RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 C8AP07357 584 aa12.28□□□□□ -0.44
CCDC88C-212ENST00000556767 WEE2P0C1S8 567 aa12.28□□□□□ -0.44
CCDC88C-212ENST00000556767 ACAT1P24752 427 aaKnown RBP12.28□□□□□ -0.44
CCDC88C-212ENST00000556767 CDR1P51861 262 aa12.28□□□□□ -0.44
CCDC88C-212ENST00000556767 TSPY1Q01534 308 aa12.28□□□□□ -0.44
CCDC88C-212ENST00000556767 ADCY1Q08828 1119 aa12.28□□□□□ -0.44
CCDC88C-212ENST00000556767 SMAD4Q13485 552 aaKnown RBP12.28□□□□□ -0.44
CCDC88C-212ENST00000556767 SOWAHAQ2M3V2 549 aa12.28□□□□□ -0.44
CCDC88C-212ENST00000556767 KLHL40Q2TBA0 621 aa12.28□□□□□ -0.44
CCDC88C-212ENST00000556767 PUS10Q3MIT2 529 aaKnown RBP12.28□□□□□ -0.44
CCDC88C-212ENST00000556767 PPM1LQ5SGD2 360 aa12.28□□□□□ -0.44
CCDC88C-212ENST00000556767 LILRA6Q6PI73 481 aa12.28□□□□□ -0.44
CCDC88C-212ENST00000556767 SCARA5Q6ZMJ2 495 aa12.28□□□□□ -0.44
CCDC88C-212ENST00000556767 C15orf39Q6ZRI6 1047 aa12.28□□□□□ -0.44
CCDC88C-212ENST00000556767 DPH6Q7L8W6 267 aa12.28□□□□□ -0.44
CCDC88C-212ENST00000556767 TMEM86AQ8N2M4 240 aa12.28□□□□□ -0.44
CCDC88C-212ENST00000556767 OR10T2Q8NGX3 314 aa12.28□□□□□ -0.44
CCDC88C-212ENST00000556767 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.28□□□□□ -0.44
CCDC88C-212ENST00000556767 SLC7A14Q8TBB6 771 aa12.28□□□□□ -0.44
CCDC88C-212ENST00000556767 TMEM209Q96SK2 561 aa12.28□□□□□ -0.44
CCDC88C-212ENST00000556767 XYLT2Q9H1B5 865 aa12.28□□□□□ -0.44
CCDC88C-212ENST00000556767 SNX25Q9H3E2 840 aa12.28□□□□□ -0.44
CCDC88C-212ENST00000556767 PIDD1Q9HB75 910 aa12.28□□□□□ -0.44
CCDC88C-212ENST00000556767 CYP4F11Q9HBI6 524 aa12.28□□□□□ -0.44
CCDC88C-212ENST00000556767 MAGEC2Q9UBF1 373 aaPredicted RBP12.28□□□□□ -0.44
CCDC88C-212ENST00000556767 FBXW11Q9UKB1 542 aa12.28□□□□□ -0.44
CCDC88C-212ENST00000556767 CHD7Q9P2D1 2997 aa12.28□□□□□ -0.44
CCDC88C-212ENST00000556767 CCDC195A0A1B0GUA6 201 aa12.27□□□□□ -0.45
CCDC88C-212ENST00000556767 GRXCR2A6NFK2 248 aa12.27□□□□□ -0.45
CCDC88C-212ENST00000556767 MBTPS2O43462 519 aa12.27□□□□□ -0.45
CCDC88C-212ENST00000556767 RFPL2O75678 378 aa12.27□□□□□ -0.45
CCDC88C-212ENST00000556767 ZMYND10O75800 440 aa12.27□□□□□ -0.45
CCDC88C-212ENST00000556767 STAU1O95793 577 aaKnown RBP12.27□□□□□ -0.45
CCDC88C-212ENST00000556767 C1RP00736 705 aa12.27□□□□□ -0.45
CCDC88C-212ENST00000556767 P4HA1P13674 534 aa12.27□□□□□ -0.45
CCDC88C-212ENST00000556767 IL9P15248 144 aa12.27□□□□□ -0.45
CCDC88C-212ENST00000556767 LHX1P48742 406 aa12.27□□□□□ -0.45
CCDC88C-212ENST00000556767 HSP90AA4PQ58FG1 418 aa12.27□□□□□ -0.45
CCDC88C-212ENST00000556767 CT47A1Q5JQC4 288 aaPredicted RBP12.27□□□□□ -0.45
CCDC88C-212ENST00000556767 ATAT1Q5SQI0 421 aa12.27□□□□□ -0.45
CCDC88C-212ENST00000556767 TPGS2Q68CL5 300 aa12.27□□□□□ -0.45
CCDC88C-212ENST00000556767 SPOPLQ6IQ16 392 aa12.27□□□□□ -0.45
CCDC88C-212ENST00000556767 RNF19BQ6ZMZ0 732 aa12.27□□□□□ -0.45
CCDC88C-212ENST00000556767 CCDC149Q6ZUS6 474 aa12.27□□□□□ -0.45
CCDC88C-212ENST00000556767 OSTM1Q86WC4 334 aa12.27□□□□□ -0.45
CCDC88C-212ENST00000556767 FAM114A1Q8IWE2 563 aa12.27□□□□□ -0.45
CCDC88C-212ENST00000556767 DCP1BQ8IZD4 617 aaKnown RBP12.27□□□□□ -0.45
CCDC88C-212ENST00000556767 SMRP1Q8NCR6 262 aa12.27□□□□□ -0.45
CCDC88C-212ENST00000556767 FBXL13Q8NEE6 735 aa12.27□□□□□ -0.45
CCDC88C-212ENST00000556767 OR6B3Q8NGW1 331 aa12.27□□□□□ -0.45
CCDC88C-212ENST00000556767 HDAC7Q8WUI4 952 aa12.27□□□□□ -0.45
CCDC88C-212ENST00000556767 TAF4BQ92750 862 aa12.27□□□□□ -0.45
CCDC88C-212ENST00000556767 SLC35C1Q96A29 364 aa12.27□□□□□ -0.45
CCDC88C-212ENST00000556767 CNOT6LQ96LI5 555 aaKnown RBP12.27□□□□□ -0.45
CCDC88C-212ENST00000556767 MED15Q96RN5 788 aa12.27□□□□□ -0.45
CCDC88C-212ENST00000556767 RTP3Q9BQQ7 232 aa12.27□□□□□ -0.45
CCDC88C-212ENST00000556767 MRPL45Q9BRJ2 306 aaKnown RBP12.27□□□□□ -0.45
CCDC88C-212ENST00000556767 ADAM7Q9H2U9 754 aa12.27□□□□□ -0.45
CCDC88C-212ENST00000556767 AFF4Q9UHB7 1163 aaKnown RBP12.27□□□□□ -0.45
CCDC88C-212ENST00000556767 CDH22Q9UJ99 828 aa12.27□□□□□ -0.45
CCDC88C-212ENST00000556767 USP15Q9Y4E8 981 aaPredicted RBP12.27□□□□□ -0.45
CCDC88C-212ENST00000556767 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.27□□□□□ -0.45
CCDC88C-212ENST00000556767 TSC2P49815 1807 aa12.27□□□□□ -0.45
CCDC88C-212ENST00000556767 BRWD1Q9NSI6 2320 aa12.26□□□□□ -0.45
CCDC88C-212ENST00000556767 CCL16O15467 120 aa12.26□□□□□ -0.45
CCDC88C-212ENST00000556767 HCRTO43612 131 aa12.26□□□□□ -0.45
CCDC88C-212ENST00000556767 N4BP1O75113 896 aaKnown RBP12.26□□□□□ -0.45
CCDC88C-212ENST00000556767 ABLIM3O94929 683 aa12.26□□□□□ -0.45
CCDC88C-212ENST00000556767 ASS1P00966 412 aaKnown RBP12.26□□□□□ -0.45
CCDC88C-212ENST00000556767 LRG1P02750 347 aa12.26□□□□□ -0.45
CCDC88C-212ENST00000556767 PDGFRBP09619 1106 aa12.26□□□□□ -0.45
CCDC88C-212ENST00000556767 ATF2P15336 505 aa12.26□□□□□ -0.45
CCDC88C-212ENST00000556767 WARSP23381 471 aaKnown RBP12.26□□□□□ -0.45
CCDC88C-212ENST00000556767 PCSK1P29120 753 aa12.26□□□□□ -0.45
CCDC88C-212ENST00000556767 GNL1P36915 607 aaPredicted RBP12.26□□□□□ -0.45
CCDC88C-212ENST00000556767 MTIF2P46199 727 aaKnown RBP12.26□□□□□ -0.45
CCDC88C-212ENST00000556767 RAP1GAPP47736 663 aa12.26□□□□□ -0.45
CCDC88C-212ENST00000556767 FMO5P49326 533 aa12.26□□□□□ -0.45
CCDC88C-212ENST00000556767 NOP14P78316 857 aaKnown RBP12.26□□□□□ -0.45
CCDC88C-212ENST00000556767 ITIH3Q06033 890 aa12.26□□□□□ -0.45
CCDC88C-212ENST00000556767 TYRO3Q06418 890 aa12.26□□□□□ -0.45
CCDC88C-212ENST00000556767 CETN1Q12798 172 aa12.26□□□□□ -0.45
CCDC88C-212ENST00000556767 GPR17Q13304 367 aa12.26□□□□□ -0.45
CCDC88C-212ENST00000556767 SKOR2Q2VWA4 1001 aaPredicted RBP12.26□□□□□ -0.45
CCDC88C-212ENST00000556767 CBWD6Q4V339 395 aa12.26□□□□□ -0.45
CCDC88C-212ENST00000556767 SLC39A12Q504Y0 691 aa12.26□□□□□ -0.45
CCDC88C-212ENST00000556767 WDR44Q5JSH3 913 aa12.26□□□□□ -0.45
CCDC88C-212ENST00000556767 TJAP1Q5JTD0 557 aa12.26□□□□□ -0.45
CCDC88C-212ENST00000556767 CBWD3Q5JTY5 395 aa12.26□□□□□ -0.45
CCDC88C-212ENST00000556767 CBWD5Q5RIA9 395 aa12.26□□□□□ -0.45
CCDC88C-212ENST00000556767 C11orf57Q6ZUT1 292 aaPredicted RBP12.26□□□□□ -0.45
CCDC88C-212ENST00000556767 SPATA18Q8TC71 538 aa12.26□□□□□ -0.45
CCDC88C-212ENST00000556767 SMG7Q92540 1137 aaKnown RBP12.26□□□□□ -0.45
CCDC88C-212ENST00000556767 SEMA4DQ92854 862 aa12.26□□□□□ -0.45
CCDC88C-212ENST00000556767 RIPOR3Q96MK2 946 aa12.26□□□□□ -0.45
CCDC88C-212ENST00000556767 ACBD6Q9BR61 282 aa12.26□□□□□ -0.45
CCDC88C-212ENST00000556767 ZCWPW1Q9H0M4 648 aa12.26□□□□□ -0.45
CCDC88C-212ENST00000556767 DNAJC25Q9H1X3 360 aa12.26□□□□□ -0.45
CCDC88C-212ENST00000556767 S1PR5Q9H228 398 aa12.26□□□□□ -0.45
CCDC88C-212ENST00000556767 THAP9Q9H5L6 903 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms