RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 TTLL1O95922 423 aa14.5□□□□□ -0.09
SHMT2-226ENST00000556825 FGGP02679 453 aa14.5□□□□□ -0.09
SHMT2-226ENST00000556825 CCNE1P24864 410 aa14.5□□□□□ -0.09
SHMT2-226ENST00000556825 ETFBP38117 255 aa14.5□□□□□ -0.09
SHMT2-226ENST00000556825 HIRAP54198 1017 aaPredicted RBP14.5□□□□□ -0.09
SHMT2-226ENST00000556825 HAND2P61296 217 aa14.5□□□□□ -0.09
SHMT2-226ENST00000556825 IRX4P78413 519 aa14.5□□□□□ -0.09
SHMT2-226ENST00000556825 BASP1P80723 227 aaKnown RBP14.5□□□□□ -0.09
SHMT2-226ENST00000556825 MAPK7Q13164 816 aa14.5□□□□□ -0.09
SHMT2-226ENST00000556825 SPARCL1Q14515 664 aa14.5□□□□□ -0.09
SHMT2-226ENST00000556825 WTAPQ15007 396 aa14.5□□□□□ -0.09
SHMT2-226ENST00000556825 GRIK5Q16478 980 aa14.5□□□□□ -0.09
SHMT2-226ENST00000556825 AKAP4Q5JQC9 854 aa14.5□□□□□ -0.09
SHMT2-226ENST00000556825 C1orf146Q5VVC0 180 aa14.5□□□□□ -0.09
SHMT2-226ENST00000556825 ITPRIPL1Q6GPH6 555 aa14.5□□□□□ -0.09
SHMT2-226ENST00000556825 TUBA3EQ6PEY2 450 aa14.5□□□□□ -0.09
SHMT2-226ENST00000556825 APOA5Q6Q788 366 aa14.5□□□□□ -0.09
SHMT2-226ENST00000556825 HACE1Q8IYU2 909 aa14.5□□□□□ -0.09
SHMT2-226ENST00000556825 SPARTQ8N0X7 666 aa14.5□□□□□ -0.09
SHMT2-226ENST00000556825 ANGPTL6Q8NI99 470 aa14.5□□□□□ -0.09
SHMT2-226ENST00000556825 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.5□□□□□ -0.09
SHMT2-226ENST00000556825 OXER1Q8TDS5 423 aa14.5□□□□□ -0.09
SHMT2-226ENST00000556825 FAR2Q96K12 515 aa14.5□□□□□ -0.09
SHMT2-226ENST00000556825 DHRS9Q9BPW9 319 aa14.5□□□□□ -0.09
SHMT2-226ENST00000556825 GOLPH3Q9H4A6 298 aa14.5□□□□□ -0.09
SHMT2-226ENST00000556825 RNF41Q9H4P4 317 aaPredicted RBP14.5□□□□□ -0.09
SHMT2-226ENST00000556825 DNAJC17Q9NVM6 304 aaKnown RBP14.5□□□□□ -0.09
SHMT2-226ENST00000556825 ARMC1Q9NVT9 282 aa14.5□□□□□ -0.09
SHMT2-226ENST00000556825 TMOD2Q9NZR1 351 aa14.5□□□□□ -0.09
SHMT2-226ENST00000556825 KANSL3Q9P2N6 904 aa14.5□□□□□ -0.09
SHMT2-226ENST00000556825 ADAMTS6Q9UKP5 1117 aa14.5□□□□□ -0.09
SHMT2-226ENST00000556825 MTMR7Q9Y216 660 aa14.5□□□□□ -0.09
SHMT2-226ENST00000556825 MAST3O60307 1309 aa14.5□□□□□ -0.09
SHMT2-226ENST00000556825 PCDH11YQ9BZA8 1340 aa14.5□□□□□ -0.09
SHMT2-226ENST00000556825 PHRF1Q9P1Y6 1649 aaKnown RBP14.5□□□□□ -0.09
SHMT2-226ENST00000556825 RGPD2P0DJD1 1756 aa14.49□□□□□ -0.09
SHMT2-226ENST00000556825 TSPAN9O75954 239 aa14.49□□□□□ -0.09
SHMT2-226ENST00000556825 INHBBP09529 407 aa14.49□□□□□ -0.09
SHMT2-226ENST00000556825 PDE6AP16499 860 aa14.49□□□□□ -0.09
SHMT2-226ENST00000556825 NAGAP17050 411 aa14.49□□□□□ -0.09
SHMT2-226ENST00000556825 PEX2P28328 305 aa14.49□□□□□ -0.09
SHMT2-226ENST00000556825 CHKAP35790 457 aa14.49□□□□□ -0.09
SHMT2-226ENST00000556825 RPL21P46778 160 aaKnown RBP14.49□□□□□ -0.09
SHMT2-226ENST00000556825 SGO2Q562F6 1265 aa14.49□□□□□ -0.09
SHMT2-226ENST00000556825 PLEKHG4Q58EX7 1191 aa14.49□□□□□ -0.09
SHMT2-226ENST00000556825 C10orf76Q5T2E6 689 aa14.49□□□□□ -0.09
SHMT2-226ENST00000556825 SLC30A10Q6XR72 485 aa14.49□□□□□ -0.09
SHMT2-226ENST00000556825 RNF111Q6ZNA4 994 aa14.49□□□□□ -0.09
SHMT2-226ENST00000556825 SLFN11Q7Z7L1 901 aa14.49□□□□□ -0.09
SHMT2-226ENST00000556825 SRRM1Q8IYB3 904 aaKnown RBP14.49□□□□□ -0.09
SHMT2-226ENST00000556825 GIMAP8Q8ND71 665 aaPredicted RBP14.49□□□□□ -0.09
SHMT2-226ENST00000556825 HELQQ8TDG4 1101 aa14.49□□□□□ -0.09
SHMT2-226ENST00000556825 P2RX5Q93086 422 aa14.49□□□□□ -0.09
SHMT2-226ENST00000556825 TAMM41Q96BW9 452 aa14.49□□□□□ -0.09
SHMT2-226ENST00000556825 TMA16Q96EY4 203 aaKnown RBP14.49□□□□□ -0.09
SHMT2-226ENST00000556825 AIFM2Q9BRQ8 373 aa14.49□□□□□ -0.09
SHMT2-226ENST00000556825 KLHL25Q9H0H3 589 aa14.49□□□□□ -0.09
SHMT2-226ENST00000556825 NPHS2Q9NP85 383 aa14.49□□□□□ -0.09
SHMT2-226ENST00000556825 FAM217BQ9NTX9 383 aaPredicted RBP14.49□□□□□ -0.09
SHMT2-226ENST00000556825 HEY2Q9UBP5 337 aa14.49□□□□□ -0.09
SHMT2-226ENST00000556825 A0A087X0T9 212 aa14.49□□□□□ -0.09
SHMT2-226ENST00000556825 SFI1A8K8P3 1242 aa14.49□□□□□ -0.09
SHMT2-226ENST00000556825 SYCE1LA8MT33 242 aa14.49□□□□□ -0.09
SHMT2-226ENST00000556825 ATMINO43313 823 aaPredicted RBP14.49□□□□□ -0.09
SHMT2-226ENST00000556825 UFL1O94874 794 aa14.49□□□□□ -0.09
SHMT2-226ENST00000556825 FAM228BP0C875 321 aa14.49□□□□□ -0.09
SHMT2-226ENST00000556825 ZNF23P17027 643 aa14.49□□□□□ -0.09
SHMT2-226ENST00000556825 M6PRP20645 277 aa14.49□□□□□ -0.09
SHMT2-226ENST00000556825 ALDH3B2P48448 385 aa14.49□□□□□ -0.09
SHMT2-226ENST00000556825 ARSHQ5FYA8 562 aa14.49□□□□□ -0.09
SHMT2-226ENST00000556825 ANKRD40Q6AI12 368 aa14.49□□□□□ -0.09
SHMT2-226ENST00000556825 NXNQ6DKJ4 435 aa14.49□□□□□ -0.09
SHMT2-226ENST00000556825 ULK2Q8IYT8 1036 aa14.49□□□□□ -0.09
SHMT2-226ENST00000556825 DDX51Q8N8A6 666 aaKnown RBP eCLIP14.49□□□□□ -0.09
SHMT2-226ENST00000556825 DENND1AQ8TEH3 1009 aa14.49□□□□□ -0.09
SHMT2-226ENST00000556825 SNX29Q8TEQ0 813 aa14.49□□□□□ -0.09
SHMT2-226ENST00000556825 MTBPQ96DY7 904 aa14.49□□□□□ -0.09
SHMT2-226ENST00000556825 CDHR1Q96JP9 859 aa14.49□□□□□ -0.09
SHMT2-226ENST00000556825 C12orf4Q9NQ89 552 aa14.49□□□□□ -0.09
SHMT2-226ENST00000556825 PCDHA4Q9UN74 947 aa14.49□□□□□ -0.09
SHMT2-226ENST00000556825 ERGIC3Q9Y282 383 aa14.49□□□□□ -0.09
SHMT2-226ENST00000556825 B3GNT3Q9Y2A9 372 aa14.49□□□□□ -0.09
SHMT2-226ENST00000556825 PCDHGA8Q9Y5G5 932 aa14.49□□□□□ -0.09
SHMT2-226ENST00000556825 EMSYQ7Z589 1322 aa14.49□□□□□ -0.09
SHMT2-226ENST00000556825 SLIT3O75094 1523 aa14.48□□□□□ -0.09
SHMT2-226ENST00000556825 POTECB2RU33 542 aa14.48□□□□□ -0.09
SHMT2-226ENST00000556825 PODXLO00592 558 aa14.48□□□□□ -0.09
SHMT2-226ENST00000556825 CASQ2O14958 399 aaPredicted RBP14.48□□□□□ -0.09
SHMT2-226ENST00000556825 CLOCKO15516 846 aa14.48□□□□□ -0.09
SHMT2-226ENST00000556825 ZBTB43O43298 467 aa14.48□□□□□ -0.09
SHMT2-226ENST00000556825 TLR2O60603 784 aa14.48□□□□□ -0.09
SHMT2-226ENST00000556825 DNAJA2O60884 412 aa14.48□□□□□ -0.09
SHMT2-226ENST00000556825 KCNJ13O60928 360 aa14.48□□□□□ -0.09
SHMT2-226ENST00000556825 PTGIRP43119 386 aa14.48□□□□□ -0.09
SHMT2-226ENST00000556825 ATP6V0D1P61421 351 aa14.48□□□□□ -0.09
SHMT2-226ENST00000556825 CDK18Q07002 472 aa14.48□□□□□ -0.09
SHMT2-226ENST00000556825 TNNI3KQ59H18 835 aa14.48□□□□□ -0.09
SHMT2-226ENST00000556825 PAOXQ6QHF9 649 aa14.48□□□□□ -0.09
SHMT2-226ENST00000556825 KIF6Q6ZMV9 814 aa14.48□□□□□ -0.09
SHMT2-226ENST00000556825 SRBD1Q8N5C6 995 aaKnown RBP14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms