RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	GPR150	Q8NGU9	434 aa		3.55	□□□□□ -1.84
CD44-238	ENST00000534296	SLC35A4	Q96G79	324 aa		3.55	□□□□□ -1.84
CD44-238	ENST00000534296	AIFM3	Q96NN9	605 aa		3.55	□□□□□ -1.84
CD44-238	ENST00000534296	DMRTA2	Q96SC8	542 aa		3.55	□□□□□ -1.84
CD44-238	ENST00000534296	GTPBP4	Q9BZE4	634 aa	Known RBP	3.55	□□□□□ -1.84
CD44-238	ENST00000534296	TPSD1	Q9BZJ3	242 aa		3.55	□□□□□ -1.84
CD44-238	ENST00000534296	TINAGL1	Q9GZM7	467 aa	Predicted RBP	3.55	□□□□□ -1.84
CD44-238	ENST00000534296	GPR35	Q9HC97	309 aa		3.55	□□□□□ -1.84
CD44-238	ENST00000534296	SLC17A6	Q9P2U8	582 aa		3.55	□□□□□ -1.84
CD44-238	ENST00000534296	SLC45A2	Q9UMX9	530 aa		3.55	□□□□□ -1.84
CD44-238	ENST00000534296	RAD54B	Q9Y620	910 aa		3.55	□□□□□ -1.84
CD44-238	ENST00000534296	SPATA31A6	Q5VVP1	1343 aa		3.54	□□□□□ -1.84
CD44-238	ENST00000534296	MSANTD3-TMEFF1	A0A0A6YYJ0	341 aa		3.54	□□□□□ -1.84
CD44-238	ENST00000534296		M0QYG6	137 aa		3.54	□□□□□ -1.84
CD44-238	ENST00000534296	MYO1C	O00159	1063 aa		3.54	□□□□□ -1.84
CD44-238	ENST00000534296	PROM1	O43490	865 aa		3.54	□□□□□ -1.84
CD44-238	ENST00000534296	SUN1	O94901	812 aa		3.54	□□□□□ -1.84
CD44-238	ENST00000534296	ABLIM3	O94929	683 aa		3.54	□□□□□ -1.84
CD44-238	ENST00000534296	C1R	P00736	705 aa		3.54	□□□□□ -1.84
CD44-238	ENST00000534296	TYRP1	P17643	537 aa		3.54	□□□□□ -1.84
CD44-238	ENST00000534296	CD38	P28907	300 aa		3.54	□□□□□ -1.84
CD44-238	ENST00000534296	GTF2H3	Q13889	308 aa		3.54	□□□□□ -1.84
CD44-238	ENST00000534296	FAM153C	Q494X1	144 aa		3.54	□□□□□ -1.84
CD44-238	ENST00000534296	PLAC9	Q5JTB6	97 aa		3.54	□□□□□ -1.84
CD44-238	ENST00000534296	ATAT1	Q5SQI0	421 aa		3.54	□□□□□ -1.84
CD44-238	ENST00000534296	AKNAD1	Q5T1N1	836 aa		3.54	□□□□□ -1.84
CD44-238	ENST00000534296	FAM160B1	Q5W0V3	765 aa		3.54	□□□□□ -1.84
CD44-238	ENST00000534296	SFRP4	Q6FHJ7	346 aa	Predicted RBP	3.54	□□□□□ -1.84
CD44-238	ENST00000534296	VWA1	Q6PCB0	445 aa		3.54	□□□□□ -1.84
CD44-238	ENST00000534296	SLC30A10	Q6XR72	485 aa		3.54	□□□□□ -1.84
CD44-238	ENST00000534296	DAAM2	Q86T65	1068 aa		3.54	□□□□□ -1.84
CD44-238	ENST00000534296	FAM90A1	Q86YD7	464 aa		3.54	□□□□□ -1.84
CD44-238	ENST00000534296	DENND1C	Q8IV53	801 aa		3.54	□□□□□ -1.84
CD44-238	ENST00000534296	JPH3	Q8WXH2	748 aa	Predicted RBP	3.54	□□□□□ -1.84
CD44-238	ENST00000534296	HPS3	Q969F9	1004 aa		3.54	□□□□□ -1.84
CD44-238	ENST00000534296	OSBPL9	Q96SU4	736 aa		3.54	□□□□□ -1.84
CD44-238	ENST00000534296	ALG8	Q9BVK2	526 aa		3.54	□□□□□ -1.84
CD44-238	ENST00000534296	SPATA5L1	Q9BVQ7	753 aa		3.54	□□□□□ -1.84
CD44-238	ENST00000534296	C1orf43	Q9BWL3	253 aa		3.54	□□□□□ -1.84
CD44-238	ENST00000534296	MRPL46	Q9H2W6	279 aa	Known RBP	3.54	□□□□□ -1.84
CD44-238	ENST00000534296	PTGFRN	Q9P2B2	879 aa		3.54	□□□□□ -1.84
CD44-238	ENST00000534296	CTTNBP2NL	Q9P2B4	639 aa		3.54	□□□□□ -1.84
CD44-238	ENST00000534296	CCDC78	A2IDD5	438 aa		3.53	□□□□□ -1.84
CD44-238	ENST00000534296	GCOM1	H8Y6P7	765 aa	Predicted RBP	3.53	□□□□□ -1.84
CD44-238	ENST00000534296	AP1G1	O43747	822 aa		3.53	□□□□□ -1.84
CD44-238	ENST00000534296	NXPH3	O95157	252 aa		3.53	□□□□□ -1.84
CD44-238	ENST00000534296	CD6	P30203	668 aa		3.53	□□□□□ -1.84
CD44-238	ENST00000534296	PHKA1	P46020	1223 aa		3.53	□□□□□ -1.84
CD44-238	ENST00000534296	CACNA2D1	P54289	1103 aa		3.53	□□□□□ -1.84
CD44-238	ENST00000534296	MC2R	Q01718	297 aa		3.53	□□□□□ -1.84
CD44-238	ENST00000534296	COL10A1	Q03692	680 aa		3.53	□□□□□ -1.84
CD44-238	ENST00000534296	MCL1	Q07820	350 aa		3.53	□□□□□ -1.84
CD44-238	ENST00000534296	PTPRR	Q15256	657 aa		3.53	□□□□□ -1.84
CD44-238	ENST00000534296	KHDC1L	Q5JSQ8	128 aa		3.53	□□□□□ -1.84
CD44-238	ENST00000534296	EMC10	Q5UCC4	262 aa		3.53	□□□□□ -1.84
CD44-238	ENST00000534296	DPY19L2P1	Q6NXN4	242 aa		3.53	□□□□□ -1.84
CD44-238	ENST00000534296	RD3	Q7Z3Z2	195 aa		3.53	□□□□□ -1.84
CD44-238	ENST00000534296	USP37	Q86T82	979 aa		3.53	□□□□□ -1.84
CD44-238	ENST00000534296	PRIMA1	Q86XR5	153 aa		3.53	□□□□□ -1.84
CD44-238	ENST00000534296	FAM9A	Q8IZU1	332 aa	Predicted RBP	3.53	□□□□□ -1.84
CD44-238	ENST00000534296		Q8NA96	180 aa		3.53	□□□□□ -1.84
CD44-238	ENST00000534296	PCSK9	Q8NBP7	692 aa	Known RBP	3.53	□□□□□ -1.84
CD44-238	ENST00000534296	PSD4	Q8NDX1	1056 aa		3.53	□□□□□ -1.84
CD44-238	ENST00000534296	SIMC1	Q8NDZ2	872 aa		3.53	□□□□□ -1.84
CD44-238	ENST00000534296	NSUN7	Q8NE18	718 aa	Known RBP	3.53	□□□□□ -1.84
CD44-238	ENST00000534296	SLC30A5	Q8TAD4	765 aa		3.53	□□□□□ -1.84
CD44-238	ENST00000534296	MYCBPAP	Q8TBZ2	947 aa		3.53	□□□□□ -1.84
CD44-238	ENST00000534296	POC1B	Q8TC44	478 aa		3.53	□□□□□ -1.84
CD44-238	ENST00000534296	NELL2	Q99435	816 aa		3.53	□□□□□ -1.84
CD44-238	ENST00000534296	RSAD1	Q9HA92	442 aa		3.53	□□□□□ -1.84
CD44-238	ENST00000534296	PIH1D1	Q9NWS0	290 aa	Known RBP	3.53	□□□□□ -1.84
CD44-238	ENST00000534296	ZIM2	Q9NZV7	527 aa		3.53	□□□□□ -1.84
CD44-238	ENST00000534296	PAXBP1	Q9Y5B6	917 aa		3.53	□□□□□ -1.84
CD44-238	ENST00000534296	PCDHA1	Q9Y5I3	950 aa		3.53	□□□□□ -1.84
CD44-238	ENST00000534296		E9PLN8	166 aa		3.52	□□□□□ -1.85
CD44-238	ENST00000534296		H3BML4	177 aa		3.52	□□□□□ -1.85
CD44-238	ENST00000534296	AKAP10	O43572	662 aa		3.52	□□□□□ -1.85
CD44-238	ENST00000534296	VPS4B	O75351	444 aa		3.52	□□□□□ -1.85
CD44-238	ENST00000534296	RFPL1	O75677	317 aa		3.52	□□□□□ -1.85
CD44-238	ENST00000534296	URI1	O94763	535 aa	Predicted RBP	3.52	□□□□□ -1.85
CD44-238	ENST00000534296	ZFPL1	O95159	310 aa		3.52	□□□□□ -1.85
CD44-238	ENST00000534296	KIF20A	O95235	890 aa		3.52	□□□□□ -1.85
CD44-238	ENST00000534296	MATN4	O95460	622 aa		3.52	□□□□□ -1.85
CD44-238	ENST00000534296	TTLL1	O95922	423 aa		3.52	□□□□□ -1.85
CD44-238	ENST00000534296	CHRM2	P08172	466 aa		3.52	□□□□□ -1.85
CD44-238	ENST00000534296	ATXN1L	P0C7T5	689 aa	Known RBP	3.52	□□□□□ -1.85
CD44-238	ENST00000534296	XRCC6	P12956	609 aa	Known RBP eCLIP	3.52	□□□□□ -1.85
CD44-238	ENST00000534296	PPP3CB	P16298	524 aa		3.52	□□□□□ -1.85
CD44-238	ENST00000534296	GPD1	P21695	349 aa		3.52	□□□□□ -1.85
CD44-238	ENST00000534296	PLA2G5	P39877	138 aa		3.52	□□□□□ -1.85
CD44-238	ENST00000534296	GRIA3	P42263	894 aa		3.52	□□□□□ -1.85
CD44-238	ENST00000534296	RARRES1	P49788	294 aa		3.52	□□□□□ -1.85
CD44-238	ENST00000534296	RAB27A	P51159	221 aa		3.52	□□□□□ -1.85
CD44-238	ENST00000534296	SOX10	P56693	466 aa		3.52	□□□□□ -1.85
CD44-238	ENST00000534296	SOX8	P57073	446 aa		3.52	□□□□□ -1.85
CD44-238	ENST00000534296	SIM1	P81133	766 aa	Predicted RBP	3.52	□□□□□ -1.85
CD44-238	ENST00000534296	FGL2	Q14314	439 aa		3.52	□□□□□ -1.85
CD44-238	ENST00000534296	PLS1	Q14651	629 aa		3.52	□□□□□ -1.85
CD44-238	ENST00000534296	SLC44A4	Q53GD3	710 aa		3.52	□□□□□ -1.85
CD44-238	ENST00000534296	CXorf57	Q6NSI4	855 aa	Known RBP	3.52	□□□□□ -1.85

Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms