RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 CCDC113Q9H0I3 377 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 ACTR5Q9H9F9 607 aaPredicted RBP7.7□□□□□ -1.18
VPS13C-206ENST00000558338 DDX56Q9NY93 547 aaKnown RBP7.7□□□□□ -1.18
VPS13C-206ENST00000558338 STRIP2Q9ULQ0 834 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 TMA7Q9Y2S6 64 aaKnown RBP7.7□□□□□ -1.18
VPS13C-206ENST00000558338 NUB1Q9Y5A7 615 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 PTPRJQ12913 1337 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 A0A0G2JLL6 359 aaPredicted RBP7.7□□□□□ -1.18
VPS13C-206ENST00000558338 FAM170AA1A519 330 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 SOWAHBA6NEL2 793 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 GRXCR2A6NFK2 248 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 ASAP2O43150 1006 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 MED7O43513 233 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 MSCO60682 206 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 TCEA3O75764 348 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 TJP3O95049 919 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 IL18RAPO95256 599 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 SHBGP04278 402 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 TMEM191BP0C7N4 346 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 FGFR4P22455 802 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 MMP8P22894 467 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 POLR2BP30876 1174 aaKnown RBP7.7□□□□□ -1.18
VPS13C-206ENST00000558338 CDH5P33151 784 aaPredicted RBP7.7□□□□□ -1.18
VPS13C-206ENST00000558338 KCNJ1P48048 391 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 WNT7BP56706 349 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 PIGHQ14442 188 aaPredicted RBP7.7□□□□□ -1.18
VPS13C-206ENST00000558338 SKIDA1Q1XH10 827 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 TNFAIP8L3Q5GJ75 292 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 TREML2Q5T2D2 321 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 GKAP1Q5VSY0 366 aaPredicted RBP7.7□□□□□ -1.18
VPS13C-206ENST00000558338 PRAMEF18Q5VWM3 479 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 DNAJC24Q6P3W2 148 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 DRICH1Q6PGQ1 229 aaPredicted RBP7.7□□□□□ -1.18
VPS13C-206ENST00000558338 GADL1Q6ZQY3 521 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 MMS22LQ6ZRQ5 1243 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 CCDC121Q6ZUS5 278 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 PRRT2Q7Z6L0 340 aaPredicted RBP7.7□□□□□ -1.18
VPS13C-206ENST00000558338 TAX1BP1Q86VP1 789 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 CCDC25Q86WR0 208 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 CPNE8Q86YQ8 564 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 RELL1Q8IUW5 271 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 RIBC1Q8N443 379 aaPredicted RBP7.7□□□□□ -1.18
VPS13C-206ENST00000558338 IPO4Q8TEX9 1081 aaKnown RBP7.7□□□□□ -1.18
VPS13C-206ENST00000558338 C1orf54Q8WWF1 131 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 PRPF31Q8WWY3 499 aaKnown RBP7.7□□□□□ -1.18
VPS13C-206ENST00000558338 RAPGEF5Q92565 580 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 CHMP6Q96FZ7 201 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 MS4A4AQ96JQ5 239 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 ZBTB45Q96K62 511 aaPredicted RBP7.7□□□□□ -1.18
VPS13C-206ENST00000558338 ACO2Q99798 780 aaKnown RBP7.7□□□□□ -1.18
VPS13C-206ENST00000558338 CCDC77Q9BR77 488 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 TCHPQ9BT92 498 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 FRMD8P1Q9BZ68 369 aaPredicted RBP7.7□□□□□ -1.18
VPS13C-206ENST00000558338 CDC42EP4Q9H3Q1 356 aaKnown RBP7.7□□□□□ -1.18
VPS13C-206ENST00000558338 SEMA4AQ9H3S1 761 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 RABEP2Q9H5N1 569 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 CCDC134Q9H6E4 229 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 BTBD7Q9P203 1132 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 ANAPC5Q9UJX4 755 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 PCDHGC3Q9UN70 934 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 TELO2Q9Y4R8 837 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 ZSWIM8A7E2V4 1837 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 IGKV6-21A0A0C4DH24 114 aa7.69□□□□□ -1.18
VPS13C-206ENST00000558338 GOLGA6L7A0A1B0GV03 622 aa7.69□□□□□ -1.18
VPS13C-206ENST00000558338 TLDC2A0PJX2 215 aa7.69□□□□□ -1.18
VPS13C-206ENST00000558338 SOCS7O14512 581 aa7.69□□□□□ -1.18
VPS13C-206ENST00000558338 CXCL11O14625 94 aa7.69□□□□□ -1.18
VPS13C-206ENST00000558338 B4GALT4O60513 344 aa7.69□□□□□ -1.18
VPS13C-206ENST00000558338 PEX14O75381 377 aa7.69□□□□□ -1.18
VPS13C-206ENST00000558338 FSBPO95073 299 aa7.69□□□□□ -1.18
VPS13C-206ENST00000558338 ABHD2P08910 425 aa7.69□□□□□ -1.18
VPS13C-206ENST00000558338 RALAP11233 206 aa7.69□□□□□ -1.18
VPS13C-206ENST00000558338 HARSP12081 509 aaKnown RBP7.69□□□□□ -1.18
VPS13C-206ENST00000558338 EIF4BP23588 611 aaKnown RBP7.69□□□□□ -1.18
VPS13C-206ENST00000558338 ADCY8P40145 1251 aa7.69□□□□□ -1.18
VPS13C-206ENST00000558338 SSR1P43307 286 aaKnown RBP7.69□□□□□ -1.18
VPS13C-206ENST00000558338 ITGA8P53708 1063 aa7.69□□□□□ -1.18
VPS13C-206ENST00000558338 SEC24CP53992 1094 aa7.69□□□□□ -1.18
VPS13C-206ENST00000558338 TAGLNQ01995 201 aaKnown RBP7.69□□□□□ -1.18
VPS13C-206ENST00000558338 LAMTOR4Q0VGL1 99 aa7.69□□□□□ -1.18
VPS13C-206ENST00000558338 SNX1Q13596 522 aa7.69□□□□□ -1.18
VPS13C-206ENST00000558338 KYAT1Q16773 422 aa7.69□□□□□ -1.18
VPS13C-206ENST00000558338 ZNF699Q32M78 642 aa7.69□□□□□ -1.18
VPS13C-206ENST00000558338 ZNF568Q3ZCX4 644 aa7.69□□□□□ -1.18
VPS13C-206ENST00000558338 ADGRD1Q6QNK2 874 aa7.69□□□□□ -1.18
VPS13C-206ENST00000558338 MPZL3Q6UWV2 235 aa7.69□□□□□ -1.18
VPS13C-206ENST00000558338 CPLX4Q7Z7G2 160 aa7.69□□□□□ -1.18
VPS13C-206ENST00000558338 PASD1Q8IV76 773 aa7.69□□□□□ -1.18
VPS13C-206ENST00000558338 SULF1Q8IWU6 871 aa7.69□□□□□ -1.18
VPS13C-206ENST00000558338 MICALL1Q8N3F8 863 aa7.69□□□□□ -1.18
VPS13C-206ENST00000558338 NIPA2Q8N8Q9 360 aa7.69□□□□□ -1.18
VPS13C-206ENST00000558338 ANKS4BQ8N8V4 417 aa7.69□□□□□ -1.18
VPS13C-206ENST00000558338 OR5B17Q8NGF7 314 aa7.69□□□□□ -1.18
VPS13C-206ENST00000558338 ZNF606Q8WXB4 792 aa7.69□□□□□ -1.18
VPS13C-206ENST00000558338 DCPSQ96C86 337 aaKnown RBP7.69□□□□□ -1.18
VPS13C-206ENST00000558338 TTC25Q96NG3 672 aa7.69□□□□□ -1.18
VPS13C-206ENST00000558338 UCN2Q96RP3 112 aa7.69□□□□□ -1.18
VPS13C-206ENST00000558338 PPCSQ9HAB8 311 aa7.69□□□□□ -1.18
VPS13C-206ENST00000558338 ADARB2Q9NS39 739 aaKnown RBP7.69□□□□□ -1.18
VPS13C-206ENST00000558338 CHST7Q9NS84 486 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms