RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 HIC1Q14526 733 aa13.29□□□□□ -0.28
USP53-209ENST00000514665 IL17AQ16552 155 aa13.29□□□□□ -0.28
USP53-209ENST00000514665 ZNF677Q86XU0 584 aa13.29□□□□□ -0.28
USP53-209ENST00000514665 CAVIN3Q969G5 261 aa13.29□□□□□ -0.28
USP53-209ENST00000514665 ZNF560Q96MR9 790 aa13.29□□□□□ -0.28
USP53-209ENST00000514665 RSAD1Q9HA92 442 aa13.29□□□□□ -0.28
USP53-209ENST00000514665 TRAF3IP3Q9Y228 551 aa13.29□□□□□ -0.28
USP53-209ENST00000514665 TMX2Q9Y320 296 aa13.29□□□□□ -0.28
USP53-209ENST00000514665 ZBBXA8MT70 800 aa13.28□□□□□ -0.28
USP53-209ENST00000514665 PPP1R12AO14974 1030 aaPredicted RBP13.28□□□□□ -0.28
USP53-209ENST00000514665 SNRPAP09012 282 aaKnown RBP13.28□□□□□ -0.28
USP53-209ENST00000514665 CASP5P51878 434 aa13.28□□□□□ -0.28
USP53-209ENST00000514665 RBM46Q8TBY0 533 aaKnown RBP13.28□□□□□ -0.28
USP53-209ENST00000514665 DRC3Q9H069 523 aa13.28□□□□□ -0.28
USP53-209ENST00000514665 WDR70Q9NW82 654 aa13.28□□□□□ -0.28
USP53-209ENST00000514665 SIK3Q9Y2K2 1263 aa13.28□□□□□ -0.28
USP53-209ENST00000514665 UBA6A0AVT1 1052 aaPredicted RBP13.28□□□□□ -0.28
USP53-209ENST00000514665 ASB14A6NK59 587 aa13.28□□□□□ -0.28
USP53-209ENST00000514665 SLITRK3O94933 977 aa13.28□□□□□ -0.28
USP53-209ENST00000514665 ITGB3P05106 788 aa13.28□□□□□ -0.28
USP53-209ENST00000514665 GNAT1P11488 350 aa13.28□□□□□ -0.28
USP53-209ENST00000514665 TARSP26639 723 aaKnown RBP13.28□□□□□ -0.28
USP53-209ENST00000514665 SULT1E1P49888 294 aa13.28□□□□□ -0.28
USP53-209ENST00000514665 COBLL1Q53SF7 1204 aa13.28□□□□□ -0.28
USP53-209ENST00000514665 EMC1Q8N766 993 aa13.28□□□□□ -0.28
USP53-209ENST00000514665 ARMC2Q8NEN0 867 aa13.28□□□□□ -0.28
USP53-209ENST00000514665 HPDLQ96IR7 371 aa13.28□□□□□ -0.28
USP53-209ENST00000514665 FAM111AQ96PZ2 611 aa13.28□□□□□ -0.28
USP53-209ENST00000514665 BCL9O00512 1426 aa13.28□□□□□ -0.28
USP53-209ENST00000514665 IL1R1P14778 569 aa13.28□□□□□ -0.28
USP53-209ENST00000514665 RARRES1P49788 294 aa13.28□□□□□ -0.28
USP53-209ENST00000514665 TMEM119Q4V9L6 283 aa13.28□□□□□ -0.28
USP53-209ENST00000514665 MTBPQ96DY7 904 aa13.28□□□□□ -0.28
USP53-209ENST00000514665 IFT43Q96FT9 208 aa13.28□□□□□ -0.28
USP53-209ENST00000514665 TMEM121Q9BTD3 319 aa13.28□□□□□ -0.28
USP53-209ENST00000514665 NOD2Q9HC29 1040 aa13.28□□□□□ -0.28
USP53-209ENST00000514665 PAK5Q9P286 719 aa13.28□□□□□ -0.28
USP53-209ENST00000514665 TISP43B9A030 160 aa13.28□□□□□ -0.28
USP53-209ENST00000514665 ELF1P32519 619 aa13.28□□□□□ -0.28
USP53-209ENST00000514665 SNRPFP62306 86 aaKnown RBP13.28□□□□□ -0.28
USP53-209ENST00000514665 KCNMA1Q12791 1236 aa13.28□□□□□ -0.28
USP53-209ENST00000514665 DCAF6Q58WW2 860 aa13.28□□□□□ -0.28
USP53-209ENST00000514665 IER5Q5VY09 327 aa13.28□□□□□ -0.28
USP53-209ENST00000514665 MYOM1P52179 1685 aa13.27□□□□□ -0.28
USP53-209ENST00000514665 LOC102724159A0A0B4J2E5 919 aa13.27□□□□□ -0.28
USP53-209ENST00000514665 CSDE1O75534 798 aaKnown RBP13.27□□□□□ -0.28
USP53-209ENST00000514665 TCF7P36402 384 aaPredicted RBP13.27□□□□□ -0.28
USP53-209ENST00000514665 RFC5P40937 340 aa13.27□□□□□ -0.28
USP53-209ENST00000514665 PTENP60484 403 aa13.27□□□□□ -0.28
USP53-209ENST00000514665 PWP2Q15269 919 aaKnown RBP13.27□□□□□ -0.28
USP53-209ENST00000514665 Q4G0T1 1027 aa13.27□□□□□ -0.28
USP53-209ENST00000514665 ANO5Q75V66 913 aa13.27□□□□□ -0.28
USP53-209ENST00000514665 PPIL6Q8IXY8 311 aa13.27□□□□□ -0.28
USP53-209ENST00000514665 ZNF507Q8TCN5 953 aa13.27□□□□□ -0.28
USP53-209ENST00000514665 AFG1LQ8WV93 481 aa13.27□□□□□ -0.28
USP53-209ENST00000514665 C17orf75Q9HAS0 396 aa13.27□□□□□ -0.28
USP53-209ENST00000514665 GTPBP10A4D1E9 387 aaKnown RBP13.27□□□□□ -0.29
USP53-209ENST00000514665 CTSHP09668 335 aa13.27□□□□□ -0.29
USP53-209ENST00000514665 PYGMP11217 842 aa13.27□□□□□ -0.29
USP53-209ENST00000514665 ENO3P13929 434 aaPredicted RBP13.27□□□□□ -0.29
USP53-209ENST00000514665 CLCN3P51790 818 aa13.27□□□□□ -0.29
USP53-209ENST00000514665 AMHR2Q16671 573 aa13.27□□□□□ -0.29
USP53-209ENST00000514665 GLRA4Q5JXX5 417 aa13.27□□□□□ -0.29
USP53-209ENST00000514665 BTBD8Q5XKL5 378 aa13.27□□□□□ -0.29
USP53-209ENST00000514665 PRPF31Q8WWY3 499 aaKnown RBP13.27□□□□□ -0.29
USP53-209ENST00000514665 EPAS1Q99814 870 aa13.27□□□□□ -0.29
USP53-209ENST00000514665 PDCD2LQ9BRP1 358 aa13.27□□□□□ -0.29
USP53-209ENST00000514665 TSPYL2Q9H2G4 693 aaPredicted RBP13.27□□□□□ -0.29
USP53-209ENST00000514665 ACP6Q9NPH0 428 aa13.27□□□□□ -0.29
USP53-209ENST00000514665 MAP2K7O14733 419 aa13.27□□□□□ -0.29
USP53-209ENST00000514665 MYBL2P10244 700 aa13.27□□□□□ -0.29
USP53-209ENST00000514665 DPEP1P16444 411 aa13.27□□□□□ -0.29
USP53-209ENST00000514665 GPD1P21695 349 aa13.27□□□□□ -0.29
USP53-209ENST00000514665 HSD17B4P51659 736 aa13.27□□□□□ -0.29
USP53-209ENST00000514665 TMED1Q13445 227 aa13.27□□□□□ -0.29
USP53-209ENST00000514665 EFTUD2Q15029 972 aaKnown RBP eCLIP13.27□□□□□ -0.29
USP53-209ENST00000514665 KCNV1Q6PIU1 500 aa13.27□□□□□ -0.29
USP53-209ENST00000514665 LRRC6Q86X45 466 aa13.27□□□□□ -0.29
USP53-209ENST00000514665 KAT5Q92993 513 aa13.27□□□□□ -0.29
USP53-209ENST00000514665 BEGAINQ9BUH8 593 aa13.27□□□□□ -0.29
USP53-209ENST00000514665 DONSONQ9NYP3 566 aa13.27□□□□□ -0.29
USP53-209ENST00000514665 L3MBTL1Q9Y468 752 aa13.27□□□□□ -0.29
USP53-209ENST00000514665 SCTRP47872 440 aa13.26□□□□□ -0.29
USP53-209ENST00000514665 ARHGEF19Q8IW93 802 aa13.26□□□□□ -0.29
USP53-209ENST00000514665 SYTL5Q8TDW5 730 aaPredicted RBP13.26□□□□□ -0.29
USP53-209ENST00000514665 AENQ8WTP8 325 aaKnown RBP13.26□□□□□ -0.29
USP53-209ENST00000514665 GPRASP2Q96D09 838 aa13.26□□□□□ -0.29
USP53-209ENST00000514665 MTMR9Q96QG7 549 aa13.26□□□□□ -0.29
USP53-209ENST00000514665 HAUS8Q9BT25 410 aa13.26□□□□□ -0.29
USP53-209ENST00000514665 MANSC1Q9H8J5 431 aa13.26□□□□□ -0.29
USP53-209ENST00000514665 KCNQ5Q9NR82 932 aa13.26□□□□□ -0.29
USP53-209ENST00000514665 ORC6Q9Y5N6 252 aa13.26□□□□□ -0.29
USP53-209ENST00000514665 NEURL4Q96JN8 1562 aa13.26□□□□□ -0.29
USP53-209ENST00000514665 OGTO15294 1046 aa13.26□□□□□ -0.29
USP53-209ENST00000514665 ATXN8OSP0DMR3 200 aa13.26□□□□□ -0.29
USP53-209ENST00000514665 OTUD4Q01804 1114 aaKnown RBP13.26□□□□□ -0.29
USP53-209ENST00000514665 CBWD6Q4V339 395 aa13.26□□□□□ -0.29
USP53-209ENST00000514665 CBWD3Q5JTY5 395 aa13.26□□□□□ -0.29
USP53-209ENST00000514665 CBWD5Q5RIA9 395 aa13.26□□□□□ -0.29
USP53-209ENST00000514665 OTOP1Q7RTM1 612 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms