RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 IGF2BP3O00425 579 aaKnown RBP eCLIP11.76□□□□□ -0.53
CUX1-212ENST00000547394 OPA1O60313 960 aa11.76□□□□□ -0.53
CUX1-212ENST00000547394 MMP8P22894 467 aa11.76□□□□□ -0.53
CUX1-212ENST00000547394 AKAP5P24588 427 aa11.76□□□□□ -0.53
CUX1-212ENST00000547394 ABCD1P33897 745 aa11.76□□□□□ -0.53
CUX1-212ENST00000547394 GNGT1P63211 74 aa11.76□□□□□ -0.53
CUX1-212ENST00000547394 KRT17Q04695 432 aa11.76□□□□□ -0.53
CUX1-212ENST00000547394 ZNF667Q5HYK9 610 aa11.76□□□□□ -0.53
CUX1-212ENST00000547394 HP1BP3Q5SSJ5 553 aaPredicted RBP11.76□□□□□ -0.53
CUX1-212ENST00000547394 DNAJC24Q6P3W2 148 aa11.76□□□□□ -0.53
CUX1-212ENST00000547394 RUFY4Q6ZNE9 571 aa11.76□□□□□ -0.53
CUX1-212ENST00000547394 ILDR2Q71H61 639 aa11.76□□□□□ -0.53
CUX1-212ENST00000547394 SESTD1Q86VW0 696 aa11.76□□□□□ -0.53
CUX1-212ENST00000547394 GLIS1Q8NBF1 620 aa11.76□□□□□ -0.53
CUX1-212ENST00000547394 SHCBP1Q8NEM2 672 aa11.76□□□□□ -0.53
CUX1-212ENST00000547394 RUBCNQ92622 972 aa11.76□□□□□ -0.53
CUX1-212ENST00000547394 ELOVL4Q9GZR5 314 aa11.76□□□□□ -0.53
CUX1-212ENST00000547394 FAM107BQ9H098 131 aa11.76□□□□□ -0.53
CUX1-212ENST00000547394 ZWILCHQ9H900 591 aa11.76□□□□□ -0.53
CUX1-212ENST00000547394 SNTG2Q9NY99 539 aa11.76□□□□□ -0.53
CUX1-212ENST00000547394 CACNG4Q9UBN1 327 aa11.76□□□□□ -0.53
CUX1-212ENST00000547394 ASIC3Q9UHC3 531 aa11.76□□□□□ -0.53
CUX1-212ENST00000547394 TNFSF13BQ9Y275 285 aa11.76□□□□□ -0.53
CUX1-212ENST00000547394 H0YGN5 161 aa11.76□□□□□ -0.53
CUX1-212ENST00000547394 TSPAN1O60635 241 aa11.76□□□□□ -0.53
CUX1-212ENST00000547394 NPTXRO95502 500 aa11.76□□□□□ -0.53
CUX1-212ENST00000547394 ETS1P14921 441 aa11.76□□□□□ -0.53
CUX1-212ENST00000547394 RFC1P35251 1148 aaPredicted RBP11.76□□□□□ -0.53
CUX1-212ENST00000547394 PLEKHH3Q7Z736 793 aa11.76□□□□□ -0.53
CUX1-212ENST00000547394 ERICH1Q86X53 443 aa11.76□□□□□ -0.53
CUX1-212ENST00000547394 C18orf25Q96B23 403 aaPredicted RBP11.76□□□□□ -0.53
CUX1-212ENST00000547394 PIWIL1Q96J94 861 aaKnown RBP11.76□□□□□ -0.53
CUX1-212ENST00000547394 CPXM1Q96SM3 734 aa11.76□□□□□ -0.53
CUX1-212ENST00000547394 RAB17Q9H0T7 212 aa11.76□□□□□ -0.53
CUX1-212ENST00000547394 PCSK1NQ9UHG2 260 aa11.76□□□□□ -0.53
CUX1-212ENST00000547394 NFS1Q9Y697 457 aa11.76□□□□□ -0.53
CUX1-212ENST00000547394 ZSCAN5DPP0CG00 497 aa11.75□□□□□ -0.53
CUX1-212ENST00000547394 CHRNA3P32297 505 aa11.75□□□□□ -0.53
CUX1-212ENST00000547394 RGS7P49802 495 aa11.75□□□□□ -0.53
CUX1-212ENST00000547394 SLC26A2P50443 739 aa11.75□□□□□ -0.53
CUX1-212ENST00000547394 TCEAL1Q15170 157 aa11.75□□□□□ -0.53
CUX1-212ENST00000547394 TAF5Q15542 800 aa11.75□□□□□ -0.53
CUX1-212ENST00000547394 KRT71Q3SY84 523 aa11.75□□□□□ -0.53
CUX1-212ENST00000547394 OLFML2BQ68BL8 750 aa11.75□□□□□ -0.53
CUX1-212ENST00000547394 PLEKHA7Q6IQ23 1121 aa11.75□□□□□ -0.53
CUX1-212ENST00000547394 ZNF677Q86XU0 584 aa11.75□□□□□ -0.53
CUX1-212ENST00000547394 C2orf69Q8N8R5 385 aa11.75□□□□□ -0.53
CUX1-212ENST00000547394 FEZF2Q8TBJ5 459 aa11.75□□□□□ -0.53
CUX1-212ENST00000547394 RAPGEF5Q92565 580 aa11.75□□□□□ -0.53
CUX1-212ENST00000547394 KIF12Q96FN5 646 aa11.75□□□□□ -0.53
CUX1-212ENST00000547394 DDX23Q9BUQ8 820 aaKnown RBP11.75□□□□□ -0.53
CUX1-212ENST00000547394 SYNCQ9H7C4 482 aa11.75□□□□□ -0.53
CUX1-212ENST00000547394 VTA1Q9NP79 307 aa11.75□□□□□ -0.53
CUX1-212ENST00000547394 PRMT7Q9NVM4 692 aaPredicted RBP11.75□□□□□ -0.53
CUX1-212ENST00000547394 MTUS1Q9ULD2 1270 aa11.75□□□□□ -0.53
CUX1-212ENST00000547394 BHMG1C9JSJ3 638 aaPredicted RBP11.75□□□□□ -0.53
CUX1-212ENST00000547394 TULP2O00295 520 aa11.75□□□□□ -0.53
CUX1-212ENST00000547394 ACTN2P35609 894 aa11.75□□□□□ -0.53
CUX1-212ENST00000547394 CHKAP35790 457 aa11.75□□□□□ -0.53
CUX1-212ENST00000547394 RAD23BP54727 409 aa11.75□□□□□ -0.53
CUX1-212ENST00000547394 TNFAIP2Q03169 654 aa11.75□□□□□ -0.53
CUX1-212ENST00000547394 IFFO1Q0D2I5 559 aa11.75□□□□□ -0.53
CUX1-212ENST00000547394 ZNF484Q5JVG2 852 aa11.75□□□□□ -0.53
CUX1-212ENST00000547394 SH3PXD2AQ5TCZ1 1133 aa11.75□□□□□ -0.53
CUX1-212ENST00000547394 MFSD7Q6UXD7 560 aa11.75□□□□□ -0.53
CUX1-212ENST00000547394 LEKR1Q6ZMV7 388 aa11.75□□□□□ -0.53
CUX1-212ENST00000547394 PHF13Q86YI8 300 aaPredicted RBP11.75□□□□□ -0.53
CUX1-212ENST00000547394 HPDLQ96IR7 371 aa11.75□□□□□ -0.53
CUX1-212ENST00000547394 HEXIM2Q96MH2 286 aaKnown RBP11.75□□□□□ -0.53
CUX1-212ENST00000547394 ZMAT2Q96NC0 199 aaKnown RBP11.75□□□□□ -0.53
CUX1-212ENST00000547394 EPB41L4BQ9H329 900 aa11.75□□□□□ -0.53
CUX1-212ENST00000547394 AVENQ9NQS1 362 aaPredicted RBP11.75□□□□□ -0.53
CUX1-212ENST00000547394 FAM114A2Q9NRY5 505 aa11.75□□□□□ -0.53
CUX1-212ENST00000547394 FAM49BQ9NUQ9 324 aa11.75□□□□□ -0.53
CUX1-212ENST00000547394 RSPH14Q9UHP6 348 aa11.75□□□□□ -0.53
CUX1-212ENST00000547394 GJD2Q9UKL4 321 aa11.75□□□□□ -0.53
CUX1-212ENST00000547394 CNTN6Q9UQ52 1028 aa11.75□□□□□ -0.53
CUX1-212ENST00000547394 GOLGA8KD6RF30 607 aa11.74□□□□□ -0.53
CUX1-212ENST00000547394 GAS2O43903 313 aaKnown RBP11.74□□□□□ -0.53
CUX1-212ENST00000547394 B4GALT4O60513 344 aa11.74□□□□□ -0.53
CUX1-212ENST00000547394 PPFIA4O75335 1185 aa11.74□□□□□ -0.53
CUX1-212ENST00000547394 KRT1P04264 644 aa11.74□□□□□ -0.53
CUX1-212ENST00000547394 IGFBP6P24592 240 aaPredicted RBP11.74□□□□□ -0.53
CUX1-212ENST00000547394 GRB14Q14449 540 aa11.74□□□□□ -0.53
CUX1-212ENST00000547394 SLC29A2Q14542 456 aa11.74□□□□□ -0.53
CUX1-212ENST00000547394 CCDC142Q17RM4 750 aa11.74□□□□□ -0.53
CUX1-212ENST00000547394 DUSP28Q4G0W2 176 aa11.74□□□□□ -0.53
CUX1-212ENST00000547394 LRRN4Q8WUT4 740 aa11.74□□□□□ -0.53
CUX1-212ENST00000547394 TMEM40Q8WWA1 233 aa11.74□□□□□ -0.53
CUX1-212ENST00000547394 DNAJB3Q8WWF6 145 aa11.74□□□□□ -0.53
CUX1-212ENST00000547394 JPH2Q9BR39 696 aaPredicted RBP11.74□□□□□ -0.53
CUX1-212ENST00000547394 CAPS2Q9BXY5 557 aa11.74□□□□□ -0.53
CUX1-212ENST00000547394 MAF1Q9H063 256 aa11.74□□□□□ -0.53
CUX1-212ENST00000547394 NXF3Q9H4D5 531 aaKnown RBP11.74□□□□□ -0.53
CUX1-212ENST00000547394 GOLGA2P5Q9HBQ8 144 aa11.74□□□□□ -0.53
CUX1-212ENST00000547394 PARVAQ9NVD7 372 aa11.74□□□□□ -0.53
CUX1-212ENST00000547394 TUBGCP4Q9UGJ1 667 aa11.74□□□□□ -0.53
CUX1-212ENST00000547394 NOVA2Q9UNW9 492 aaKnown RBP11.74□□□□□ -0.53
CUX1-212ENST00000547394 SIP14410 1827 aa11.74□□□□□ -0.53
CUX1-212ENST00000547394 LRRD1A4D1F6 860 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms