RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 PCDHA3Q9Y5H8 950 aa7.11□□□□□ -1.27
USP28-207ENST00000538475 CD2APQ9Y5K6 639 aa7.11□□□□□ -1.27
USP28-207ENST00000538475 SCN7AQ01118 1682 aa7.11□□□□□ -1.27
USP28-207ENST00000538475 ARFGEF1Q9Y6D6 1849 aa7.11□□□□□ -1.27
USP28-207ENST00000538475 KDM3AQ9Y4C1 1321 aa7.1□□□□□ -1.27
USP28-207ENST00000538475 ANKRD62A6NC57 917 aa7.1□□□□□ -1.27
USP28-207ENST00000538475 ERVV-2B6SEH9 535 aa7.1□□□□□ -1.27
USP28-207ENST00000538475 TRAF5O00463 557 aa7.1□□□□□ -1.27
USP28-207ENST00000538475 DDX3XO00571 662 aaKnown RBP eCLIP7.1□□□□□ -1.27
USP28-207ENST00000538475 SLC16A3O15427 465 aaKnown RBP7.1□□□□□ -1.27
USP28-207ENST00000538475 EDF1O60869 148 aaKnown RBP7.1□□□□□ -1.27
USP28-207ENST00000538475 ADAM23O75077 832 aa7.1□□□□□ -1.27
USP28-207ENST00000538475 E2F6O75461 281 aa7.1□□□□□ -1.27
USP28-207ENST00000538475 PLEKHA8P1O95397 391 aa7.1□□□□□ -1.27
USP28-207ENST00000538475 TGDSO95455 350 aa7.1□□□□□ -1.27
USP28-207ENST00000538475 GCP02774 474 aa7.1□□□□□ -1.27
USP28-207ENST00000538475 ASLP04424 464 aa7.1□□□□□ -1.27
USP28-207ENST00000538475 LYNP07948 512 aa7.1□□□□□ -1.27
USP28-207ENST00000538475 FURINP09958 794 aa7.1□□□□□ -1.27
USP28-207ENST00000538475 FAM163BP0C2L3 166 aa7.1□□□□□ -1.27
USP28-207ENST00000538475 TROVE2P10155 538 aaKnown RBP eCLIP7.1□□□□□ -1.27
USP28-207ENST00000538475 FCER1AP12319 257 aa7.1□□□□□ -1.27
USP28-207ENST00000538475 ITGA4P13612 1032 aa7.1□□□□□ -1.27
USP28-207ENST00000538475 VCAM1P19320 739 aa7.1□□□□□ -1.27
USP28-207ENST00000538475 RPL13P26373 211 aaKnown RBP7.1□□□□□ -1.27
USP28-207ENST00000538475 CRABP2P29373 138 aa7.1□□□□□ -1.27
USP28-207ENST00000538475 STAT1P42224 750 aa7.1□□□□□ -1.27
USP28-207ENST00000538475 IFNAR2P48551 515 aa7.1□□□□□ -1.27
USP28-207ENST00000538475 SERPINB4P48594 390 aa7.1□□□□□ -1.27
USP28-207ENST00000538475 JAM2P57087 298 aa7.1□□□□□ -1.27
USP28-207ENST00000538475 ZNF211Q13398 564 aaPredicted RBP7.1□□□□□ -1.27
USP28-207ENST00000538475 CYLC2Q14093 348 aaPredicted RBP7.1□□□□□ -1.27
USP28-207ENST00000538475 DOC2BQ14184 412 aa7.1□□□□□ -1.27
USP28-207ENST00000538475 GRM2Q14416 872 aa7.1□□□□□ -1.27
USP28-207ENST00000538475 RRP1BQ14684 758 aaKnown RBP7.1□□□□□ -1.27
USP28-207ENST00000538475 R3HDM1Q15032 1099 aaKnown RBP7.1□□□□□ -1.27
USP28-207ENST00000538475 NONOQ15233 471 aaKnown RBP eCLIP7.1□□□□□ -1.27
USP28-207ENST00000538475 TBCCQ15814 346 aa7.1□□□□□ -1.27
USP28-207ENST00000538475 NFIL3Q16649 462 aa7.1□□□□□ -1.27
USP28-207ENST00000538475 PDK4Q16654 411 aa7.1□□□□□ -1.27
USP28-207ENST00000538475 TRMT5Q32P41 509 aaKnown RBP7.1□□□□□ -1.27
USP28-207ENST00000538475 Q4G0T1 1027 aa7.1□□□□□ -1.27
USP28-207ENST00000538475 SBK1Q52WX2 424 aa7.1□□□□□ -1.27
USP28-207ENST00000538475 HYIQ5T013 277 aa7.1□□□□□ -1.27
USP28-207ENST00000538475 SEL1L2Q5TEA6 688 aa7.1□□□□□ -1.27
USP28-207ENST00000538475 BORAQ6PGQ7 559 aa7.1□□□□□ -1.27
USP28-207ENST00000538475 HS2ST1Q7LGA3 356 aa7.1□□□□□ -1.27
USP28-207ENST00000538475 ZNF571Q7Z3V5 609 aaPredicted RBP7.1□□□□□ -1.27
USP28-207ENST00000538475 NET1Q7Z628 596 aaPredicted RBP7.1□□□□□ -1.27
USP28-207ENST00000538475 CCDC65Q8IXS2 484 aa7.1□□□□□ -1.27
USP28-207ENST00000538475 IL22RA1Q8N6P7 574 aa7.1□□□□□ -1.27
USP28-207ENST00000538475 MAGEB6Q8N7X4 407 aa7.1□□□□□ -1.27
USP28-207ENST00000538475 ZBTB8BQ8NAP8 495 aaPredicted RBP7.1□□□□□ -1.27
USP28-207ENST00000538475 RAD54LQ92698 747 aa7.1□□□□□ -1.27
USP28-207ENST00000538475 DGCR14Q96DF8 476 aaKnown RBP7.1□□□□□ -1.27
USP28-207ENST00000538475 ERP27Q96DN0 273 aa7.1□□□□□ -1.27
USP28-207ENST00000538475 CDK5RAP3Q96JB5 506 aa7.1□□□□□ -1.27
USP28-207ENST00000538475 NT5C3AQ9H0P0 336 aa7.1□□□□□ -1.27
USP28-207ENST00000538475 DHX36Q9H2U1 1008 aaKnown RBP7.1□□□□□ -1.27
USP28-207ENST00000538475 LRRC19Q9H756 370 aa7.1□□□□□ -1.27
USP28-207ENST00000538475 PCDHA6Q9UN73 950 aa7.1□□□□□ -1.27
USP28-207ENST00000538475 POLIQ9UNA4 740 aa7.1□□□□□ -1.27
USP28-207ENST00000538475 CHKBQ9Y259 395 aa7.1□□□□□ -1.27
USP28-207ENST00000538475 DDX52Q9Y2R4 599 aaKnown RBP eCLIP7.1□□□□□ -1.27
USP28-207ENST00000538475 SH3GLB1Q9Y371 365 aa7.1□□□□□ -1.27
USP28-207ENST00000538475 PCDHA8Q9Y5H6 950 aa7.1□□□□□ -1.27
USP28-207ENST00000538475 TACC3Q9Y6A5 838 aa7.1□□□□□ -1.27
USP28-207ENST00000538475 KCPQ6ZWJ8 1503 aa7.1□□□□□ -1.27
USP28-207ENST00000538475 TNS2Q63HR2 1409 aa7.1□□□□□ -1.27
USP28-207ENST00000538475 NHSL1Q5SYE7 1610 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 ZNF536O15090 1300 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 FAM205AQ6ZU69 1335 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 TMEM221A6NGB7 291 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 CYP27B1O15528 508 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 SORBS3O60504 671 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 PFDN1O60925 122 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 PRDM1O75626 825 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 ASMTLO95671 621 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 ITGA2BP08514 1039 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 VIL1P09327 827 aaKnown RBP7.09□□□□□ -1.27
USP28-207ENST00000538475 T-ENOLP0DO92 83 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 UCHL3P15374 230 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 CES1P23141 567 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 LTKP29376 864 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 CDC25CP30307 473 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 COILP38432 576 aaPredicted RBP7.09□□□□□ -1.27
USP28-207ENST00000538475 RPL21P46778 160 aaKnown RBP7.09□□□□□ -1.27
USP28-207ENST00000538475 TUBP50607 506 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 CABP4P57796 275 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 RNASE9P60153 205 aaKnown RBP7.09□□□□□ -1.27
USP28-207ENST00000538475 AP2B1P63010 937 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 NRG1Q02297 640 aaPredicted RBP7.09□□□□□ -1.27
USP28-207ENST00000538475 DSG1Q02413 1049 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 MGAT5Q09328 741 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 SLC39A6Q13433 755 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 GRM4Q14833 912 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 TXNRD1Q16881 649 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 TMEM119Q4V9L6 283 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 FAM26FQ5R3K3 315 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 COL13A1Q5TAT6 717 aaPredicted RBP7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms