RNA–Protein interactions for RNA: ENST00000546304.1

PRKDC-211, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 2

Gene PRKDC, Length 589 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-211ENST00000546304 NOS3P29474 1203 aa6.9□□□□□ -1.3
PRKDC-211ENST00000546304 HOXD13P35453 343 aa6.9□□□□□ -1.3
PRKDC-211ENST00000546304 MATR3P43243 847 aaKnown RBP eCLIP6.9□□□□□ -1.3
PRKDC-211ENST00000546304 MCL1Q07820 350 aa6.9□□□□□ -1.3
PRKDC-211ENST00000546304 STIM1Q13586 685 aa6.9□□□□□ -1.3
PRKDC-211ENST00000546304 SHHQ15465 462 aa6.9□□□□□ -1.3
PRKDC-211ENST00000546304 NFKBIBQ15653 356 aa6.9□□□□□ -1.3
PRKDC-211ENST00000546304 KNOP1Q1ED39 458 aaKnown RBP6.9□□□□□ -1.3
PRKDC-211ENST00000546304 CAVIN1Q6NZI2 390 aaKnown RBP6.9□□□□□ -1.3
PRKDC-211ENST00000546304 RBM43Q6ZSC3 357 aaKnown RBP6.9□□□□□ -1.3
PRKDC-211ENST00000546304 HS2ST1Q7LGA3 356 aa6.9□□□□□ -1.3
PRKDC-211ENST00000546304 ECHDC2Q86YB7 292 aa6.9□□□□□ -1.3
PRKDC-211ENST00000546304 HACE1Q8IYU2 909 aa6.9□□□□□ -1.3
PRKDC-211ENST00000546304 SYCP3Q8IZU3 236 aa6.9□□□□□ -1.3
PRKDC-211ENST00000546304 GUF1Q8N442 669 aaKnown RBP6.9□□□□□ -1.3
PRKDC-211ENST00000546304 TMEM102Q8N9M5 508 aaPredicted RBP6.9□□□□□ -1.3
PRKDC-211ENST00000546304 TRIML1Q8N9V2 468 aa6.9□□□□□ -1.3
PRKDC-211ENST00000546304 RNF169Q8NCN4 708 aa6.9□□□□□ -1.3
PRKDC-211ENST00000546304 GALNT11Q8NCW6 608 aa6.9□□□□□ -1.3
PRKDC-211ENST00000546304 GOLGA5Q8TBA6 731 aa6.9□□□□□ -1.3
PRKDC-211ENST00000546304 MSTO1Q9BUK6 570 aa6.9□□□□□ -1.3
PRKDC-211ENST00000546304 GBP3Q9H0R5 595 aa6.9□□□□□ -1.3
PRKDC-211ENST00000546304 IKZF4Q9H2S9 585 aa6.9□□□□□ -1.3
PRKDC-211ENST00000546304 SEMA6BQ9H3T3 888 aa6.9□□□□□ -1.3
PRKDC-211ENST00000546304 RC3H2Q9HBD1 1191 aaKnown RBP6.9□□□□□ -1.3
PRKDC-211ENST00000546304 PTPRHQ9HD43 1115 aa6.9□□□□□ -1.3
PRKDC-211ENST00000546304 AGPAT3Q9NRZ7 376 aa6.9□□□□□ -1.3
PRKDC-211ENST00000546304 TMEM161AQ9NX61 479 aa6.9□□□□□ -1.3
PRKDC-211ENST00000546304 FOXD3Q9UJU5 478 aaPredicted RBP6.9□□□□□ -1.3
PRKDC-211ENST00000546304 MAPK8IP1Q9UQF2 711 aa6.9□□□□□ -1.3
PRKDC-211ENST00000546304 IPPQ9Y573 584 aa6.9□□□□□ -1.3
PRKDC-211ENST00000546304 PCDHB2Q9Y5E7 798 aa6.9□□□□□ -1.3
PRKDC-211ENST00000546304 EYSQ5T1H1 3165 aa6.9□□□□□ -1.31
PRKDC-211ENST00000546304 ATG2AQ2TAZ0 1938 aa6.89□□□□□ -1.31
PRKDC-211ENST00000546304 A0A0B4J269 797 aa6.89□□□□□ -1.31
PRKDC-211ENST00000546304 A0A1W2PPC1 479 aa6.89□□□□□ -1.31
PRKDC-211ENST00000546304 MEIS3P2A8K0S8 358 aa6.89□□□□□ -1.31
PRKDC-211ENST00000546304 ENPP3O14638 875 aa6.89□□□□□ -1.31
PRKDC-211ENST00000546304 PSMA7O14818 248 aa6.89□□□□□ -1.31
PRKDC-211ENST00000546304 CLDN3O15551 220 aa6.89□□□□□ -1.31
PRKDC-211ENST00000546304 TGFB1I1O43294 461 aa6.89□□□□□ -1.31
PRKDC-211ENST00000546304 FAM189A1O60320 539 aa6.89□□□□□ -1.31
PRKDC-211ENST00000546304 ZNF623O75123 536 aa6.89□□□□□ -1.31
PRKDC-211ENST00000546304 RECQL4O94761 1208 aa6.89□□□□□ -1.31
PRKDC-211ENST00000546304 GJB5O95377 273 aa6.89□□□□□ -1.31
PRKDC-211ENST00000546304 STAG3L1P0CL83 205 aa6.89□□□□□ -1.31
PRKDC-211ENST00000546304 FGFR1P11362 822 aa6.89□□□□□ -1.31
PRKDC-211ENST00000546304 ACPPP15309 386 aa6.89□□□□□ -1.31
PRKDC-211ENST00000546304 EPHA1P21709 976 aa6.89□□□□□ -1.31
PRKDC-211ENST00000546304 BMP6P22004 513 aa6.89□□□□□ -1.31
PRKDC-211ENST00000546304 ITGB7P26010 798 aa6.89□□□□□ -1.31
PRKDC-211ENST00000546304 MLH1P40692 756 aa6.89□□□□□ -1.31
PRKDC-211ENST00000546304 PPP1R2P41236 205 aa6.89□□□□□ -1.31
PRKDC-211ENST00000546304 MORC3Q14149 939 aa6.89□□□□□ -1.31
PRKDC-211ENST00000546304 DPCR1Q3MIW9 517 aa6.89□□□□□ -1.31
PRKDC-211ENST00000546304 COBLL1Q53SF7 1204 aa6.89□□□□□ -1.31
PRKDC-211ENST00000546304 ISM2Q6H9L7 571 aa6.89□□□□□ -1.31
PRKDC-211ENST00000546304 FAM109BQ6ICB4 259 aaPredicted RBP6.89□□□□□ -1.31
PRKDC-211ENST00000546304 FAM117BQ6P1L5 589 aa6.89□□□□□ -1.31
PRKDC-211ENST00000546304 ARMCX5Q6P1M9 558 aa6.89□□□□□ -1.31
PRKDC-211ENST00000546304 Q6ZS46 218 aa6.89□□□□□ -1.31
PRKDC-211ENST00000546304 TMCO2Q7Z6W1 182 aaPredicted RBP6.89□□□□□ -1.31
PRKDC-211ENST00000546304 RTN4RL1Q86UN2 441 aaPredicted RBP6.89□□□□□ -1.31
PRKDC-211ENST00000546304 HERC6Q8IVU3 1022 aa6.89□□□□□ -1.31
PRKDC-211ENST00000546304 KLHL23Q8NBE8 558 aa6.89□□□□□ -1.31
PRKDC-211ENST00000546304 SMG8Q8ND04 991 aaKnown RBP6.89□□□□□ -1.31
PRKDC-211ENST00000546304 ZNF507Q8TCN5 953 aa6.89□□□□□ -1.31
PRKDC-211ENST00000546304 POMGNT1Q8WZA1 660 aa6.89□□□□□ -1.31
PRKDC-211ENST00000546304 LPPQ93052 612 aa6.89□□□□□ -1.31
PRKDC-211ENST00000546304 ZBTB45Q96K62 511 aaPredicted RBP6.89□□□□□ -1.31
PRKDC-211ENST00000546304 CITED4Q96RK1 184 aa6.89□□□□□ -1.31
PRKDC-211ENST00000546304 YME1L1Q96TA2 773 aa6.89□□□□□ -1.31
PRKDC-211ENST00000546304 CBWD1Q9BRT8 395 aa6.89□□□□□ -1.31
PRKDC-211ENST00000546304 TCHPQ9BT92 498 aa6.89□□□□□ -1.31
PRKDC-211ENST00000546304 APOL6Q9BWW8 343 aa6.89□□□□□ -1.31
PRKDC-211ENST00000546304 HAPLN2Q9GZV7 340 aa6.89□□□□□ -1.31
PRKDC-211ENST00000546304 ELAC1Q9H777 363 aaKnown RBP6.89□□□□□ -1.31
PRKDC-211ENST00000546304 AKTIPQ9H8T0 292 aa6.89□□□□□ -1.31
PRKDC-211ENST00000546304 TYW1Q9NV66 732 aaKnown RBP6.89□□□□□ -1.31
PRKDC-211ENST00000546304 CTNND2Q9UQB3 1225 aa6.89□□□□□ -1.31
PRKDC-211ENST00000546304 HES2Q9Y543 173 aa6.89□□□□□ -1.31
PRKDC-211ENST00000546304 STYXL1Q9Y6J8 313 aa6.89□□□□□ -1.31
PRKDC-211ENST00000546304 TSC2P49815 1807 aa6.89□□□□□ -1.31
PRKDC-211ENST00000546304 REV3LO60673 3130 aa6.89□□□□□ -1.31
PRKDC-211ENST00000546304 PLXNA4Q9HCM2 1894 aa6.88□□□□□ -1.31
PRKDC-211ENST00000546304 ANKRD63C9JTQ0 380 aa6.88□□□□□ -1.31
PRKDC-211ENST00000546304 F8W735 103 aaPredicted RBP6.88□□□□□ -1.31
PRKDC-211ENST00000546304 H3BRJ5 948 aa6.88□□□□□ -1.31
PRKDC-211ENST00000546304 FSCN2O14926 492 aa6.88□□□□□ -1.31
PRKDC-211ENST00000546304 KIAA0391O15091 583 aaKnown RBP6.88□□□□□ -1.31
PRKDC-211ENST00000546304 OGTO15294 1046 aa6.88□□□□□ -1.31
PRKDC-211ENST00000546304 NDUFB5O43674 189 aa6.88□□□□□ -1.31
PRKDC-211ENST00000546304 EOMESO95936 686 aa6.88□□□□□ -1.31
PRKDC-211ENST00000546304 CXCL8P10145 99 aa6.88□□□□□ -1.31
PRKDC-211ENST00000546304 ITGA4P13612 1032 aa6.88□□□□□ -1.31
PRKDC-211ENST00000546304 GARTP22102 1010 aa6.88□□□□□ -1.31
PRKDC-211ENST00000546304 ADSSP30520 456 aa6.88□□□□□ -1.31
PRKDC-211ENST00000546304 CD68P34810 354 aaPredicted RBP6.88□□□□□ -1.31
PRKDC-211ENST00000546304 PRCPP42785 496 aa6.88□□□□□ -1.31
PRKDC-211ENST00000546304 GATMP50440 423 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms