RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 VNN1O95497 513 aa15.3■□□□□ 0.04
NUP54-216ENST00000514901 ASS1P00966 412 aaKnown RBP15.3■□□□□ 0.04
NUP54-216ENST00000514901 HLA-DRAP01903 254 aa15.3■□□□□ 0.04
NUP54-216ENST00000514901 ATF2P15336 505 aa15.3■□□□□ 0.04
NUP54-216ENST00000514901 ELF1P32519 619 aa15.3■□□□□ 0.04
NUP54-216ENST00000514901 PIK3CAP42336 1068 aa15.3■□□□□ 0.04
NUP54-216ENST00000514901 RBM10P98175 930 aaKnown RBP15.3■□□□□ 0.04
NUP54-216ENST00000514901 MYL7Q01449 175 aa15.3■□□□□ 0.04
NUP54-216ENST00000514901 ROR1Q01973 937 aa15.3■□□□□ 0.04
NUP54-216ENST00000514901 CETN1Q12798 172 aa15.3■□□□□ 0.04
NUP54-216ENST00000514901 SMAD4Q13485 552 aaKnown RBP15.3■□□□□ 0.04
NUP54-216ENST00000514901 SOWAHAQ2M3V2 549 aa15.3■□□□□ 0.04
NUP54-216ENST00000514901 LIN9Q5TKA1 542 aa15.3■□□□□ 0.04
NUP54-216ENST00000514901 CES5AQ6NT32 575 aa15.3■□□□□ 0.04
NUP54-216ENST00000514901 SYCE2Q6PIF2 218 aa15.3■□□□□ 0.04
NUP54-216ENST00000514901 CCDC149Q6ZUS6 474 aa15.3■□□□□ 0.04
NUP54-216ENST00000514901 FAM114A1Q8IWE2 563 aa15.3■□□□□ 0.04
NUP54-216ENST00000514901 PHF6Q8IWS0 365 aaKnown RBP eCLIP15.3■□□□□ 0.04
NUP54-216ENST00000514901 ADGRF2Q8IZF7 708 aa15.3■□□□□ 0.04
NUP54-216ENST00000514901 SMRP1Q8NCR6 262 aa15.3■□□□□ 0.04
NUP54-216ENST00000514901 FBXL13Q8NEE6 735 aa15.3■□□□□ 0.04
NUP54-216ENST00000514901 CMASQ8NFW8 434 aaPredicted RBP15.3■□□□□ 0.04
NUP54-216ENST00000514901 ENOX1Q8TC92 643 aaKnown RBP15.3■□□□□ 0.04
NUP54-216ENST00000514901 SLC35C1Q96A29 364 aa15.3■□□□□ 0.04
NUP54-216ENST00000514901 FAXDC2Q96IV6 333 aa15.3■□□□□ 0.04
NUP54-216ENST00000514901 MED15Q96RN5 788 aa15.3■□□□□ 0.04
NUP54-216ENST00000514901 ACBD6Q9BR61 282 aa15.3■□□□□ 0.04
NUP54-216ENST00000514901 THAP9Q9H5L6 903 aa15.3■□□□□ 0.04
NUP54-216ENST00000514901 SFXN1Q9H9B4 322 aa15.3■□□□□ 0.04
NUP54-216ENST00000514901 ZDHHC7Q9NXF8 308 aa15.3■□□□□ 0.04
NUP54-216ENST00000514901 AFF4Q9UHB7 1163 aaKnown RBP15.3■□□□□ 0.04
NUP54-216ENST00000514901 FBXW11Q9UKB1 542 aa15.3■□□□□ 0.04
NUP54-216ENST00000514901 L1RE1Q9UN81 338 aa15.3■□□□□ 0.04
NUP54-216ENST00000514901 GABRDO14764 452 aa15.29■□□□□ 0.04
NUP54-216ENST00000514901 P4HA2O15460 535 aa15.29■□□□□ 0.04
NUP54-216ENST00000514901 PAPLNO95428 1278 aa15.29■□□□□ 0.04
NUP54-216ENST00000514901 CPB1P15086 417 aa15.29■□□□□ 0.04
NUP54-216ENST00000514901 WARSP23381 471 aaKnown RBP15.29■□□□□ 0.04
NUP54-216ENST00000514901 PCSK1P29120 753 aa15.29■□□□□ 0.04
NUP54-216ENST00000514901 ARPP19P56211 112 aa15.29■□□□□ 0.04
NUP54-216ENST00000514901 TSPY1Q01534 308 aa15.29■□□□□ 0.04
NUP54-216ENST00000514901 TFF2Q03403 129 aa15.29■□□□□ 0.04
NUP54-216ENST00000514901 GPR17Q13304 367 aa15.29■□□□□ 0.04
NUP54-216ENST00000514901 TRIM59Q8IWR1 403 aa15.29■□□□□ 0.04
NUP54-216ENST00000514901 DCP1BQ8IZD4 617 aaKnown RBP15.29■□□□□ 0.04
NUP54-216ENST00000514901 TAS1R2Q8TE23 839 aa15.29■□□□□ 0.04
NUP54-216ENST00000514901 ASB2Q96Q27 587 aa15.29■□□□□ 0.04
NUP54-216ENST00000514901 RHOBTB2Q9BYZ6 727 aa15.29■□□□□ 0.04
NUP54-216ENST00000514901 NAT10Q9H0A0 1025 aaKnown RBP15.29■□□□□ 0.04
NUP54-216ENST00000514901 S1PR5Q9H228 398 aa15.29■□□□□ 0.04
NUP54-216ENST00000514901 ADAM7Q9H2U9 754 aa15.29■□□□□ 0.04
NUP54-216ENST00000514901 MMRN2Q9H8L6 949 aa15.29■□□□□ 0.04
NUP54-216ENST00000514901 RAB20Q9NX57 234 aa15.29■□□□□ 0.04
NUP54-216ENST00000514901 NXF1Q9UBU9 619 aaKnown RBP15.29■□□□□ 0.04
NUP54-216ENST00000514901 COQ4Q9Y3A0 265 aa15.29■□□□□ 0.04
NUP54-216ENST00000514901 UTP18Q9Y5J1 556 aaKnown RBP eCLIP15.29■□□□□ 0.04
NUP54-216ENST00000514901 WDR27A2RRH5 827 aa15.28■□□□□ 0.04
NUP54-216ENST00000514901 ZMYND10O75800 440 aa15.28■□□□□ 0.04
NUP54-216ENST00000514901 CLSTN1O94985 981 aa15.28■□□□□ 0.04
NUP54-216ENST00000514901 HNRNPA1P09651 372 aaKnown RBP eCLIP15.28■□□□□ 0.04
NUP54-216ENST00000514901 SPATA31D3P0C874 917 aa15.28■□□□□ 0.04
NUP54-216ENST00000514901 PRKCSHP14314 528 aaPredicted RBP15.28■□□□□ 0.04
NUP54-216ENST00000514901 HOXA9P31269 272 aa15.28■□□□□ 0.04
NUP54-216ENST00000514901 GNL1P36915 607 aaPredicted RBP15.28■□□□□ 0.04
NUP54-216ENST00000514901 FMO5P49326 533 aa15.28■□□□□ 0.04
NUP54-216ENST00000514901 TYRO3Q06418 890 aa15.28■□□□□ 0.04
NUP54-216ENST00000514901 WDR44Q5JSH3 913 aa15.28■□□□□ 0.04
NUP54-216ENST00000514901 ATAT1Q5SQI0 421 aa15.28■□□□□ 0.04
NUP54-216ENST00000514901 PTCRAQ6ISU1 281 aaPredicted RBP15.28■□□□□ 0.04
NUP54-216ENST00000514901 SPATA31D4Q6ZUB0 917 aa15.28■□□□□ 0.04
NUP54-216ENST00000514901 TCEAL8Q8IYN2 117 aa15.28■□□□□ 0.04
NUP54-216ENST00000514901 GADD45GIP1Q8TAE8 222 aaPredicted RBP15.28■□□□□ 0.04
NUP54-216ENST00000514901 C2orf15Q8WU43 125 aaKnown RBP15.28■□□□□ 0.04
NUP54-216ENST00000514901 NECTIN4Q96NY8 510 aa15.28■□□□□ 0.04
NUP54-216ENST00000514901 RTP3Q9BQQ7 232 aa15.28■□□□□ 0.04
NUP54-216ENST00000514901 ZCWPW1Q9H0M4 648 aa15.28■□□□□ 0.04
NUP54-216ENST00000514901 SNX25Q9H3E2 840 aa15.28■□□□□ 0.04
NUP54-216ENST00000514901 DDX43Q9NXZ2 648 aaKnown RBP15.28■□□□□ 0.04
NUP54-216ENST00000514901 HSFX1Q9UBD0 423 aa15.28■□□□□ 0.04
NUP54-216ENST00000514901 MAGEC2Q9UBF1 373 aaPredicted RBP15.28■□□□□ 0.04
NUP54-216ENST00000514901 XIRP2A4UGR9 3374 aa15.27■□□□□ 0.04
NUP54-216ENST00000514901 GRXCR2A6NFK2 248 aa15.27■□□□□ 0.04
NUP54-216ENST00000514901 PRRG1O14668 218 aa15.27■□□□□ 0.04
NUP54-216ENST00000514901 AFPP02771 609 aaKnown RBP15.27■□□□□ 0.04
NUP54-216ENST00000514901 POU2F2P09086 479 aa15.27■□□□□ 0.04
NUP54-216ENST00000514901 MTHFRP42898 656 aa15.27■□□□□ 0.04
NUP54-216ENST00000514901 NOP14P78316 857 aaKnown RBP15.27■□□□□ 0.04
NUP54-216ENST00000514901 ADCY1Q08828 1119 aa15.27■□□□□ 0.04
NUP54-216ENST00000514901 KCNH2Q12809 1159 aa15.27■□□□□ 0.04
NUP54-216ENST00000514901 CLUL1Q15846 466 aa15.27■□□□□ 0.04
NUP54-216ENST00000514901 NFE2Q16621 373 aaPredicted RBP15.27■□□□□ 0.04
NUP54-216ENST00000514901 CBWD6Q4V339 395 aa15.27■□□□□ 0.04
NUP54-216ENST00000514901 CBWD3Q5JTY5 395 aa15.27■□□□□ 0.04
NUP54-216ENST00000514901 CBWD5Q5RIA9 395 aa15.27■□□□□ 0.04
NUP54-216ENST00000514901 PPM1LQ5SGD2 360 aa15.27■□□□□ 0.04
NUP54-216ENST00000514901 RARS2Q5T160 578 aaKnown RBP15.27■□□□□ 0.04
NUP54-216ENST00000514901 CREBRFQ8IUR6 639 aa15.27■□□□□ 0.04
NUP54-216ENST00000514901 OR10T2Q8NGX3 314 aa15.27■□□□□ 0.04
NUP54-216ENST00000514901 CNOT6LQ96LI5 555 aaKnown RBP15.27■□□□□ 0.04
NUP54-216ENST00000514901 RIPOR3Q96MK2 946 aa15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms