RNA–Protein interactions for RNA: ENST00000553544.1

SRP54-203, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 491 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-203ENST00000553544 SMTNP53814 917 aa12.84□□□□□ -0.35
SRP54-203ENST00000553544 EPHB3P54753 998 aa12.84□□□□□ -0.35
SRP54-203ENST00000553544 NCKAP1LP55160 1127 aa12.84□□□□□ -0.35
SRP54-203ENST00000553544 PLD1Q13393 1074 aa12.84□□□□□ -0.35
SRP54-203ENST00000553544 MCM6Q14566 821 aa12.84□□□□□ -0.35
SRP54-203ENST00000553544 ARHGAP29Q52LW3 1261 aa12.84□□□□□ -0.35
SRP54-203ENST00000553544 TXNDC11Q6PKC3 985 aa12.84□□□□□ -0.35
SRP54-203ENST00000553544 RNF19BQ6ZMZ0 732 aa12.84□□□□□ -0.35
SRP54-203ENST00000553544 GPBP1Q86WP2 473 aa12.84□□□□□ -0.35
SRP54-203ENST00000553544 GPIHBP1Q8IV16 184 aa12.84□□□□□ -0.35
SRP54-203ENST00000553544 TTC8Q8TAM2 541 aa12.84□□□□□ -0.35
SRP54-203ENST00000553544 GAB3Q8WWW8 586 aa12.84□□□□□ -0.35
SRP54-203ENST00000553544 RAD54LQ92698 747 aa12.84□□□□□ -0.35
SRP54-203ENST00000553544 DDX12PQ92771 950 aa12.84□□□□□ -0.35
SRP54-203ENST00000553544 RSPRY1Q96DX4 576 aa12.84□□□□□ -0.35
SRP54-203ENST00000553544 EPSTI1Q96J88 318 aa12.84□□□□□ -0.35
SRP54-203ENST00000553544 ZMAT2Q96NC0 199 aaKnown RBP12.84□□□□□ -0.35
SRP54-203ENST00000553544 USP28Q96RU2 1077 aa12.84□□□□□ -0.35
SRP54-203ENST00000553544 REEP2Q9BRK0 252 aa12.84□□□□□ -0.35
SRP54-203ENST00000553544 LSM14BQ9BX40 385 aaKnown RBP12.84□□□□□ -0.35
SRP54-203ENST00000553544 OXCT2Q9BYC2 517 aaPredicted RBP12.84□□□□□ -0.35
SRP54-203ENST00000553544 FOXD4L1Q9NU39 408 aa12.84□□□□□ -0.35
SRP54-203ENST00000553544 C2orf42Q9NWW7 574 aa12.84□□□□□ -0.35
SRP54-203ENST00000553544 GTSE1Q9NYZ3 720 aa12.84□□□□□ -0.35
SRP54-203ENST00000553544 RALGAPA1Q6GYQ0 2036 aa12.84□□□□□ -0.35
SRP54-203ENST00000553544 BAHCC1Q9P281 2608 aa12.84□□□□□ -0.35
SRP54-203ENST00000553544 CCDC163A0A0D9SF12 145 aa12.83□□□□□ -0.36
SRP54-203ENST00000553544 MEFVO15553 781 aaPredicted RBP12.83□□□□□ -0.36
SRP54-203ENST00000553544 ATG13O75143 517 aa12.83□□□□□ -0.36
SRP54-203ENST00000553544 TOM1L1O75674 476 aa12.83□□□□□ -0.36
SRP54-203ENST00000553544 KCNK5O95279 499 aa12.83□□□□□ -0.36
SRP54-203ENST00000553544 RAP1GAPP47736 663 aa12.83□□□□□ -0.36
SRP54-203ENST00000553544 ALDH1A3P47895 512 aa12.83□□□□□ -0.36
SRP54-203ENST00000553544 CCINQ13939 588 aa12.83□□□□□ -0.36
SRP54-203ENST00000553544 SLC39A14Q15043 492 aa12.83□□□□□ -0.36
SRP54-203ENST00000553544 PON2Q15165 354 aa12.83□□□□□ -0.36
SRP54-203ENST00000553544 CCDC6Q16204 474 aa12.83□□□□□ -0.36
SRP54-203ENST00000553544 ZNF568Q3ZCX4 644 aa12.83□□□□□ -0.36
SRP54-203ENST00000553544 MPZL3Q6UWV2 235 aa12.83□□□□□ -0.36
SRP54-203ENST00000553544 ZPBP2Q6X784 338 aa12.83□□□□□ -0.36
SRP54-203ENST00000553544 LARP4BQ92615 738 aaKnown RBP12.83□□□□□ -0.36
SRP54-203ENST00000553544 C18orf25Q96B23 403 aaPredicted RBP12.83□□□□□ -0.36
SRP54-203ENST00000553544 ZBTB45Q96K62 511 aaPredicted RBP12.83□□□□□ -0.36
SRP54-203ENST00000553544 FIZ1Q96SL8 496 aa12.83□□□□□ -0.36
SRP54-203ENST00000553544 LRRC3Q9BY71 257 aa12.83□□□□□ -0.36
SRP54-203ENST00000553544 RXFP3Q9NSD7 469 aa12.83□□□□□ -0.36
SRP54-203ENST00000553544 PCDHB8Q9UN66 801 aa12.83□□□□□ -0.36
SRP54-203ENST00000553544 PCDHGA5Q9Y5G8 931 aa12.83□□□□□ -0.36
SRP54-203ENST00000553544 FRYQ5TBA9 3013 aa12.83□□□□□ -0.36
SRP54-203ENST00000553544 H0YCG3 227 aa12.82□□□□□ -0.36
SRP54-203ENST00000553544 OAZ2O95190 189 aa12.82□□□□□ -0.36
SRP54-203ENST00000553544 EPN2O95208 641 aa12.82□□□□□ -0.36
SRP54-203ENST00000553544 FGF19O95750 216 aa12.82□□□□□ -0.36
SRP54-203ENST00000553544 CCDC192P0DO97 292 aa12.82□□□□□ -0.36
SRP54-203ENST00000553544 SCP2P22307 547 aa12.82□□□□□ -0.36
SRP54-203ENST00000553544 NASPP49321 788 aaPredicted RBP12.82□□□□□ -0.36
SRP54-203ENST00000553544 PLCB2Q00722 1185 aa12.82□□□□□ -0.36
SRP54-203ENST00000553544 YWHAHQ04917 246 aaPredicted RBP12.82□□□□□ -0.36
SRP54-203ENST00000553544 STRN3Q13033 797 aa12.82□□□□□ -0.36
SRP54-203ENST00000553544 DUSP4Q13115 394 aa12.82□□□□□ -0.36
SRP54-203ENST00000553544 DHX8Q14562 1220 aaKnown RBP12.82□□□□□ -0.36
SRP54-203ENST00000553544 WDR44Q5JSH3 913 aa12.82□□□□□ -0.36
SRP54-203ENST00000553544 DNAJB7Q7Z6W7 309 aaPredicted RBP12.82□□□□□ -0.36
SRP54-203ENST00000553544 KBTBD6Q86V97 674 aa12.82□□□□□ -0.36
SRP54-203ENST00000553544 BEST2Q8NFU1 509 aa12.82□□□□□ -0.36
SRP54-203ENST00000553544 ZFYVE19Q96K21 471 aa12.82□□□□□ -0.36
SRP54-203ENST00000553544 ZC3H10Q96K80 434 aaKnown RBP12.82□□□□□ -0.36
SRP54-203ENST00000553544 CLIC6Q96NY7 704 aa12.82□□□□□ -0.36
SRP54-203ENST00000553544 LRRC3BQ96PB8 259 aa12.82□□□□□ -0.36
SRP54-203ENST00000553544 HAPLN2Q9GZV7 340 aa12.82□□□□□ -0.36
SRP54-203ENST00000553544 ATXN3LQ9H3M9 355 aa12.82□□□□□ -0.36
SRP54-203ENST00000553544 VPS45Q9NRW7 570 aa12.82□□□□□ -0.36
SRP54-203ENST00000553544 THG1LQ9NWX6 298 aaKnown RBP12.82□□□□□ -0.36
SRP54-203ENST00000553544 OBP2AQ9NY56 170 aa12.82□□□□□ -0.36
SRP54-203ENST00000553544 CNTN3Q9P232 1028 aa12.82□□□□□ -0.36
SRP54-203ENST00000553544 SLC8A2Q9UPR5 921 aa12.82□□□□□ -0.36
SRP54-203ENST00000553544 ASB3Q9Y575 518 aa12.82□□□□□ -0.36
SRP54-203ENST00000553544 NCANO14594 1321 aa12.82□□□□□ -0.36
SRP54-203ENST00000553544 EXTL3O43909 919 aa12.81□□□□□ -0.36
SRP54-203ENST00000553544 TRAK2O60296 914 aa12.81□□□□□ -0.36
SRP54-203ENST00000553544 AKAP3O75969 853 aa12.81□□□□□ -0.36
SRP54-203ENST00000553544 PIGRP01833 764 aa12.81□□□□□ -0.36
SRP54-203ENST00000553544 HOXC13P31276 330 aa12.81□□□□□ -0.36
SRP54-203ENST00000553544 PXNP49023 591 aaPredicted RBP12.81□□□□□ -0.36
SRP54-203ENST00000553544 CEBPZQ03701 1054 aaKnown RBP12.81□□□□□ -0.36
SRP54-203ENST00000553544 MCL1Q07820 350 aa12.81□□□□□ -0.36
SRP54-203ENST00000553544 GPR17Q13304 367 aa12.81□□□□□ -0.36
SRP54-203ENST00000553544 ITPRIPL2Q3MIP1 535 aa12.81□□□□□ -0.36
SRP54-203ENST00000553544 ARHGAP15Q53QZ3 475 aa12.81□□□□□ -0.36
SRP54-203ENST00000553544 PLA2G2CQ5R387 149 aa12.81□□□□□ -0.36
SRP54-203ENST00000553544 RNF43Q68DV7 783 aa12.81□□□□□ -0.36
SRP54-203ENST00000553544 USP37Q86T82 979 aa12.81□□□□□ -0.36
SRP54-203ENST00000553544 HSCBQ8IWL3 235 aa12.81□□□□□ -0.36
SRP54-203ENST00000553544 LINC00301Q8NCQ3 95 aa12.81□□□□□ -0.36
SRP54-203ENST00000553544 TMEM209Q96SK2 561 aa12.81□□□□□ -0.36
SRP54-203ENST00000553544 PARVGQ9HBI0 331 aa12.81□□□□□ -0.36
SRP54-203ENST00000553544 STK17AQ9UEE5 414 aa12.81□□□□□ -0.36
SRP54-203ENST00000553544 YIPF1Q9Y548 306 aa12.81□□□□□ -0.36
SRP54-203ENST00000553544 OR6C75A6NL08 312 aa12.8□□□□□ -0.36
SRP54-203ENST00000553544 M0QZQ0 153 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms