RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 SEPT10Q9P0V9 454 aa8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 LIMD1Q9UGP4 676 aa8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 ARMCX3Q9UH62 379 aaPredicted RBP8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 FBXL5Q9UKA1 691 aa8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 EFR3BQ9Y2G0 817 aa8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 C5orf60A6NFR6 353 aa8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 LUC7L3O95232 432 aaKnown RBP8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 ATG7O95352 703 aa8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 TROVE2P10155 538 aaKnown RBP eCLIP8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 RBP3P10745 1247 aa8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 NQO1P15559 274 aaKnown RBP8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 CCND1P24385 295 aa8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 HSPA9P38646 679 aaKnown RBP8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 NCKAP1LP55160 1127 aa8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 ITGA7Q13683 1181 aa8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 INAQ16352 499 aa8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 PPP1R15BQ5SWA1 713 aa8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 TRPM8Q7Z2W7 1104 aa8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 ZNF572Q7Z3I7 529 aaPredicted RBP8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 OSTM1Q86WC4 334 aa8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 SLC9A9Q8IVB4 645 aa8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 CCDC60Q8IWA6 550 aaPredicted RBP8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 LINC00469Q8N7U9 141 aa8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 FAM133AQ8N9E0 248 aa8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 TNIP2Q8NFZ5 429 aa8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 KLHL29Q96CT2 875 aa8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 OPTNQ96CV9 577 aa8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 MAELQ96JY0 434 aaKnown RBP8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 SNX27Q96L92 541 aa8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 NOX5Q96PH1 765 aa8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 XPO6Q96QU8 1125 aaKnown RBP8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 UCN2Q96RP3 112 aa8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 LSM14BQ9BX40 385 aaKnown RBP8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 SIX2Q9NPC8 291 aa8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 GPRC5CQ9NQ84 441 aa8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 MRGBPQ9NV56 204 aa8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 SLC9A2Q9UBY0 812 aa8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 FBXO40Q9UH90 709 aa8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 MYCP01106 439 aaPredicted RBP8.45□□□□□ -1.06
PDLIM5-221ENST00000542407 AFPP02771 609 aaKnown RBP8.45□□□□□ -1.06
PDLIM5-221ENST00000542407 SSTR3P32745 418 aaPredicted RBP8.45□□□□□ -1.06
PDLIM5-221ENST00000542407 S100A5P33763 92 aa8.45□□□□□ -1.06
PDLIM5-221ENST00000542407 PMS2P54278 862 aa8.45□□□□□ -1.06
PDLIM5-221ENST00000542407 ACTR2P61160 394 aa8.45□□□□□ -1.06
PDLIM5-221ENST00000542407 GTF2BQ00403 316 aa8.45□□□□□ -1.06
PDLIM5-221ENST00000542407 RIPK1Q13546 671 aa8.45□□□□□ -1.06
PDLIM5-221ENST00000542407 SUZ12Q15022 739 aaKnown RBP8.45□□□□□ -1.06
PDLIM5-221ENST00000542407 UAP1Q16222 522 aaPredicted RBP8.45□□□□□ -1.06
PDLIM5-221ENST00000542407 TTC39BQ5VTQ0 682 aaPredicted RBP8.45□□□□□ -1.06
PDLIM5-221ENST00000542407 NT5DC4Q86YG4 428 aa8.45□□□□□ -1.06
PDLIM5-221ENST00000542407 SYN2Q92777 582 aaPredicted RBP8.45□□□□□ -1.06
PDLIM5-221ENST00000542407 NAF1Q96HR8 494 aaKnown RBP8.45□□□□□ -1.06
PDLIM5-221ENST00000542407 MKNK1Q9BUB5 465 aa8.45□□□□□ -1.06
PDLIM5-221ENST00000542407 CCDC113Q9H0I3 377 aa8.45□□□□□ -1.06
PDLIM5-221ENST00000542407 ECT2Q9H8V3 914 aa8.45□□□□□ -1.06
PDLIM5-221ENST00000542407 RBPJLQ9UBG7 517 aa8.45□□□□□ -1.06
PDLIM5-221ENST00000542407 HESX1Q9UBX0 185 aa8.45□□□□□ -1.06
PDLIM5-221ENST00000542407 IQCA1LA6NCM1 817 aa8.45□□□□□ -1.06
PDLIM5-221ENST00000542407 CFAP73A6NFT4 308 aa8.45□□□□□ -1.06
PDLIM5-221ENST00000542407 K7ENM7 598 aa8.45□□□□□ -1.06
PDLIM5-221ENST00000542407 TTI1O43156 1089 aa8.45□□□□□ -1.06
PDLIM5-221ENST00000542407 MAP3K13O43283 966 aa8.45□□□□□ -1.06
PDLIM5-221ENST00000542407 UBOX5O94941 541 aa8.45□□□□□ -1.06
PDLIM5-221ENST00000542407 TBX4P57082 545 aa8.45□□□□□ -1.06
PDLIM5-221ENST00000542407 ERVK-9P63128 1117 aa8.45□□□□□ -1.06
PDLIM5-221ENST00000542407 ATP11AP98196 1134 aa8.45□□□□□ -1.06
PDLIM5-221ENST00000542407 GFPT1Q06210 699 aaPredicted RBP8.45□□□□□ -1.06
PDLIM5-221ENST00000542407 STXBP2Q15833 593 aa8.45□□□□□ -1.06
PDLIM5-221ENST00000542407 BOLA3Q53S33 107 aa8.45□□□□□ -1.06
PDLIM5-221ENST00000542407 TDRD12Q587J7 1177 aaKnown RBP8.45□□□□□ -1.06
PDLIM5-221ENST00000542407 KLHDC7AQ5VTJ3 777 aa8.45□□□□□ -1.06
PDLIM5-221ENST00000542407 TMEM53Q6P2H8 277 aa8.45□□□□□ -1.06
PDLIM5-221ENST00000542407 RRAGAQ7L523 313 aa8.45□□□□□ -1.06
PDLIM5-221ENST00000542407 C12orf56Q8IXR9 622 aa8.45□□□□□ -1.06
PDLIM5-221ENST00000542407 LRRC34Q8IZ02 419 aa8.45□□□□□ -1.06
PDLIM5-221ENST00000542407 ANKRD35Q8N283 1001 aa8.45□□□□□ -1.06
PDLIM5-221ENST00000542407 SLC17A8Q8NDX2 589 aa8.45□□□□□ -1.06
PDLIM5-221ENST00000542407 BSNDQ8WZ55 320 aa8.45□□□□□ -1.06
PDLIM5-221ENST00000542407 TMUB1Q9BVT8 246 aa8.45□□□□□ -1.06
PDLIM5-221ENST00000542407 LRRC4CQ9HCJ2 640 aa8.45□□□□□ -1.06
PDLIM5-221ENST00000542407 XPO7Q9UIA9 1087 aaKnown RBP8.45□□□□□ -1.06
PDLIM5-221ENST00000542407 SLC12A4Q9UP95 1085 aa8.45□□□□□ -1.06
PDLIM5-221ENST00000542407 R3HDM2Q9Y2K5 976 aaKnown RBP8.45□□□□□ -1.06
PDLIM5-221ENST00000542407 C2CD2Q9Y426 696 aa8.45□□□□□ -1.06
PDLIM5-221ENST00000542407 SIP14410 1827 aa8.45□□□□□ -1.06
PDLIM5-221ENST00000542407 SYNGAP1Q96PV0 1343 aa8.45□□□□□ -1.06
PDLIM5-221ENST00000542407 IGKV6D-21A0A0A0MT36 114 aa8.44□□□□□ -1.06
PDLIM5-221ENST00000542407 TRIM43BA6NCK2 446 aa8.44□□□□□ -1.06
PDLIM5-221ENST00000542407 A6NHS1 94 aa8.44□□□□□ -1.06
PDLIM5-221ENST00000542407 TISP43B9A030 160 aa8.44□□□□□ -1.06
PDLIM5-221ENST00000542407 PALMO75781 387 aa8.44□□□□□ -1.06
PDLIM5-221ENST00000542407 PENKP01210 267 aaPredicted RBP8.44□□□□□ -1.06
PDLIM5-221ENST00000542407 PSAPP07602 524 aa8.44□□□□□ -1.06
PDLIM5-221ENST00000542407 SUPT20HL2P0C7V6 817 aa8.44□□□□□ -1.06
PDLIM5-221ENST00000542407 POTEJP0CG39 1038 aa8.44□□□□□ -1.06
PDLIM5-221ENST00000542407 XRCC5P13010 732 aaKnown RBP8.44□□□□□ -1.06
PDLIM5-221ENST00000542407 CHN1P15882 459 aa8.44□□□□□ -1.06
PDLIM5-221ENST00000542407 PON1P27169 355 aa8.44□□□□□ -1.06
PDLIM5-221ENST00000542407 TUBP50607 506 aa8.44□□□□□ -1.06
PDLIM5-221ENST00000542407 TNNC1P63316 161 aa8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms