RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 TMPRSS15P98073 1019 aa5.09□□□□□ -1.59
CD44-235ENST00000532339 TOR2AQ5JU69 321 aa5.09□□□□□ -1.59
CD44-235ENST00000532339 ABHD17BQ5VST6 288 aa5.09□□□□□ -1.59
CD44-235ENST00000532339 AGAP9Q5VTM2 703 aa5.09□□□□□ -1.59
CD44-235ENST00000532339 RHOT2Q8IXI1 618 aa5.09□□□□□ -1.59
CD44-235ENST00000532339 CMTR2Q8IYT2 770 aaKnown RBP5.09□□□□□ -1.59
CD44-235ENST00000532339 CAVIN3Q969G5 261 aa5.09□□□□□ -1.59
CD44-235ENST00000532339 PHACTR3Q96KR7 559 aa5.09□□□□□ -1.59
CD44-235ENST00000532339 NEU1Q99519 415 aa5.09□□□□□ -1.59
CD44-235ENST00000532339 ADI1Q9BV57 179 aa5.09□□□□□ -1.59
CD44-235ENST00000532339 FAM126AQ9BYI3 521 aaPredicted RBP5.09□□□□□ -1.59
CD44-235ENST00000532339 REXO4Q9GZR2 422 aaKnown RBP5.09□□□□□ -1.59
CD44-235ENST00000532339 LANCL2Q9NS86 450 aa5.09□□□□□ -1.59
CD44-235ENST00000532339 THSD7BQ9C0I4 1608 aa5.08□□□□□ -1.6
CD44-235ENST00000532339 UNC119BA6NIH7 251 aa5.08□□□□□ -1.6
CD44-235ENST00000532339 ZAR1LA6NP61 321 aa5.08□□□□□ -1.6
CD44-235ENST00000532339 EXOC5O00471 708 aa5.08□□□□□ -1.6
CD44-235ENST00000532339 SLC5A3P53794 718 aa5.08□□□□□ -1.6
CD44-235ENST00000532339 RAP2BP61225 183 aa5.08□□□□□ -1.6
CD44-235ENST00000532339 SRSF2Q01130 221 aaKnown RBP5.08□□□□□ -1.6
CD44-235ENST00000532339 RESTQ13127 1097 aa5.08□□□□□ -1.6
CD44-235ENST00000532339 TP53BP2Q13625 1128 aa5.08□□□□□ -1.6
CD44-235ENST00000532339 SPDYE7PQ495Y7 208 aa5.08□□□□□ -1.6
CD44-235ENST00000532339 OLFML1Q6UWY5 402 aa5.08□□□□□ -1.6
CD44-235ENST00000532339 MED25Q71SY5 747 aa5.08□□□□□ -1.6
CD44-235ENST00000532339 PQLC1Q8N2U9 271 aa5.08□□□□□ -1.6
CD44-235ENST00000532339 OR56A1Q8NGH5 318 aa5.08□□□□□ -1.6
CD44-235ENST00000532339 STAG1Q8WVM7 1258 aa5.08□□□□□ -1.6
CD44-235ENST00000532339 LINC00476Q8WZB0 136 aa5.08□□□□□ -1.6
CD44-235ENST00000532339 FAM122AQ96E09 287 aa5.08□□□□□ -1.6
CD44-235ENST00000532339 AHCYL2Q96HN2 611 aaKnown RBP5.08□□□□□ -1.6
CD44-235ENST00000532339 ADAM2Q99965 735 aa5.08□□□□□ -1.6
CD44-235ENST00000532339 MRI1Q9BV20 369 aa5.08□□□□□ -1.6
CD44-235ENST00000532339 SENP6Q9GZR1 1112 aaPredicted RBP5.08□□□□□ -1.6
CD44-235ENST00000532339 VTA1Q9NP79 307 aa5.08□□□□□ -1.6
CD44-235ENST00000532339 C14orf119Q9NWQ9 140 aa5.08□□□□□ -1.6
CD44-235ENST00000532339 SYBUQ9NX95 663 aa5.08□□□□□ -1.6
CD44-235ENST00000532339 MAP3K2Q9Y2U5 619 aa5.08□□□□□ -1.6
CD44-235ENST00000532339 COL18A1P39060 1754 aa5.07□□□□□ -1.6
CD44-235ENST00000532339 LTBP1Q14766 1721 aa5.07□□□□□ -1.6
CD44-235ENST00000532339 CDKL5O76039 1030 aa5.07□□□□□ -1.6
CD44-235ENST00000532339 ENDOD1O94919 500 aa5.07□□□□□ -1.6
CD44-235ENST00000532339 SPDEFO95238 335 aa5.07□□□□□ -1.6
CD44-235ENST00000532339 EYA4O95677 639 aa5.07□□□□□ -1.6
CD44-235ENST00000532339 CFIP05156 583 aa5.07□□□□□ -1.6
CD44-235ENST00000532339 RAP2AP10114 183 aa5.07□□□□□ -1.6
CD44-235ENST00000532339 ATP5JP18859 108 aa5.07□□□□□ -1.6
CD44-235ENST00000532339 MALLQ13021 153 aa5.07□□□□□ -1.6
CD44-235ENST00000532339 STRIP1Q5VSL9 837 aa5.07□□□□□ -1.6
CD44-235ENST00000532339 AFMIDQ63HM1 303 aa5.07□□□□□ -1.6
CD44-235ENST00000532339 TOM1L2Q6ZVM7 507 aa5.07□□□□□ -1.6
CD44-235ENST00000532339 PRIMA1Q86XR5 153 aa5.07□□□□□ -1.6
CD44-235ENST00000532339 FBXO18Q8NFZ0 1043 aa5.07□□□□□ -1.6
CD44-235ENST00000532339 FUBP3Q96I24 572 aaKnown RBP eCLIP5.07□□□□□ -1.6
CD44-235ENST00000532339 KLHL11Q9NVR0 708 aa5.07□□□□□ -1.6
CD44-235ENST00000532339 DNAJC28Q9NX36 388 aa5.07□□□□□ -1.6
CD44-235ENST00000532339 DDX56Q9NY93 547 aaKnown RBP5.07□□□□□ -1.6
CD44-235ENST00000532339 PIK3C2AO00443 1686 aa5.07□□□□□ -1.6
CD44-235ENST00000532339 MKI67P46013 3256 aaKnown RBP5.07□□□□□ -1.6
CD44-235ENST00000532339 TRIOBPQ9H2D6 2365 aa5.07□□□□□ -1.6
CD44-235ENST00000532339 ANKARQ7Z5J8 1434 aa5.06□□□□□ -1.6
CD44-235ENST00000532339 ANKRD30AQ9BXX3 1397 aa5.06□□□□□ -1.6
CD44-235ENST00000532339 PLEKHH1Q9ULM0 1364 aa5.06□□□□□ -1.6
CD44-235ENST00000532339 A0A0G2JLW4 131 aa5.06□□□□□ -1.6
CD44-235ENST00000532339 TEX33O43247 280 aa5.06□□□□□ -1.6
CD44-235ENST00000532339 FOSP01100 380 aaPredicted RBP5.06□□□□□ -1.6
CD44-235ENST00000532339 POMCP01189 267 aa5.06□□□□□ -1.6
CD44-235ENST00000532339 CNGA1P29973 690 aa5.06□□□□□ -1.6
CD44-235ENST00000532339 GUCY1A2P33402 732 aa5.06□□□□□ -1.6
CD44-235ENST00000532339 MAP2K2P36507 400 aa5.06□□□□□ -1.6
CD44-235ENST00000532339 MCAMP43121 646 aa5.06□□□□□ -1.6
CD44-235ENST00000532339 GPR3P46089 330 aa5.06□□□□□ -1.6
CD44-235ENST00000532339 SEC24CP53992 1094 aa5.06□□□□□ -1.6
CD44-235ENST00000532339 PPP3CAQ08209 521 aa5.06□□□□□ -1.6
CD44-235ENST00000532339 NOMO1Q15155 1222 aa5.06□□□□□ -1.6
CD44-235ENST00000532339 ERCC6LQ2NKX8 1250 aa5.06□□□□□ -1.6
CD44-235ENST00000532339 TSHZ3Q63HK5 1081 aa5.06□□□□□ -1.6
CD44-235ENST00000532339 OTUD7BQ6GQQ9 843 aa5.06□□□□□ -1.6
CD44-235ENST00000532339 SPATS2Q86XZ4 545 aaKnown RBP5.06□□□□□ -1.6
CD44-235ENST00000532339 MAPKAPK5Q8IW41 473 aa5.06□□□□□ -1.6
CD44-235ENST00000532339 WDR66Q8TBY9 1149 aa5.06□□□□□ -1.6
CD44-235ENST00000532339 CASKIN2Q8WXE0 1202 aa5.06□□□□□ -1.6
CD44-235ENST00000532339 HOXB13Q92826 284 aaPredicted RBP5.06□□□□□ -1.6
CD44-235ENST00000532339 RNPEPQ9H4A4 650 aa5.06□□□□□ -1.6
CD44-235ENST00000532339 SYNPO2LQ9H987 977 aa5.06□□□□□ -1.6
CD44-235ENST00000532339 DMRT3Q9NQL9 472 aa5.06□□□□□ -1.6
CD44-235ENST00000532339 TMEM140Q9NV12 185 aa5.06□□□□□ -1.6
CD44-235ENST00000532339 FAM30AQ9NZY2 134 aa5.06□□□□□ -1.6
CD44-235ENST00000532339 KLHL42Q9P2K6 505 aa5.06□□□□□ -1.6
CD44-235ENST00000532339 NOX1Q9Y5S8 564 aa5.06□□□□□ -1.6
CD44-235ENST00000532339 EPN1Q9Y6I3 576 aaPredicted RBP5.06□□□□□ -1.6
CD44-235ENST00000532339 SPTBN5Q9NRC6 3674 aaKnown RBP5.06□□□□□ -1.6
CD44-235ENST00000532339 BTAF1O14981 1849 aa5.06□□□□□ -1.6
CD44-235ENST00000532339 KDM6AO15550 1401 aaPredicted RBP5.06□□□□□ -1.6
CD44-235ENST00000532339 ABCC11Q96J66 1382 aa5.05□□□□□ -1.6
CD44-235ENST00000532339 FAM171A2A8MVW0 826 aa5.05□□□□□ -1.6
CD44-235ENST00000532339 KIAA0355O15063 1070 aa5.05□□□□□ -1.6
CD44-235ENST00000532339 GPR39O43194 453 aa5.05□□□□□ -1.6
CD44-235ENST00000532339 PRKD3O94806 890 aa5.05□□□□□ -1.6
CD44-235ENST00000532339 EGR2P11161 476 aaPredicted RBP5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms