RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 KMT5AQ9NQR1 393 aa11.94□□□□□ -0.5
LDLR-208ENST00000558518 ZHX2Q9Y6X8 837 aa11.94□□□□□ -0.5
LDLR-208ENST00000558518 MROH7Q68CQ1 1323 aa11.94□□□□□ -0.5
LDLR-208ENST00000558518 CYP3A7-CYP3A51PA0A087WV96 503 aa11.93□□□□□ -0.5
LDLR-208ENST00000558518 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.93□□□□□ -0.5
LDLR-208ENST00000558518 LOC100653049A0A140TA62 436 aa11.93□□□□□ -0.5
LDLR-208ENST00000558518 PIK3CDO00329 1044 aa11.93□□□□□ -0.5
LDLR-208ENST00000558518 KRT34O76011 436 aa11.93□□□□□ -0.5
LDLR-208ENST00000558518 DEUP1Q05D60 604 aa11.93□□□□□ -0.5
LDLR-208ENST00000558518 PDK4Q16654 411 aa11.93□□□□□ -0.5
LDLR-208ENST00000558518 CWF19L1Q69YN2 538 aaKnown RBP11.93□□□□□ -0.5
LDLR-208ENST00000558518 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.93□□□□□ -0.5
LDLR-208ENST00000558518 FBXO36Q8NEA4 188 aa11.93□□□□□ -0.5
LDLR-208ENST00000558518 SLC26A7Q8TE54 656 aa11.93□□□□□ -0.5
LDLR-208ENST00000558518 MAIP1Q8WWC4 291 aa11.93□□□□□ -0.5
LDLR-208ENST00000558518 PYDC1Q8WXC3 89 aa11.93□□□□□ -0.5
LDLR-208ENST00000558518 AGBL1Q96MI9 1066 aa11.93□□□□□ -0.5
LDLR-208ENST00000558518 TMEM206Q9H813 350 aa11.93□□□□□ -0.5
LDLR-208ENST00000558518 PSMC3IPQ9P2W1 217 aaPredicted RBP11.93□□□□□ -0.5
LDLR-208ENST00000558518 AVILO75366 819 aa11.93□□□□□ -0.5
LDLR-208ENST00000558518 PSMG1O95456 288 aa11.93□□□□□ -0.5
LDLR-208ENST00000558518 INHBAP08476 426 aa11.93□□□□□ -0.5
LDLR-208ENST00000558518 FDX1P10109 184 aa11.93□□□□□ -0.5
LDLR-208ENST00000558518 PYGBP11216 843 aa11.93□□□□□ -0.5
LDLR-208ENST00000558518 GZMAP12544 262 aa11.93□□□□□ -0.5
LDLR-208ENST00000558518 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.93□□□□□ -0.5
LDLR-208ENST00000558518 ANKRD22Q5VYY1 191 aa11.93□□□□□ -0.5
LDLR-208ENST00000558518 FIZ1Q96SL8 496 aa11.93□□□□□ -0.5
LDLR-208ENST00000558518 BTBD10Q9BSF8 475 aa11.93□□□□□ -0.5
LDLR-208ENST00000558518 NMUR2Q9GZQ4 415 aa11.93□□□□□ -0.5
LDLR-208ENST00000558518 RHBDL2Q9NX52 303 aa11.93□□□□□ -0.5
LDLR-208ENST00000558518 MAGED2Q9UNF1 606 aaPredicted RBP11.93□□□□□ -0.5
LDLR-208ENST00000558518 ADGRA3Q8IWK6 1321 aa11.93□□□□□ -0.5
LDLR-208ENST00000558518 SMAPO00193 183 aa11.93□□□□□ -0.5
LDLR-208ENST00000558518 TBX3O15119 743 aa11.93□□□□□ -0.5
LDLR-208ENST00000558518 GSC2O15499 205 aa11.93□□□□□ -0.5
LDLR-208ENST00000558518 CYP1A2P05177 515 aa11.93□□□□□ -0.5
LDLR-208ENST00000558518 CYP3A7P24462 503 aa11.93□□□□□ -0.5
LDLR-208ENST00000558518 GNA15P30679 374 aa11.93□□□□□ -0.5
LDLR-208ENST00000558518 RHBDF2Q6PJF5 856 aa11.93□□□□□ -0.5
LDLR-208ENST00000558518 HSPH1Q92598 858 aa11.93□□□□□ -0.5
LDLR-208ENST00000558518 ABTB1Q969K4 478 aaPredicted RBP11.93□□□□□ -0.5
LDLR-208ENST00000558518 TUFT1Q9NNX1 390 aa11.93□□□□□ -0.5
LDLR-208ENST00000558518 PI4KBQ9UBF8 816 aa11.93□□□□□ -0.5
LDLR-208ENST00000558518 LRRC42Q9Y546 428 aa11.93□□□□□ -0.5
LDLR-208ENST00000558518 MAD1L1Q9Y6D9 718 aa11.93□□□□□ -0.5
LDLR-208ENST00000558518 FCHO1O14526 889 aa11.92□□□□□ -0.5
LDLR-208ENST00000558518 TOM1L1O75674 476 aa11.92□□□□□ -0.5
LDLR-208ENST00000558518 PSMD10O75832 226 aa11.92□□□□□ -0.5
LDLR-208ENST00000558518 PDE5AO76074 875 aa11.92□□□□□ -0.5
LDLR-208ENST00000558518 GSTT1P30711 240 aa11.92□□□□□ -0.5
LDLR-208ENST00000558518 PEX6Q13608 980 aa11.92□□□□□ -0.5
LDLR-208ENST00000558518 CUL3Q13618 768 aa11.92□□□□□ -0.5
LDLR-208ENST00000558518 CYP1B1Q16678 543 aa11.92□□□□□ -0.5
LDLR-208ENST00000558518 TMEM132AQ24JP5 1023 aa11.92□□□□□ -0.5
LDLR-208ENST00000558518 CLEC16AQ2KHT3 1053 aa11.92□□□□□ -0.5
LDLR-208ENST00000558518 LRRC23Q53EV4 343 aaPredicted RBP11.92□□□□□ -0.5
LDLR-208ENST00000558518 IL31RAQ8NI17 732 aa11.92□□□□□ -0.5
LDLR-208ENST00000558518 ZNF333Q96JL9 665 aa11.92□□□□□ -0.5
LDLR-208ENST00000558518 AHCYL1O43865 530 aa11.92□□□□□ -0.5
LDLR-208ENST00000558518 YWHABP31946 246 aaKnown RBP11.92□□□□□ -0.5
LDLR-208ENST00000558518 DSG3P32926 999 aa11.92□□□□□ -0.5
LDLR-208ENST00000558518 MAN1A1P33908 653 aa11.92□□□□□ -0.5
LDLR-208ENST00000558518 ARL4CP56559 192 aa11.92□□□□□ -0.5
LDLR-208ENST00000558518 OSTNP61366 133 aa11.92□□□□□ -0.5
LDLR-208ENST00000558518 SLC34A1Q06495 639 aa11.92□□□□□ -0.5
LDLR-208ENST00000558518 RASA2Q15283 850 aa11.92□□□□□ -0.5
LDLR-208ENST00000558518 GRAMD1BQ3KR37 738 aa11.92□□□□□ -0.5
LDLR-208ENST00000558518 C1orf220Q5T0J3 134 aa11.92□□□□□ -0.5
LDLR-208ENST00000558518 FAM71DQ8N9W8 422 aa11.92□□□□□ -0.5
LDLR-208ENST00000558518 BBOF1Q8ND07 529 aa11.92□□□□□ -0.5
LDLR-208ENST00000558518 MKL1Q969V6 931 aa11.92□□□□□ -0.5
LDLR-208ENST00000558518 DDX27Q96GQ7 796 aaKnown RBP11.92□□□□□ -0.5
LDLR-208ENST00000558518 CCDC17Q96LX7 622 aa11.92□□□□□ -0.5
LDLR-208ENST00000558518 DNAJC5Q9H3Z4 198 aa11.92□□□□□ -0.5
LDLR-208ENST00000558518 KCNH7Q9NS40 1196 aa11.92□□□□□ -0.5
LDLR-208ENST00000558518 DMAC2Q9NW81 257 aa11.92□□□□□ -0.5
LDLR-208ENST00000558518 TAS2R1Q9NYW7 299 aa11.92□□□□□ -0.5
LDLR-208ENST00000558518 CYB561D2O14569 222 aa11.92□□□□□ -0.5
LDLR-208ENST00000558518 PGM3O95394 542 aa11.92□□□□□ -0.5
LDLR-208ENST00000558518 HOXA7P31268 230 aaPredicted RBP11.92□□□□□ -0.5
LDLR-208ENST00000558518 HSPA1LP34931 641 aa11.92□□□□□ -0.5
LDLR-208ENST00000558518 DMP1Q13316 513 aaPredicted RBP11.92□□□□□ -0.5
LDLR-208ENST00000558518 DGKZQ13574 1117 aa11.92□□□□□ -0.5
LDLR-208ENST00000558518 PARP6Q2NL67 630 aa11.92□□□□□ -0.5
LDLR-208ENST00000558518 RSPH3Q86UC2 560 aa11.92□□□□□ -0.5
LDLR-208ENST00000558518 NLRX1Q86UT6 975 aa11.92□□□□□ -0.5
LDLR-208ENST00000558518 SHKBP1Q8TBC3 707 aa11.92□□□□□ -0.5
LDLR-208ENST00000558518 DCAF4Q8WV16 495 aa11.92□□□□□ -0.5
LDLR-208ENST00000558518 CEP170P1Q96L14 293 aa11.92□□□□□ -0.5
LDLR-208ENST00000558518 PIH1D1Q9NWS0 290 aaKnown RBP11.92□□□□□ -0.5
LDLR-208ENST00000558518 LRCH1Q9Y2L9 728 aa11.92□□□□□ -0.5
LDLR-208ENST00000558518 DCCP43146 1447 aa11.91□□□□□ -0.5
LDLR-208ENST00000558518 LRP5O75197 1615 aa11.91□□□□□ -0.5
LDLR-208ENST00000558518 IGLV3-22A0A075B6J6 115 aa11.91□□□□□ -0.5
LDLR-208ENST00000558518 I3L4J1 428 aa11.91□□□□□ -0.5
LDLR-208ENST00000558518 ZMPSTE24O75844 475 aa11.91□□□□□ -0.5
LDLR-208ENST00000558518 CCNFP41002 786 aa11.91□□□□□ -0.5
LDLR-208ENST00000558518 RPS6KA3P51812 740 aa11.91□□□□□ -0.5
LDLR-208ENST00000558518 ROR2Q01974 943 aaKnown RBP11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms