RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 DNAJC3Q13217 504 aa13.63□□□□□ -0.23
LDLR-207ENST00000558013 TRIM50Q86XT4 487 aa13.63□□□□□ -0.23
LDLR-207ENST00000558013 TRIM11Q96F44 468 aa13.63□□□□□ -0.23
LDLR-207ENST00000558013 NSRP1Q9H0G5 558 aaKnown RBP13.63□□□□□ -0.23
LDLR-207ENST00000558013 MRPL47Q9HD33 250 aaKnown RBP13.63□□□□□ -0.23
LDLR-207ENST00000558013 PARVAQ9NVD7 372 aa13.63□□□□□ -0.23
LDLR-207ENST00000558013 STK38LQ9Y2H1 464 aa13.63□□□□□ -0.23
LDLR-207ENST00000558013 CEP350Q5VT06 3117 aa13.63□□□□□ -0.23
LDLR-207ENST00000558013 COL11A1P12107 1806 aaPredicted RBP13.63□□□□□ -0.23
LDLR-207ENST00000558013 EXOC1LA0A1B0GW35 172 aa13.62□□□□□ -0.23
LDLR-207ENST00000558013 A0A1W2PPM1 405 aa13.62□□□□□ -0.23
LDLR-207ENST00000558013 MAFGO15525 162 aa13.62□□□□□ -0.23
LDLR-207ENST00000558013 ARL2P36404 184 aa13.62□□□□□ -0.23
LDLR-207ENST00000558013 GDF10P55107 478 aa13.62□□□□□ -0.23
LDLR-207ENST00000558013 EFTUD2Q15029 972 aaKnown RBP eCLIP13.62□□□□□ -0.231e-6■■■■□ 19.3
LDLR-207ENST00000558013 GPAT2Q6NUI2 795 aa13.62□□□□□ -0.23
LDLR-207ENST00000558013 DCUN1D2Q6PH85 259 aa13.62□□□□□ -0.23
LDLR-207ENST00000558013 SYDE1Q6ZW31 735 aaPredicted RBP13.62□□□□□ -0.23
LDLR-207ENST00000558013 ZBED8Q8IZ13 594 aa13.62□□□□□ -0.23
LDLR-207ENST00000558013 KIRREL3Q8IZU9 778 aa13.62□□□□□ -0.23
LDLR-207ENST00000558013 MAIP1Q8WWC4 291 aa13.62□□□□□ -0.23
LDLR-207ENST00000558013 SLC7A3Q8WY07 619 aa13.62□□□□□ -0.23
LDLR-207ENST00000558013 CAMKK2Q96RR4 588 aa13.62□□□□□ -0.23
LDLR-207ENST00000558013 MAFBQ9Y5Q3 323 aaPredicted RBP13.62□□□□□ -0.23
LDLR-207ENST00000558013 ADGRA2Q96PE1 1338 aa13.62□□□□□ -0.23
LDLR-207ENST00000558013 KRT16P08779 473 aa13.62□□□□□ -0.23
LDLR-207ENST00000558013 ALDH5A1P51649 535 aaPredicted RBP13.62□□□□□ -0.23
LDLR-207ENST00000558013 TGFB2P61812 414 aa13.62□□□□□ -0.23
LDLR-207ENST00000558013 TNFAIP1Q13829 316 aa13.62□□□□□ -0.23
LDLR-207ENST00000558013 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.62□□□□□ -0.232e-6■■□□□ 12
LDLR-207ENST00000558013 SCYL3Q8IZE3 742 aa13.62□□□□□ -0.23
LDLR-207ENST00000558013 LRRC71Q8N4P6 559 aa13.62□□□□□ -0.23
LDLR-207ENST00000558013 ZCCHC9Q8N567 271 aaKnown RBP13.62□□□□□ -0.23
LDLR-207ENST00000558013 CEP120Q8N960 986 aa13.62□□□□□ -0.23
LDLR-207ENST00000558013 PRPF31Q8WWY3 499 aaKnown RBP13.62□□□□□ -0.23
LDLR-207ENST00000558013 P3H4Q92791 437 aa13.62□□□□□ -0.23
LDLR-207ENST00000558013 CGRRF1Q99675 332 aa13.62□□□□□ -0.23
LDLR-207ENST00000558013 VPS37BQ9H9H4 285 aa13.62□□□□□ -0.23
LDLR-207ENST00000558013 KIAA1586Q9HCI6 787 aa13.62□□□□□ -0.23
LDLR-207ENST00000558013 SUN1O94901 812 aa13.62□□□□□ -0.23
LDLR-207ENST00000558013 RPSAP08865 295 aaKnown RBP13.62□□□□□ -0.23
LDLR-207ENST00000558013 FGFR1P11362 822 aa13.62□□□□□ -0.23
LDLR-207ENST00000558013 MAN1A1P33908 653 aa13.62□□□□□ -0.23
LDLR-207ENST00000558013 MAP2K2P36507 400 aa13.62□□□□□ -0.23
LDLR-207ENST00000558013 RAP1GAPP47736 663 aa13.62□□□□□ -0.23
LDLR-207ENST00000558013 ECHDC2Q86YB7 292 aa13.62□□□□□ -0.23
LDLR-207ENST00000558013 KIAA0319LQ8IZA0 1049 aa13.62□□□□□ -0.23
LDLR-207ENST00000558013 TEX13BQ9BXU2 312 aa13.62□□□□□ -0.23
LDLR-207ENST00000558013 ZWILCHQ9H900 591 aa13.62□□□□□ -0.23
LDLR-207ENST00000558013 CISHQ9NSE2 258 aa13.62□□□□□ -0.23
LDLR-207ENST00000558013 MYH9P35579 1960 aaKnown RBP13.61□□□□□ -0.23
LDLR-207ENST00000558013 LOC102724159A0A0B4J2E5 919 aa13.61□□□□□ -0.23
LDLR-207ENST00000558013 CSDE1O75534 798 aaKnown RBP13.61□□□□□ -0.23
LDLR-207ENST00000558013 CD48P09326 243 aa13.61□□□□□ -0.23
LDLR-207ENST00000558013 RPA3P35244 121 aaPredicted RBP13.61□□□□□ -0.23
LDLR-207ENST00000558013 PWP2Q15269 919 aaKnown RBP13.61□□□□□ -0.23
LDLR-207ENST00000558013 GALNTL6Q49A17 601 aa13.61□□□□□ -0.23
LDLR-207ENST00000558013 ANKRD22Q5VYY1 191 aa13.61□□□□□ -0.23
LDLR-207ENST00000558013 SPOCD1Q6ZMY3 1216 aa13.61□□□□□ -0.23
LDLR-207ENST00000558013 DEFB132Q7Z7B7 95 aa13.61□□□□□ -0.23
LDLR-207ENST00000558013 EMC1Q8N766 993 aa13.61□□□□□ -0.23
LDLR-207ENST00000558013 STAMBPL1Q96FJ0 436 aa13.61□□□□□ -0.23
LDLR-207ENST00000558013 ACAD9Q9H845 621 aa13.61□□□□□ -0.23
LDLR-207ENST00000558013 PICK1Q9NRD5 415 aa13.61□□□□□ -0.23
LDLR-207ENST00000558013 PRKAG3Q9UGI9 489 aa13.61□□□□□ -0.23
LDLR-207ENST00000558013 AFG3L2Q9Y4W6 797 aa13.61□□□□□ -0.23
LDLR-207ENST00000558013 SGK1O00141 431 aa13.61□□□□□ -0.23
LDLR-207ENST00000558013 NFKBIEO00221 500 aa13.61□□□□□ -0.23
LDLR-207ENST00000558013 IL1R2P27930 398 aa13.61□□□□□ -0.23
LDLR-207ENST00000558013 RFC1P35251 1148 aaPredicted RBP13.61□□□□□ -0.23
LDLR-207ENST00000558013 NAMPTP43490 491 aa13.61□□□□□ -0.23
LDLR-207ENST00000558013 TFAMQ00059 246 aaKnown RBP13.61□□□□□ -0.23
LDLR-207ENST00000558013 C1QBPQ07021 282 aaKnown RBP13.61□□□□□ -0.23
LDLR-207ENST00000558013 TAF5Q15542 800 aa13.61□□□□□ -0.23
LDLR-207ENST00000558013 GNPTABQ3T906 1256 aa13.61□□□□□ -0.23
LDLR-207ENST00000558013 PREPLQ4J6C6 727 aaPredicted RBP13.61□□□□□ -0.23
LDLR-207ENST00000558013 MSS51Q4VC12 460 aa13.61□□□□□ -0.23
LDLR-207ENST00000558013 XRRA1Q6P2D8 792 aa13.61□□□□□ -0.23
LDLR-207ENST00000558013 CCDC91Q7Z6B0 441 aa13.61□□□□□ -0.23
LDLR-207ENST00000558013 ARFGAP1Q8N6T3 406 aa13.61□□□□□ -0.23
LDLR-207ENST00000558013 JOSD2Q8TAC2 188 aa13.61□□□□□ -0.23
LDLR-207ENST00000558013 CNKSR2Q8WXI2 1034 aa13.61□□□□□ -0.23
LDLR-207ENST00000558013 NKIRAS1Q9NYS0 192 aa13.61□□□□□ -0.23
LDLR-207ENST00000558013 IP6K2Q9UHH9 426 aa13.61□□□□□ -0.23
LDLR-207ENST00000558013 LGALS13Q9UHV8 139 aa13.61□□□□□ -0.23
LDLR-207ENST00000558013 CYTH4Q9UIA0 394 aa13.61□□□□□ -0.23
LDLR-207ENST00000558013 SPDYE16A6NNV3 312 aaPredicted RBP13.6□□□□□ -0.23
LDLR-207ENST00000558013 DNALI1O14645 258 aaPredicted RBP13.6□□□□□ -0.23
LDLR-207ENST00000558013 TCEA3O75764 348 aa13.6□□□□□ -0.23
LDLR-207ENST00000558013 CDH8P55286 799 aa13.6□□□□□ -0.23
LDLR-207ENST00000558013 CAV1Q03135 178 aa13.6□□□□□ -0.23
LDLR-207ENST00000558013 DNAJC24Q6P3W2 148 aa13.6□□□□□ -0.23
LDLR-207ENST00000558013 TMEM192Q8IY95 271 aa13.6□□□□□ -0.23
LDLR-207ENST00000558013 PITPNM3Q9BZ71 974 aa13.6□□□□□ -0.23
LDLR-207ENST00000558013 NXF1Q9UBU9 619 aaKnown RBP13.6□□□□□ -0.23
LDLR-207ENST00000558013 ADAMTS5Q9UNA0 930 aa13.6□□□□□ -0.23
LDLR-207ENST00000558013 POLIQ9UNA4 740 aa13.6□□□□□ -0.23
LDLR-207ENST00000558013 CNTN6Q9UQ52 1028 aa13.6□□□□□ -0.23
LDLR-207ENST00000558013 ARL2BPQ9Y2Y0 163 aa13.6□□□□□ -0.23
LDLR-207ENST00000558013 SCINQ9Y6U3 715 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms