX1-218ENST00000560541 SUN2Q9UH99 717 aa11.95□□□□□ -0.5
CUX1-218ENST00000560541 DNPEPQ9ULA0 475 aa11.95□□□□□ -0.5
CUX1-218ENST00000560541 PCDHB2Q9Y5E7 798 aa11.95□□□□□ -0.5
CUX1-218ENST00000560541 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.95□□□□□ -0.5
CUX1-218ENST00000560541 TLR3O15455 904 aaKnown RBP11.95□□□□□ -0.5
CUX1-218ENST00000560541 LYPLA2O95372 231 aa11.95□□□□□ -0.5
CUX1-218ENST00000560541 HLA-DRAP01903 254 aa11.95□□□□□ -0.5
CUX1-218ENST00000560541 MAN1A1P33908 653 aa11.95□□□□□ -0.5
CUX1-218ENST00000560541 RFC5P40937 340 aa11.95□□□□□ -0.5
CUX1-218ENST00000560541 MSH2P43246 934 aa11.95□□□□□ -0.5
CUX1-218ENST00000560541 INHBCP55103 352 aa11.95□□□□□ -0.5
CUX1-218ENST00000560541 RPL7AP62424 266 aaKnown RBP11.95□□□□□ -0.5
CUX1-218ENST00000560541 GCNT1Q02742 428 aa11.95□□□□□ -0.5
CUX1-218ENST00000560541 STRN3Q13033 797 aa11.95□□□□□ -0.5
CUX1-218ENST00000560541 SEZ6Q53EL9 994 aa11.95□□□□□ -0.5
CUX1-218ENST00000560541 MON1BQ7L1V2 547 aa11.95□□□□□ -0.5
CUX1-218ENST00000560541 MIPOL1Q8TD10 442 aa11.95□□□□□ -0.5
CUX1-218ENST00000560541 FNBP1Q96RU3 617 aa11.95□□□□□ -0.5
CUX1-218ENST00000560541 PRKAG3Q9UGI9 489 aa11.95□□□□□ -0.5
CUX1-218ENST00000560541 ZNF148Q9UQR1 794 aa11.95□□□□□ -0.5
CUX1-218ENST00000560541 NEU2Q9Y3R4 380 aa11.95□□□□□ -0.5
CUX1-218ENST00000560541 PCDHB4Q9Y5E5 795 aa11.95□□□□□ -0.5
CUX1-218ENST00000560541 KRT15P19012 456 aa11.95□□□□□ -0.5
CUX1-218ENST00000560541 SLC1A1P43005 524 aa11.95□□□□□ -0.5
CUX1-218ENST00000560541 NLRP11P59045 1033 aaKnown RBP11.95□□□□□ -0.5
CUX1-218ENST00000560541 RNASELQ05823 741 aaKnown RBP11.95□□□□□ -0.5
CUX1-218ENST00000560541 MAMLD1Q13495 774 aa11.95□□□□□ -0.5
CUX1-218ENST00000560541 RIPK1Q13546 671 aa11.95□□□□□ -0.5
CUX1-218ENST00000560541 MTFR1Q15390 333 aa11.95□□□□□ -0.5
CUX1-218ENST00000560541 WDR44Q5JSH3 913 aa11.95□□□□□ -0.5
CUX1-218ENST00000560541 TDRD10Q5VZ19 366 aaKnown RBP11.95□□□□□ -0.5
CUX1-218ENST00000560541 SYDE1Q6ZW31 735 aaPredicted RBP11.95□□□□□ -0.5
CUX1-218ENST00000560541 RHOT1Q8IXI2 618 aa11.95□□□□□ -0.5
CUX1-218ENST00000560541 OGFOD1Q8N543 542 aa11.95□□□□□ -0.5
CUX1-218ENST00000560541 SLC17A8Q8NDX2 589 aa11.95□□□□□ -0.5
CUX1-218ENST00000560541 TMC2Q8TDI7 906 aa11.95□□□□□ -0.5
CUX1-218ENST00000560541 ERP27Q96DN0 273 aa11.95□□□□□ -0.5
CUX1-218ENST00000560541 CCDC77Q9BR77 488 aa11.95□□□□□ -0.5
CUX1-218ENST00000560541 VPS37BQ9H9H4 285 aa11.95□□□□□ -0.5
CUX1-218ENST00000560541 AVENQ9NQS1 362 aaPredicted RBP11.95□□□□□ -0.5
CUX1-218ENST00000560541 SEPT9Q9UHD8 586 aaPredicted RBP11.95□□□□□ -0.5
CUX1-218ENST00000560541 ZNF510Q9Y2H8 683 aa11.95□□□□□ -0.5
CUX1-218ENST00000560541 FAM47DPA6NHR8 397 aa11.94□□□□□ -0.5
CUX1-218ENST00000560541 ONECUT3O60422 494 aaPredicted RBP11.94□□□□□ -0.5
CUX1-218ENST00000560541 SUPT3HO75486 399 aa11.94□□□□□ -0.5
CUX1-218ENST00000560541 IFNB1P01574 187 aa11.94□□□□□ -0.5
CUX1-218ENST00000560541 HARSP12081 509 aaKnown RBP11.94□□□□□ -0.5
CUX1-218ENST00000560541 DESP17661 470 aa11.94□□□□□ -0.5
CUX1-218ENST00000560541 TARSP26639 723 aaKnown RBP11.94□□□□□ -0.5
CUX1-218ENST00000560541 GNA15P30679 374 aa11.94□□□□□ -0.5
CUX1-218ENST00000560541 DEUP1Q05D60 604 aa11.94□□□□□ -0.5
CUX1-218ENST00000560541 SFSWAPQ12872 951 aaKnown RBP11.94□□□□□ -0.5
CUX1-218ENST00000560541 BRDTQ58F21 947 aaPredicted RBP11.94□□□□□ -0.5
CUX1-218ENST00000560541 ZBTB41Q5SVQ8 909 aa11.94□□□□□ -0.5
CUX1-218ENST00000560541 ARHGEF16Q5VV41 709 aa11.94□□□□□ -0.5
CUX1-218ENST00000560541 SWSAP1Q6NVH7 229 aa11.94□□□□□ -0.5
CUX1-218ENST00000560541 TMEM154Q6P9G4 183 aa11.94□□□□□ -0.5
CUX1-218ENST00000560541 TAS1R3Q7RTX0 852 aa11.94□□□□□ -0.5
CUX1-218ENST00000560541 KRT27Q7Z3Y8 459 aa11.94□□□□□ -0.5
CUX1-218ENST00000560541 USP37Q86T82 979 aa11.94□□□□□ -0.5
CUX1-218ENST00000560541 MCF2L2Q86YR7 1114 aa11.94□□□□□ -0.5
CUX1-218ENST00000560541 GBP7Q8N8V2 638 aaPredicted RBP11.94□□□□□ -0.5
CUX1-218ENST00000560541 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.94□□□□□ -0.5
CUX1-218ENST00000560541 SNRNP27Q8WVK2 155 aaKnown RBP11.94□□□□□ -0.5
CUX1-218ENST00000560541 FBXL18Q96ME1 805 aa11.94□□□□□ -0.5
CUX1-218ENST00000560541 PPP1R12CQ9BZL4 782 aa11.94□□□□□ -0.5
CUX1-218ENST00000560541 MYLK2Q9H1R3 596 aa11.94□□□□□ -0.5
CUX1-218ENST00000560541 LOXHD1Q8IVV2 1947 aa11.94□□□□□ -0.5
CUX1-218ENST00000560541 BPIFB4P59827 614 aa11.94□□□□□ -0.5
CUX1-218ENST00000560541 SNRPFP62306 86 aaKnown RBP11.94□□□□□ -0.5
CUX1-218ENST00000560541 CAV1Q03135 178 aa11.94□□□□□ -0.5
CUX1-218ENST00000560541 CENPCQ03188 943 aa11.94□□□□□ -0.5
CUX1-218ENST00000560541 PKN2Q16513 984 aaKnown RBP11.94□□□□□ -0.5
CUX1-218ENST00000560541 CCNG2Q16589 344 aa11.94□□□□□ -0.5
CUX1-218ENST00000560541 FAM182AQ5T1J6 154 aa11.94□□□□□ -0.5
CUX1-218ENST00000560541 CRELD2Q6UXH1 353 aaPredicted RBP11.94□□□□□ -0.5
CUX1-218ENST00000560541 NAF1Q96HR8 494 aaKnown RBP11.94□□□□□ -0.5
CUX1-218ENST00000560541 WNK4Q96J92 1243 aa11.94□□□□□ -0.5
CUX1-218ENST00000560541 ZBTB45Q96K62 511 aaPredicted RBP11.94□□□□□ -0.5
CUX1-218ENST00000560541 IFT74Q96LB3 600 aa11.94□□□□□ -0.5
CUX1-218ENST00000560541 PDCD2LQ9BRP1 358 aa11.94□□□□□ -0.5
CUX1-218ENST00000560541 NACA2Q9H009 215 aa11.94□□□□□ -0.5
CUX1-218ENST00000560541 C10orf88Q9H8K7 445 aa11.94□□□□□ -0.5
CUX1-218ENST00000560541 APOBEC3GQ9HC16 384 aaKnown RBP11.94□□□□□ -0.5
CUX1-218ENST00000560541 ARHGEF3Q9NR81 526 aa11.94□□□□□ -0.5
CUX1-218ENST00000560541 DLGAP2Q9P1A6 1054 aa11.94□□□□□ -0.5
CUX1-218ENST00000560541 LGALS13Q9UHV8 139 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms