RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 KCNK5O95279 499 aa7.3□□□□□ -1.24
LIMA1-204ENST00000549064 PAPLNO95428 1278 aa7.3□□□□□ -1.24
LIMA1-204ENST00000549064 TOP3BO95985 862 aaKnown RBP7.3□□□□□ -1.24
LIMA1-204ENST00000549064 GSTP1P09211 210 aaKnown RBP7.3□□□□□ -1.24
LIMA1-204ENST00000549064 RPL17P18621 184 aaKnown RBP7.3□□□□□ -1.24
LIMA1-204ENST00000549064 SDSP20132 328 aa7.3□□□□□ -1.24
LIMA1-204ENST00000549064 CDC27P30260 824 aa7.3□□□□□ -1.24
LIMA1-204ENST00000549064 HOXC13P31276 330 aa7.3□□□□□ -1.24
LIMA1-204ENST00000549064 KIF5BP33176 963 aa7.3□□□□□ -1.24
LIMA1-204ENST00000549064 ADH7P40394 386 aa7.3□□□□□ -1.24
LIMA1-204ENST00000549064 GLUD2P49448 558 aa7.3□□□□□ -1.24
LIMA1-204ENST00000549064 DRP2Q13474 957 aa7.3□□□□□ -1.24
LIMA1-204ENST00000549064 FOXR1Q6PIV2 292 aa7.3□□□□□ -1.24
LIMA1-204ENST00000549064 CWC27Q6UX04 472 aaKnown RBP7.3□□□□□ -1.24
LIMA1-204ENST00000549064 C6orf15Q6UXA7 325 aaPredicted RBP7.3□□□□□ -1.24
LIMA1-204ENST00000549064 RSPO2Q6UXX9 243 aaPredicted RBP7.3□□□□□ -1.24
LIMA1-204ENST00000549064 SPATC1Q76KD6 591 aa7.3□□□□□ -1.24
LIMA1-204ENST00000549064 FGF13Q92913 245 aa7.3□□□□□ -1.24
LIMA1-204ENST00000549064 TNFRSF25Q93038 417 aa7.3□□□□□ -1.24
LIMA1-204ENST00000549064 PHF20Q9BVI0 1012 aa7.3□□□□□ -1.24
LIMA1-204ENST00000549064 BRINP2Q9C0B6 783 aa7.3□□□□□ -1.24
LIMA1-204ENST00000549064 CNNM2Q9H8M5 875 aa7.3□□□□□ -1.24
LIMA1-204ENST00000549064 RXFP1Q9HBX9 757 aa7.3□□□□□ -1.24
LIMA1-204ENST00000549064 FAM105AQ9NUU6 356 aa7.3□□□□□ -1.24
LIMA1-204ENST00000549064 KLF15Q9UIH9 416 aa7.3□□□□□ -1.24
LIMA1-204ENST00000549064 CDH7Q9ULB5 785 aa7.3□□□□□ -1.24
LIMA1-204ENST00000549064 FAN1Q9Y2M0 1017 aa7.3□□□□□ -1.24
LIMA1-204ENST00000549064 PDCD11Q14690 1871 aaKnown RBP7.3□□□□□ -1.24
LIMA1-204ENST00000549064 F5P12259 2224 aa7.29□□□□□ -1.24
LIMA1-204ENST00000549064 CHURC1-FNTBB4DL54 471 aa7.29□□□□□ -1.24
LIMA1-204ENST00000549064 NRG2O14511 850 aaPredicted RBP7.29□□□□□ -1.24
LIMA1-204ENST00000549064 PPP1R12AO14974 1030 aaPredicted RBP7.29□□□□□ -1.24
LIMA1-204ENST00000549064 ATE1O95260 518 aa7.29□□□□□ -1.24
LIMA1-204ENST00000549064 PLEKHA8P1O95397 391 aa7.29□□□□□ -1.24
LIMA1-204ENST00000549064 POMCP01189 267 aa7.29□□□□□ -1.24
LIMA1-204ENST00000549064 ALDH2P05091 517 aa7.29□□□□□ -1.24
LIMA1-204ENST00000549064 FNTBP49356 437 aa7.29□□□□□ -1.24
LIMA1-204ENST00000549064 GYS2P54840 703 aa7.29□□□□□ -1.24
LIMA1-204ENST00000549064 PFKPQ01813 784 aa7.29□□□□□ -1.24
LIMA1-204ENST00000549064 SATB1Q01826 763 aa7.29□□□□□ -1.24
LIMA1-204ENST00000549064 GSTM4Q03013 218 aa7.29□□□□□ -1.24
LIMA1-204ENST00000549064 ADCY1Q08828 1119 aa7.29□□□□□ -1.24
LIMA1-204ENST00000549064 AP3B2Q13367 1082 aa7.29□□□□□ -1.24
LIMA1-204ENST00000549064 C2orf27AQ580R0 203 aa7.29□□□□□ -1.24
LIMA1-204ENST00000549064 WIPI1Q5MNZ9 446 aaPredicted RBP7.29□□□□□ -1.24
LIMA1-204ENST00000549064 PSAPL1Q6NUJ1 521 aa7.29□□□□□ -1.24
LIMA1-204ENST00000549064 MIS18BP1Q6P0N0 1132 aa7.29□□□□□ -1.24
LIMA1-204ENST00000549064 MTSS1LQ765P7 747 aa7.29□□□□□ -1.24
LIMA1-204ENST00000549064 KIAA0907Q7Z7F0 614 aaPredicted RBP7.29□□□□□ -1.24
LIMA1-204ENST00000549064 RNF168Q8IYW5 571 aaPredicted RBP7.29□□□□□ -1.24
LIMA1-204ENST00000549064 ITFG1Q8TB96 612 aa7.29□□□□□ -1.24
LIMA1-204ENST00000549064 GPBAR1Q8TDU6 330 aa7.29□□□□□ -1.24
LIMA1-204ENST00000549064 SLC7A3Q8WY07 619 aa7.29□□□□□ -1.24
LIMA1-204ENST00000549064 FAM193BQ96PV7 902 aaPredicted RBP7.29□□□□□ -1.24
LIMA1-204ENST00000549064 NELL2Q99435 816 aa7.29□□□□□ -1.24
LIMA1-204ENST00000549064 SPZ1Q9BXG8 430 aa7.29□□□□□ -1.24
LIMA1-204ENST00000549064 PLA2G2FQ9BZM2 168 aa7.29□□□□□ -1.24
LIMA1-204ENST00000549064 SMOC1Q9H4F8 434 aa7.29□□□□□ -1.24
LIMA1-204ENST00000549064 PLEKHA4Q9H4M7 779 aa7.29□□□□□ -1.24
LIMA1-204ENST00000549064 LY9Q9HBG7 655 aa7.29□□□□□ -1.24
LIMA1-204ENST00000549064 ZDHHC7Q9NXF8 308 aa7.29□□□□□ -1.24
LIMA1-204ENST00000549064 SEC63Q9UGP8 760 aaKnown RBP7.29□□□□□ -1.24
LIMA1-204ENST00000549064 DPP7Q9UHL4 492 aa7.29□□□□□ -1.24
LIMA1-204ENST00000549064 PCDHA4Q9UN74 947 aa7.29□□□□□ -1.24
LIMA1-204ENST00000549064 PIN4Q9Y237 131 aaKnown RBP7.29□□□□□ -1.24
LIMA1-204ENST00000549064 CORINQ9Y5Q5 1042 aa7.29□□□□□ -1.24
LIMA1-204ENST00000549064 ADAMTS20P59510 1910 aa7.29□□□□□ -1.24
LIMA1-204ENST00000549064 TAF4O00268 1085 aa7.28□□□□□ -1.24
LIMA1-204ENST00000549064 CCL16O15467 120 aa7.28□□□□□ -1.24
LIMA1-204ENST00000549064 MAGEB2O15479 319 aa7.28□□□□□ -1.24
LIMA1-204ENST00000549064 DHX15O43143 795 aaKnown RBP7.28□□□□□ -1.24
LIMA1-204ENST00000549064 ECEL1O95672 775 aa7.28□□□□□ -1.24
LIMA1-204ENST00000549064 EFEMP2O95967 443 aa7.28□□□□□ -1.24
LIMA1-204ENST00000549064 TMOD1P28289 359 aa7.28□□□□□ -1.24
LIMA1-204ENST00000549064 OR1G1P47890 313 aa7.28□□□□□ -1.24
LIMA1-204ENST00000549064 LIMK1P53667 647 aa7.28□□□□□ -1.24
LIMA1-204ENST00000549064 DSG1Q02413 1049 aa7.28□□□□□ -1.24
LIMA1-204ENST00000549064 CEP55Q53EZ4 464 aa7.28□□□□□ -1.24
LIMA1-204ENST00000549064 STPG1Q5TH74 334 aa7.28□□□□□ -1.24
LIMA1-204ENST00000549064 ANKRD45Q5TZF3 282 aa7.28□□□□□ -1.24
LIMA1-204ENST00000549064 HEATR6Q6AI08 1181 aaKnown RBP7.28□□□□□ -1.24
LIMA1-204ENST00000549064 MRM1Q6IN84 353 aaKnown RBP7.28□□□□□ -1.24
LIMA1-204ENST00000549064 LILRA6Q6PI73 481 aa7.28□□□□□ -1.24
LIMA1-204ENST00000549064 TXNDC11Q6PKC3 985 aa7.28□□□□□ -1.24
LIMA1-204ENST00000549064 ZNF852Q6ZMS4 543 aa7.28□□□□□ -1.24
LIMA1-204ENST00000549064 SRBD1Q8N5C6 995 aaKnown RBP7.28□□□□□ -1.24
LIMA1-204ENST00000549064 C19orf47Q8N9M1 422 aaKnown RBP7.28□□□□□ -1.24
LIMA1-204ENST00000549064 URGCPQ8TCY9 931 aa7.28□□□□□ -1.24
LIMA1-204ENST00000549064 HDAC7Q8WUI4 952 aa7.28□□□□□ -1.24
LIMA1-204ENST00000549064 ING5Q8WYH8 240 aa7.28□□□□□ -1.24
LIMA1-204ENST00000549064 TMEM175Q9BSA9 504 aa7.28□□□□□ -1.24
LIMA1-204ENST00000549064 DSCC1Q9BVC3 393 aa7.28□□□□□ -1.24
LIMA1-204ENST00000549064 IL25Q9H293 177 aa7.28□□□□□ -1.24
LIMA1-204ENST00000549064 ARRDC1-AS1Q9H2J1 176 aa7.28□□□□□ -1.24
LIMA1-204ENST00000549064 CHST12Q9NRB3 414 aa7.28□□□□□ -1.24
LIMA1-204ENST00000549064 HCFC1R1Q9NWW0 138 aa7.28□□□□□ -1.24
LIMA1-204ENST00000549064 KLHL42Q9P2K6 505 aa7.28□□□□□ -1.24
LIMA1-204ENST00000549064 GABBR1Q9UBS5 961 aa7.28□□□□□ -1.24
LIMA1-204ENST00000549064 PRKAB1Q9Y478 270 aa7.28□□□□□ -1.24
LIMA1-204ENST00000549064 TAF6LQ9Y6J9 622 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms