RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 TNRC6CQ9HCJ0 1690 aaKnown RBP5.12□□□□□ -1.59
LIMA1-214ENST00000552783 H0YIN7 160 aa5.12□□□□□ -1.59
LIMA1-214ENST00000552783 EIF3DO15371 548 aaKnown RBP eCLIP5.12□□□□□ -1.59
LIMA1-214ENST00000552783 GYG2O15488 501 aa5.12□□□□□ -1.59
LIMA1-214ENST00000552783 PRPF4O43172 522 aaKnown RBP eCLIP5.12□□□□□ -1.59
LIMA1-214ENST00000552783 ATP5HO75947 161 aa5.12□□□□□ -1.59
LIMA1-214ENST00000552783 HARSP12081 509 aaKnown RBP5.12□□□□□ -1.59
LIMA1-214ENST00000552783 ALDH1B1P30837 517 aa5.12□□□□□ -1.59
LIMA1-214ENST00000552783 MAPK4P31152 587 aa5.12□□□□□ -1.59
LIMA1-214ENST00000552783 ECE1P42892 770 aa5.12□□□□□ -1.59
LIMA1-214ENST00000552783 CUL3Q13618 768 aa5.12□□□□□ -1.59
LIMA1-214ENST00000552783 TFDP1Q14186 410 aa5.12□□□□□ -1.59
LIMA1-214ENST00000552783 STAT4Q14765 748 aa5.12□□□□□ -1.59
LIMA1-214ENST00000552783 Q4G0T1 1027 aa5.12□□□□□ -1.59
LIMA1-214ENST00000552783 IZUMO2Q6UXV1 221 aa5.12□□□□□ -1.59
LIMA1-214ENST00000552783 RGS9BPQ6ZS82 235 aa5.12□□□□□ -1.59
LIMA1-214ENST00000552783 STXBP4Q6ZWJ1 553 aa5.12□□□□□ -1.59
LIMA1-214ENST00000552783 PASD1Q8IV76 773 aa5.12□□□□□ -1.59
LIMA1-214ENST00000552783 HELQQ8TDG4 1101 aa5.12□□□□□ -1.59
LIMA1-214ENST00000552783 MKL1Q969V6 931 aa5.12□□□□□ -1.59
LIMA1-214ENST00000552783 DNAJC1Q96KC8 554 aaKnown RBP5.12□□□□□ -1.59
LIMA1-214ENST00000552783 GJD4Q96KN9 370 aaPredicted RBP5.12□□□□□ -1.59
LIMA1-214ENST00000552783 KIFC3Q9BVG8 833 aa5.12□□□□□ -1.59
LIMA1-214ENST00000552783 STRA6Q9BX79 667 aa5.12□□□□□ -1.59
LIMA1-214ENST00000552783 GPRC5CQ9NQ84 441 aa5.12□□□□□ -1.59
LIMA1-214ENST00000552783 ACTL7BQ9Y614 415 aa5.12□□□□□ -1.59
LIMA1-214ENST00000552783 RPS6KL1Q9Y6S9 549 aa5.12□□□□□ -1.59
LIMA1-214ENST00000552783 CLUHO75153 1309 aa5.12□□□□□ -1.59
LIMA1-214ENST00000552783 TCRBV7S3A2A0A539 114 aa5.12□□□□□ -1.59
LIMA1-214ENST00000552783 ABLIM1O14639 778 aa5.12□□□□□ -1.59
LIMA1-214ENST00000552783 DLDP09622 509 aaKnown RBP5.12□□□□□ -1.59
LIMA1-214ENST00000552783 KRT5P13647 590 aa5.12□□□□□ -1.59
LIMA1-214ENST00000552783 RXRBP28702 533 aa5.12□□□□□ -1.59
LIMA1-214ENST00000552783 RASSF2P50749 326 aa5.12□□□□□ -1.59
LIMA1-214ENST00000552783 STAT2P52630 851 aa5.12□□□□□ -1.59
LIMA1-214ENST00000552783 AP1B1Q10567 949 aa5.12□□□□□ -1.59
LIMA1-214ENST00000552783 PDIA2Q13087 525 aaKnown RBP5.12□□□□□ -1.59
LIMA1-214ENST00000552783 CCDC142Q17RM4 750 aa5.12□□□□□ -1.59
LIMA1-214ENST00000552783 PABPC1LQ4VXU2 614 aaKnown RBP5.12□□□□□ -1.59
LIMA1-214ENST00000552783 HHATQ5VTY9 493 aa5.12□□□□□ -1.59
LIMA1-214ENST00000552783 ANKRD22Q5VYY1 191 aa5.12□□□□□ -1.59
LIMA1-214ENST00000552783 RAPH1Q70E73 1250 aa5.12□□□□□ -1.59
LIMA1-214ENST00000552783 GSTA5Q7RTV2 222 aa5.12□□□□□ -1.59
LIMA1-214ENST00000552783 ZCCHC9Q8N567 271 aaKnown RBP5.12□□□□□ -1.59
LIMA1-214ENST00000552783 TAS1R2Q8TE23 839 aa5.12□□□□□ -1.59
LIMA1-214ENST00000552783 SHC3Q92529 594 aa5.12□□□□□ -1.59
LIMA1-214ENST00000552783 USP6NLQ92738 828 aa5.12□□□□□ -1.59
LIMA1-214ENST00000552783 SKA1Q96BD8 255 aa5.12□□□□□ -1.59
LIMA1-214ENST00000552783 PANX3Q96QZ0 392 aa5.12□□□□□ -1.59
LIMA1-214ENST00000552783 SMC6Q96SB8 1091 aa5.12□□□□□ -1.59
LIMA1-214ENST00000552783 TTC1Q99614 292 aa5.12□□□□□ -1.59
LIMA1-214ENST00000552783 ZNF184Q99676 751 aaPredicted RBP5.12□□□□□ -1.59
LIMA1-214ENST00000552783 NAP1L4Q99733 375 aaKnown RBP5.12□□□□□ -1.59
LIMA1-214ENST00000552783 ZNF577Q9BSK1 485 aa5.12□□□□□ -1.59
LIMA1-214ENST00000552783 TIPINQ9BVW5 301 aa5.12□□□□□ -1.59
LIMA1-214ENST00000552783 SPATA16Q9BXB7 569 aa5.12□□□□□ -1.59
LIMA1-214ENST00000552783 EBF3Q9H4W6 596 aa5.12□□□□□ -1.59
LIMA1-214ENST00000552783 FBXO28Q9NVF7 368 aa5.12□□□□□ -1.59
LIMA1-214ENST00000552783 USTQ9Y2C2 406 aa5.12□□□□□ -1.59
LIMA1-214ENST00000552783 UMODL1Q5DID0 1318 aa5.12□□□□□ -1.59
LIMA1-214ENST00000552783 PLIN4Q96Q06 1357 aa5.12□□□□□ -1.59
LIMA1-214ENST00000552783 hCG_2014768A0A024R1R8 64 aa5.11□□□□□ -1.59
LIMA1-214ENST00000552783 TESPA1A2RU30 521 aaPredicted RBP5.11□□□□□ -1.59
LIMA1-214ENST00000552783 PIK3CDO00329 1044 aa5.11□□□□□ -1.59
LIMA1-214ENST00000552783 ITGBL1O95965 494 aaPredicted RBP5.11□□□□□ -1.59
LIMA1-214ENST00000552783 GAS8O95995 478 aa5.11□□□□□ -1.59
LIMA1-214ENST00000552783 POLR2MP0CAP2 368 aa5.11□□□□□ -1.59
LIMA1-214ENST00000552783 ARP10275 920 aa5.11□□□□□ -1.59
LIMA1-214ENST00000552783 GZMAP12544 262 aa5.11□□□□□ -1.59
LIMA1-214ENST00000552783 SREBF1P36956 1147 aa5.11□□□□□ -1.59
LIMA1-214ENST00000552783 CETN2P41208 172 aa5.11□□□□□ -1.59
LIMA1-214ENST00000552783 SLC15A2Q16348 729 aa5.11□□□□□ -1.59
LIMA1-214ENST00000552783 TMEM132AQ24JP5 1023 aa5.11□□□□□ -1.59
LIMA1-214ENST00000552783 FNBP1LQ5T0N5 605 aa5.11□□□□□ -1.59
LIMA1-214ENST00000552783 LMBRD2Q68DH5 695 aaPredicted RBP5.11□□□□□ -1.59
LIMA1-214ENST00000552783 CDHR3Q6ZTQ4 885 aa5.11□□□□□ -1.59
LIMA1-214ENST00000552783 ZNF365Q70YC5 407 aa5.11□□□□□ -1.59
LIMA1-214ENST00000552783 LARGE2Q8N3Y3 721 aa5.11□□□□□ -1.59
LIMA1-214ENST00000552783 FAM81AQ8TBF8 368 aa5.11□□□□□ -1.59
LIMA1-214ENST00000552783 MZB1Q8WU39 189 aa5.11□□□□□ -1.59
LIMA1-214ENST00000552783 ITFG2Q969R8 447 aa5.11□□□□□ -1.59
LIMA1-214ENST00000552783 FAM161BQ96MY7 647 aa5.11□□□□□ -1.59
LIMA1-214ENST00000552783 TMEM121Q9BTD3 319 aa5.11□□□□□ -1.59
LIMA1-214ENST00000552783 POLR3CQ9BUI4 534 aaPredicted RBP5.11□□□□□ -1.59
LIMA1-214ENST00000552783 MECRQ9BV79 373 aa5.11□□□□□ -1.59
LIMA1-214ENST00000552783 TMEM120AQ9BXJ8 343 aa5.11□□□□□ -1.59
LIMA1-214ENST00000552783 GLT8D2Q9H1C3 349 aa5.11□□□□□ -1.59
LIMA1-214ENST00000552783 VCXQ9H320 206 aa5.11□□□□□ -1.59
LIMA1-214ENST00000552783 STX18Q9P2W9 335 aaKnown RBP5.11□□□□□ -1.59
LIMA1-214ENST00000552783 HSFX1Q9UBD0 423 aa5.11□□□□□ -1.59
LIMA1-214ENST00000552783 ADAMTSL1Q8N6G6 1762 aa5.11□□□□□ -1.59
LIMA1-214ENST00000552783 C10orf71Q711Q0 1435 aa5.11□□□□□ -1.59
LIMA1-214ENST00000552783 GAKO14976 1311 aa5.11□□□□□ -1.59
LIMA1-214ENST00000552783 DENND3A2RUS2 1198 aa5.11□□□□□ -1.59
LIMA1-214ENST00000552783 H3BRJ5 948 aa5.11□□□□□ -1.59
LIMA1-214ENST00000552783 CCDC22O60826 627 aa5.11□□□□□ -1.59
LIMA1-214ENST00000552783 PSMD10O75832 226 aa5.11□□□□□ -1.59
LIMA1-214ENST00000552783 HAUS5O94927 633 aa5.11□□□□□ -1.59
LIMA1-214ENST00000552783 RARBP10826 455 aa5.11□□□□□ -1.59
LIMA1-214ENST00000552783 MYL2P10916 166 aa5.11□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms