RNA–Protein interactions for RNA: ENST00000557782.1

TDP1-217, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 318 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-217ENST00000557782 PIK3C3Q8NEB9 887 aa4.28□□□□□ -1.72
TDP1-217ENST00000557782 OR56A3Q8NH54 315 aa4.28□□□□□ -1.72
TDP1-217ENST00000557782 RSC1A1Q92681 617 aa4.28□□□□□ -1.72
TDP1-217ENST00000557782 GOLGA1Q92805 767 aa4.28□□□□□ -1.72
TDP1-217ENST00000557782 MISP3Q96FF7 219 aa4.28□□□□□ -1.72
TDP1-217ENST00000557782 NEIL1Q96FI4 390 aaPredicted RBP4.28□□□□□ -1.72
TDP1-217ENST00000557782 NAP1L5Q96NT1 182 aaPredicted RBP4.28□□□□□ -1.72
TDP1-217ENST00000557782 TRAPPC9Q96Q05 1148 aa4.28□□□□□ -1.72
TDP1-217ENST00000557782 TWNKQ96RR1 684 aa4.28□□□□□ -1.72
TDP1-217ENST00000557782 MPHOSPH8Q99549 860 aa4.28□□□□□ -1.72
TDP1-217ENST00000557782 C11orf54Q9H0W9 315 aaPredicted RBP4.28□□□□□ -1.72
TDP1-217ENST00000557782 PCDHAC1Q9H158 963 aa4.28□□□□□ -1.72
TDP1-217ENST00000557782 PDCL3Q9H2J4 239 aa4.28□□□□□ -1.72
TDP1-217ENST00000557782 TP63Q9H3D4 680 aaPredicted RBP4.28□□□□□ -1.72
TDP1-217ENST00000557782 GHITMQ9H3K2 345 aa4.28□□□□□ -1.72
TDP1-217ENST00000557782 PRDM8Q9NQV8 689 aa4.28□□□□□ -1.72
TDP1-217ENST00000557782 RLIMQ9NVW2 624 aa4.28□□□□□ -1.72
TDP1-217ENST00000557782 SPATA6Q9NWH7 488 aaPredicted RBP4.28□□□□□ -1.72
TDP1-217ENST00000557782 MOCS1Q9NZB8 636 aa4.28□□□□□ -1.72
TDP1-217ENST00000557782 GPRC5DQ9NZD1 345 aa4.28□□□□□ -1.72
TDP1-217ENST00000557782 PI4KBQ9UBF8 816 aa4.28□□□□□ -1.72
TDP1-217ENST00000557782 CFDP1Q9UEE9 299 aaPredicted RBP4.28□□□□□ -1.72
TDP1-217ENST00000557782 MAGEL2Q9UJ55 1249 aa4.28□□□□□ -1.72
TDP1-217ENST00000557782 VAV3Q9UKW4 847 aa4.28□□□□□ -1.72
TDP1-217ENST00000557782 ZMYND8Q9ULU4 1186 aaPredicted RBP4.28□□□□□ -1.72
TDP1-217ENST00000557782 RRP7AQ9Y3A4 280 aaKnown RBP4.28□□□□□ -1.72
TDP1-217ENST00000557782 PLEKHM1Q9Y4G2 1056 aa4.28□□□□□ -1.72
TDP1-217ENST00000557782 A0A087WWL8 130 aa4.27□□□□□ -1.73
TDP1-217ENST00000557782 TMEM233B4DJY2 109 aa4.27□□□□□ -1.73
TDP1-217ENST00000557782 H0Y3Z8 333 aa4.27□□□□□ -1.73
TDP1-217ENST00000557782 GRM6O15303 877 aa4.27□□□□□ -1.73
TDP1-217ENST00000557782 P4HA2O15460 535 aa4.27□□□□□ -1.73
TDP1-217ENST00000557782 DOK2O60496 412 aa4.27□□□□□ -1.73
TDP1-217ENST00000557782 URI1O94763 535 aaPredicted RBP4.27□□□□□ -1.73
TDP1-217ENST00000557782 UNC5CO95185 931 aa4.27□□□□□ -1.73
TDP1-217ENST00000557782 DNTTP04053 509 aa4.27□□□□□ -1.73
TDP1-217ENST00000557782 GRPP07492 148 aa4.27□□□□□ -1.73
TDP1-217ENST00000557782 BTF3P20290 206 aaKnown RBP4.27□□□□□ -1.73
TDP1-217ENST00000557782 ACVR2AP27037 513 aa4.27□□□□□ -1.73
TDP1-217ENST00000557782 PCSK1P29120 753 aa4.27□□□□□ -1.73
TDP1-217ENST00000557782 CTNNA1P35221 906 aaKnown RBP4.27□□□□□ -1.73
TDP1-217ENST00000557782 PTPN7P35236 360 aa4.27□□□□□ -1.73
TDP1-217ENST00000557782 SLC11A2P49281 568 aa4.27□□□□□ -1.73
TDP1-217ENST00000557782 CCR9P51686 369 aa4.27□□□□□ -1.73
TDP1-217ENST00000557782 SEC24CP53992 1094 aa4.27□□□□□ -1.73
TDP1-217ENST00000557782 PNLIPRP1P54315 467 aa4.27□□□□□ -1.73
TDP1-217ENST00000557782 BCAT1P54687 386 aa4.27□□□□□ -1.73
TDP1-217ENST00000557782 CALD1Q05682 793 aaKnown RBP4.27□□□□□ -1.73
TDP1-217ENST00000557782 KHDRBS1Q07666 443 aaKnown RBP eCLIP4.27□□□□□ -1.73
TDP1-217ENST00000557782 NSUN2Q08J23 767 aaKnown RBP eCLIP4.27□□□□□ -1.73
TDP1-217ENST00000557782 TARBP2Q15633 366 aaKnown RBP4.27□□□□□ -1.73
TDP1-217ENST00000557782 ZNF827Q17R98 1081 aa4.27□□□□□ -1.73
TDP1-217ENST00000557782 SLC5A9Q2M3M2 681 aa4.27□□□□□ -1.73
TDP1-217ENST00000557782 WDR72Q3MJ13 1102 aa4.27□□□□□ -1.73
TDP1-217ENST00000557782 RILPL1Q5EBL4 403 aa4.27□□□□□ -1.73
TDP1-217ENST00000557782 EEF1AKMT2Q5JPI9 291 aaKnown RBP4.27□□□□□ -1.73
TDP1-217ENST00000557782 TMTC4Q5T4D3 741 aa4.27□□□□□ -1.73
TDP1-217ENST00000557782 ATG16L1Q676U5 607 aa4.27□□□□□ -1.73
TDP1-217ENST00000557782 MRNIPQ6NTE8 343 aa4.27□□□□□ -1.73
TDP1-217ENST00000557782 NFRKBQ6P4R8 1299 aa4.27□□□□□ -1.73
TDP1-217ENST00000557782 TMC5Q6UXY8 1006 aa4.27□□□□□ -1.73
TDP1-217ENST00000557782 LIPIQ6XZB0 460 aa4.27□□□□□ -1.73
TDP1-217ENST00000557782 KIAA0408Q6ZU52 694 aa4.27□□□□□ -1.73
TDP1-217ENST00000557782 GET4Q7L5D6 327 aaPredicted RBP4.27□□□□□ -1.73
TDP1-217ENST00000557782 OTOP2Q7RTS6 562 aa4.27□□□□□ -1.73
TDP1-217ENST00000557782 CHD1LQ86WJ1 897 aa4.27□□□□□ -1.73
TDP1-217ENST00000557782 AMIGO3Q86WK7 504 aa4.27□□□□□ -1.73
TDP1-217ENST00000557782 PLXDC1Q8IUK5 500 aa4.27□□□□□ -1.73
TDP1-217ENST00000557782 RPAP2Q8IXW5 612 aaPredicted RBP4.27□□□□□ -1.73
TDP1-217ENST00000557782 NRSN1Q8IZ57 195 aa4.27□□□□□ -1.73
TDP1-217ENST00000557782 TRMT2AQ8IZ69 625 aaKnown RBP4.27□□□□□ -1.73
TDP1-217ENST00000557782 SLC15A4Q8N697 577 aa4.27□□□□□ -1.73
TDP1-217ENST00000557782 AOPEPQ8N6M6 819 aa4.27□□□□□ -1.73
TDP1-217ENST00000557782 SCAMP5Q8TAC9 235 aa4.27□□□□□ -1.73
TDP1-217ENST00000557782 SHKBP1Q8TBC3 707 aa4.27□□□□□ -1.73
TDP1-217ENST00000557782 CFHR4Q92496 578 aa4.27□□□□□ -1.73
TDP1-217ENST00000557782 DDX17Q92841 729 aaKnown RBP4.27□□□□□ -1.73
TDP1-217ENST00000557782 ATP2A3Q93084 1043 aa4.27□□□□□ -1.73
TDP1-217ENST00000557782 ASB2Q96Q27 587 aa4.27□□□□□ -1.73
TDP1-217ENST00000557782 PPP1R9BQ96SB3 815 aa4.27□□□□□ -1.73
TDP1-217ENST00000557782 BAG1Q99933 345 aaPredicted RBP4.27□□□□□ -1.73
TDP1-217ENST00000557782 SSBP4Q9BWG4 385 aaPredicted RBP4.27□□□□□ -1.73
TDP1-217ENST00000557782 PACSIN1Q9BY11 444 aa4.27□□□□□ -1.73
TDP1-217ENST00000557782 TWSG1Q9GZX9 223 aa4.27□□□□□ -1.73
TDP1-217ENST00000557782 LPAR3Q9UBY5 353 aa4.27□□□□□ -1.73
TDP1-217ENST00000557782 TBC1D29Q9UFV1 150 aa4.27□□□□□ -1.73
TDP1-217ENST00000557782 GPR160Q9UJ42 338 aa4.27□□□□□ -1.73
TDP1-217ENST00000557782 RUVBL1Q9Y265 456 aaKnown RBP4.27□□□□□ -1.73
TDP1-217ENST00000557782 FRMD4BQ9Y2L6 1034 aa4.27□□□□□ -1.73
TDP1-217ENST00000557782 ACTL7AQ9Y615 435 aa4.27□□□□□ -1.73
TDP1-217ENST00000557782 A0A087WZ62 844 aa4.26□□□□□ -1.73
TDP1-217ENST00000557782 A0A0G2JNJ9 132 aa4.26□□□□□ -1.73
TDP1-217ENST00000557782 RAB27BO00194 218 aa4.26□□□□□ -1.73
TDP1-217ENST00000557782 PSPNO60542 156 aa4.26□□□□□ -1.73
TDP1-217ENST00000557782 TSPAN3O60637 253 aa4.26□□□□□ -1.73
TDP1-217ENST00000557782 COQ9O75208 318 aa4.26□□□□□ -1.73
TDP1-217ENST00000557782 ARHGEF15O94989 841 aa4.26□□□□□ -1.73
TDP1-217ENST00000557782 APOA4P06727 396 aa4.26□□□□□ -1.73
TDP1-217ENST00000557782 CNPP09543 421 aaKnown RBP4.26□□□□□ -1.73
TDP1-217ENST00000557782 XRCC6P12956 609 aaKnown RBP eCLIP4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms