RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 B2RBV5 119 aa11.12□□□□□ -0.63
CLIP1-209ENST00000537178 PRR29P0C7W0 189 aa11.12□□□□□ -0.63
CLIP1-209ENST00000537178 PLA2G4AP47712 749 aa11.12□□□□□ -0.63
CLIP1-209ENST00000537178 PSMD7P51665 324 aa11.12□□□□□ -0.63
CLIP1-209ENST00000537178 CCDC144BQ3MJ40 725 aa11.12□□□□□ -0.63
CLIP1-209ENST00000537178 KDELC2Q7Z4H8 507 aa11.12□□□□□ -0.63
CLIP1-209ENST00000537178 C9orf72Q96LT7 481 aa11.12□□□□□ -0.63
CLIP1-209ENST00000537178 ROPN1BQ9BZX4 212 aaPredicted RBP11.12□□□□□ -0.63
CLIP1-209ENST00000537178 VPS33BQ9H267 617 aa11.12□□□□□ -0.63
CLIP1-209ENST00000537178 ROPN1Q9HAT0 212 aaPredicted RBP11.12□□□□□ -0.63
CLIP1-209ENST00000537178 CD209Q9NNX6 404 aa11.12□□□□□ -0.63
CLIP1-209ENST00000537178 USE1Q9NZ43 259 aa11.12□□□□□ -0.63
CLIP1-209ENST00000537178 PIM2Q9P1W9 311 aa11.12□□□□□ -0.63
CLIP1-209ENST00000537178 MTSS1O43312 755 aa11.12□□□□□ -0.63
CLIP1-209ENST00000537178 SERPINB3P29508 390 aa11.12□□□□□ -0.63
CLIP1-209ENST00000537178 GRIK1P39086 918 aa11.12□□□□□ -0.63
CLIP1-209ENST00000537178 RAB14P61106 215 aa11.12□□□□□ -0.63
CLIP1-209ENST00000537178 MRPS35P82673 323 aaKnown RBP11.12□□□□□ -0.63
CLIP1-209ENST00000537178 CACNB2Q08289 660 aaPredicted RBP11.12□□□□□ -0.63
CLIP1-209ENST00000537178 ZNF772Q68DY9 489 aaPredicted RBP11.12□□□□□ -0.63
CLIP1-209ENST00000537178 TRAF7Q6Q0C0 670 aa11.12□□□□□ -0.63
CLIP1-209ENST00000537178 MMP19Q99542 508 aa11.12□□□□□ -0.63
CLIP1-209ENST00000537178 LY9Q9HBG7 655 aa11.12□□□□□ -0.63
CLIP1-209ENST00000537178 CD274Q9NZQ7 290 aa11.12□□□□□ -0.63
CLIP1-209ENST00000537178 AGAP1Q9UPQ3 857 aa11.12□□□□□ -0.63
CLIP1-209ENST00000537178 DGAT1O75907 488 aa11.11□□□□□ -0.63
CLIP1-209ENST00000537178 ERFP50548 548 aa11.11□□□□□ -0.63
CLIP1-209ENST00000537178 EIF2B5Q13144 721 aaKnown RBP11.11□□□□□ -0.63
CLIP1-209ENST00000537178 PTRHD1Q6GMV3 140 aaKnown RBP11.11□□□□□ -0.63
CLIP1-209ENST00000537178 C4orf22Q6V702 233 aa11.11□□□□□ -0.63
CLIP1-209ENST00000537178 CYB5R4Q7L1T6 521 aa11.11□□□□□ -0.63
CLIP1-209ENST00000537178 APOBEC3FQ8IUX4 373 aaKnown RBP11.11□□□□□ -0.63
CLIP1-209ENST00000537178 MB21D2Q8IYB1 491 aaPredicted RBP11.11□□□□□ -0.63
CLIP1-209ENST00000537178 RIBC1Q8N443 379 aaPredicted RBP11.11□□□□□ -0.63
CLIP1-209ENST00000537178 PABPC5Q96DU9 382 aaKnown RBP11.11□□□□□ -0.63
CLIP1-209ENST00000537178 BBS2Q9BXC9 721 aa11.11□□□□□ -0.63
CLIP1-209ENST00000537178 MARCOQ9UEW3 520 aaPredicted RBP11.11□□□□□ -0.63
CLIP1-209ENST00000537178 MAFGO15525 162 aa11.11□□□□□ -0.63
CLIP1-209ENST00000537178 TDP2O95551 362 aa11.11□□□□□ -0.63
CLIP1-209ENST00000537178 ALBP02768 609 aa11.11□□□□□ -0.63
CLIP1-209ENST00000537178 RGS2P41220 211 aa11.11□□□□□ -0.63
CLIP1-209ENST00000537178 HSPA13P48723 471 aa11.11□□□□□ -0.63
CLIP1-209ENST00000537178 STAT5BP51692 787 aa11.11□□□□□ -0.63
CLIP1-209ENST00000537178 NCALDP61601 193 aa11.11□□□□□ -0.63
CLIP1-209ENST00000537178 TBL3Q12788 808 aaKnown RBP11.11□□□□□ -0.63
CLIP1-209ENST00000537178 PDK1Q15118 436 aa11.11□□□□□ -0.63
CLIP1-209ENST00000537178 MDH1BQ5I0G3 518 aa11.11□□□□□ -0.63
CLIP1-209ENST00000537178 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.11□□□□□ -0.63
CLIP1-209ENST00000537178 CYFIP1Q7L576 1253 aa11.11□□□□□ -0.63
CLIP1-209ENST00000537178 C4orf33Q8N1A6 199 aa11.11□□□□□ -0.63
CLIP1-209ENST00000537178 ZNF668Q96K58 619 aaPredicted RBP11.11□□□□□ -0.63
CLIP1-209ENST00000537178 FRMD8Q9BZ67 464 aaPredicted RBP11.11□□□□□ -0.63
CLIP1-209ENST00000537178 PCMTD2Q9NV79 361 aa11.11□□□□□ -0.63
CLIP1-209ENST00000537178 APEX2Q9UBZ4 518 aa11.11□□□□□ -0.63
CLIP1-209ENST00000537178 SRP68Q9UHB9 627 aaKnown RBP11.11□□□□□ -0.63
CLIP1-209ENST00000537178 TAF6LQ9Y6J9 622 aa11.11□□□□□ -0.63
CLIP1-209ENST00000537178 PRAMEF22A3QJZ6 481 aa11.11□□□□□ -0.63
CLIP1-209ENST00000537178 EIF3HO15372 352 aaKnown RBP eCLIP11.11□□□□□ -0.63
CLIP1-209ENST00000537178 POLBP06746 335 aa11.11□□□□□ -0.63
CLIP1-209ENST00000537178 KCNJ6P48051 423 aa11.11□□□□□ -0.63
CLIP1-209ENST00000537178 PPP3CCP48454 512 aa11.11□□□□□ -0.63
CLIP1-209ENST00000537178 PTK6Q13882 451 aa11.11□□□□□ -0.63
CLIP1-209ENST00000537178 TRIM71Q2Q1W2 868 aaKnown RBP11.11□□□□□ -0.63
CLIP1-209ENST00000537178 XKR3Q5GH77 459 aa11.11□□□□□ -0.63
CLIP1-209ENST00000537178 NEDD1Q8NHV4 660 aa11.11□□□□□ -0.63
CLIP1-209ENST00000537178 XPO7Q9UIA9 1087 aaKnown RBP11.11□□□□□ -0.63
CLIP1-209ENST00000537178 RFX7Q2KHR2 1363 aa11.11□□□□□ -0.63
CLIP1-209ENST00000537178 SCN11AQ9UI33 1791 aa11.11□□□□□ -0.63
CLIP1-209ENST00000537178 C21orf2O43822 256 aa11.11□□□□□ -0.63
CLIP1-209ENST00000537178 RPS6KA4O75676 772 aa11.11□□□□□ -0.63
CLIP1-209ENST00000537178 WEE2P0C1S8 567 aa11.11□□□□□ -0.63
CLIP1-209ENST00000537178 GALCP54803 685 aa11.11□□□□□ -0.63
CLIP1-209ENST00000537178 NCKAP1LP55160 1127 aa11.11□□□□□ -0.63
CLIP1-209ENST00000537178 NUP107P57740 925 aa11.11□□□□□ -0.63
CLIP1-209ENST00000537178 CCDC15Q0P6D6 951 aa11.11□□□□□ -0.63
CLIP1-209ENST00000537178 PTK7Q13308 1070 aa11.11□□□□□ -0.63
CLIP1-209ENST00000537178 DDX53Q86TM3 631 aaKnown RBP11.11□□□□□ -0.63
CLIP1-209ENST00000537178 KAZALD1Q96I82 304 aa11.11□□□□□ -0.63
CLIP1-209ENST00000537178 BRD8Q9H0E9 1235 aa11.11□□□□□ -0.63
CLIP1-209ENST00000537178 MTIF3Q9H2K0 278 aaKnown RBP11.11□□□□□ -0.63
CLIP1-209ENST00000537178 IMPAD1Q9NX62 359 aa11.11□□□□□ -0.63
CLIP1-209ENST00000537178 SNX9Q9Y5X1 595 aa11.11□□□□□ -0.63
CLIP1-209ENST00000537178 C4AP0C0L4 1744 aa11.1□□□□□ -0.63
CLIP1-209ENST00000537178 C4BP0C0L5 1744 aa11.1□□□□□ -0.63
CLIP1-209ENST00000537178 TRPM8Q7Z2W7 1104 aa11.1□□□□□ -0.63
CLIP1-209ENST00000537178 SRLQ86TD4 932 aa11.1□□□□□ -0.63
CLIP1-209ENST00000537178 DHX40Q8IX18 779 aaKnown RBP11.1□□□□□ -0.63
CLIP1-209ENST00000537178 ADGRF4Q8IZF3 695 aa11.1□□□□□ -0.63
CLIP1-209ENST00000537178 GALNT4Q8N4A0 578 aa11.1□□□□□ -0.63
CLIP1-209ENST00000537178 CCSER1Q9C0I3 900 aa11.1□□□□□ -0.63
CLIP1-209ENST00000537178 APPL1Q9UKG1 709 aa11.1□□□□□ -0.63
CLIP1-209ENST00000537178 MROH7-TTC4A0A0A0MT08 1334 aa11.1□□□□□ -0.63
CLIP1-209ENST00000537178 TJP1Q07157 1748 aa11.1□□□□□ -0.63
CLIP1-209ENST00000537178 PP2D1A8MPX8 630 aa11.1□□□□□ -0.63
CLIP1-209ENST00000537178 SUPT3HB4E1H0 165 aa11.1□□□□□ -0.63
CLIP1-209ENST00000537178 PRKCQQ04759 706 aa11.1□□□□□ -0.63
CLIP1-209ENST00000537178 SNX17Q15036 470 aa11.1□□□□□ -0.63
CLIP1-209ENST00000537178 SGSM1Q2NKQ1 1148 aa11.1□□□□□ -0.63
CLIP1-209ENST00000537178 SLC44A5Q8NCS7 719 aa11.1□□□□□ -0.63
CLIP1-209ENST00000537178 RSPH1Q8WYR4 309 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms