RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 UNQ6494/PRO21346Q6UXR6 183 aa22.1■■□□□ 1.13
SQSTM1-215ENST00000514093 NUP210Q8TEM1 1887 aaPredicted RBP22.1■■□□□ 1.13
SQSTM1-215ENST00000514093 SNX29Q8TEQ0 813 aa22.1■■□□□ 1.13
SQSTM1-215ENST00000514093 CHFRQ96EP1 664 aa22.1■■□□□ 1.13
SQSTM1-215ENST00000514093 ZC3H10Q96K80 434 aaKnown RBP22.1■■□□□ 1.13
SQSTM1-215ENST00000514093 HHIPQ96QV1 700 aa22.1■■□□□ 1.13
SQSTM1-215ENST00000514093 SLC46A2Q9BY10 475 aa22.1■■□□□ 1.13
SQSTM1-215ENST00000514093 OXCT2Q9BYC2 517 aaPredicted RBP22.1■■□□□ 1.13
SQSTM1-215ENST00000514093 HAPLN2Q9GZV7 340 aa22.1■■□□□ 1.13
SQSTM1-215ENST00000514093 TASP1Q9H6P5 420 aa22.1■■□□□ 1.13
SQSTM1-215ENST00000514093 THG1LQ9NWX6 298 aaKnown RBP22.1■■□□□ 1.13
SQSTM1-215ENST00000514093 LAMA1P25391 3075 aa22.1■■□□□ 1.13
SQSTM1-215ENST00000514093 C4orf47A7E2U8 309 aa22.09■■□□□ 1.13
SQSTM1-215ENST00000514093 PPEF2O14830 753 aa22.09■■□□□ 1.13
SQSTM1-215ENST00000514093 ATG13O75143 517 aa22.09■■□□□ 1.13
SQSTM1-215ENST00000514093 RNF40O75150 1001 aa22.09■■□□□ 1.13
SQSTM1-215ENST00000514093 EGFP01133 1207 aa22.09■■□□□ 1.13
SQSTM1-215ENST00000514093 MATR3P43243 847 aaKnown RBP eCLIP22.09■■□□□ 1.13
SQSTM1-215ENST00000514093 AARSP49588 968 aaKnown RBP eCLIP22.09■■□□□ 1.131e-7■□□□□ 8.5
SQSTM1-215ENST00000514093 MCM2P49736 904 aa22.09■■□□□ 1.13
SQSTM1-215ENST00000514093 FXR2P51116 673 aaKnown RBP eCLIP22.09■■□□□ 1.133e-7■■□□□ 12.6
SQSTM1-215ENST00000514093 NOVA1P51513 510 aaKnown RBP22.09■■□□□ 1.13
SQSTM1-215ENST00000514093 RAD51AP2Q09MP3 1159 aa22.09■■□□□ 1.13
SQSTM1-215ENST00000514093 FOXC1Q12948 553 aa22.09■■□□□ 1.13
SQSTM1-215ENST00000514093 STRN3Q13033 797 aa22.09■■□□□ 1.13
SQSTM1-215ENST00000514093 TTC38Q5R3I4 469 aa22.09■■□□□ 1.13
SQSTM1-215ENST00000514093 RINT1Q6NUQ1 792 aa22.09■■□□□ 1.13
SQSTM1-215ENST00000514093 ITIH5Q86UX2 942 aa22.09■■□□□ 1.13
SQSTM1-215ENST00000514093 C4orf32Q8N8J7 132 aa22.09■■□□□ 1.13
SQSTM1-215ENST00000514093 DRC1Q96MC2 740 aa22.09■■□□□ 1.13
SQSTM1-215ENST00000514093 SEPT5Q99719 369 aaPredicted RBP22.09■■□□□ 1.13
SQSTM1-215ENST00000514093 DUSP15Q9H1R2 295 aaPredicted RBP22.09■■□□□ 1.13
SQSTM1-215ENST00000514093 EBF3Q9H4W6 596 aa22.09■■□□□ 1.13
SQSTM1-215ENST00000514093 FBRSL1Q9HCM7 1045 aaKnown RBP22.09■■□□□ 1.13
SQSTM1-215ENST00000514093 HPS4Q9NQG7 708 aa22.09■■□□□ 1.13
SQSTM1-215ENST00000514093 DNM3Q9UQ16 869 aa22.09■■□□□ 1.13
SQSTM1-215ENST00000514093 FAM208BQ5VWN6 2430 aa22.09■■□□□ 1.13
SQSTM1-215ENST00000514093 PP2D1A8MPX8 630 aa22.08■■□□□ 1.13
SQSTM1-215ENST00000514093 FGF19O95750 216 aa22.08■■□□□ 1.13
SQSTM1-215ENST00000514093 TNFSF9P41273 254 aa22.08■■□□□ 1.13
SQSTM1-215ENST00000514093 CREB5Q02930 508 aa22.08■■□□□ 1.13
SQSTM1-215ENST00000514093 RUNX3Q13761 415 aa22.08■■□□□ 1.13
SQSTM1-215ENST00000514093 MYBPC2Q14324 1141 aa22.08■■□□□ 1.13
SQSTM1-215ENST00000514093 ZBTB6Q15916 424 aa22.08■■□□□ 1.13
SQSTM1-215ENST00000514093 ARMCX5Q6P1M9 558 aa22.08■■□□□ 1.13
SQSTM1-215ENST00000514093 C1orf186Q6ZWK4 172 aa22.08■■□□□ 1.13
SQSTM1-215ENST00000514093 GIPC2Q8TF65 315 aa22.08■■□□□ 1.13
SQSTM1-215ENST00000514093 FAM83CQ9BQN1 747 aa22.08■■□□□ 1.13
SQSTM1-215ENST00000514093 EDEM2Q9BV94 578 aa22.08■■□□□ 1.13
SQSTM1-215ENST00000514093 IL21Q9HBE4 155 aa22.08■■□□□ 1.13
SQSTM1-215ENST00000514093 ATRXP46100 2492 aa22.08■■□□□ 1.13
SQSTM1-215ENST00000514093 EML5Q05BV3 1969 aa22.08■■□□□ 1.12
SQSTM1-215ENST00000514093 ASPMQ8IZT6 3477 aa22.07■■□□□ 1.12
SQSTM1-215ENST00000514093 TTC26A0AVF1 554 aa22.07■■□□□ 1.12
SQSTM1-215ENST00000514093 CLDN3O15551 220 aa22.07■■□□□ 1.12
SQSTM1-215ENST00000514093 TOP3BO95985 862 aaKnown RBP22.07■■□□□ 1.12
SQSTM1-215ENST00000514093 U2AF2P26368 475 aaKnown RBP eCLIP22.07■■□□□ 1.12
SQSTM1-215ENST00000514093 WEE1P30291 646 aa22.07■■□□□ 1.12
SQSTM1-215ENST00000514093 CDC25AP30304 524 aa22.07■■□□□ 1.12
SQSTM1-215ENST00000514093 ST3GAL1Q11201 340 aa22.07■■□□□ 1.12
SQSTM1-215ENST00000514093 PTPAQ15257 358 aa22.07■■□□□ 1.12
SQSTM1-215ENST00000514093 MGAT5BQ3V5L5 792 aa22.07■■□□□ 1.12
SQSTM1-215ENST00000514093 NAIF1Q69YI7 327 aaPredicted RBP22.07■■□□□ 1.12
SQSTM1-215ENST00000514093 KCNK18Q7Z418 384 aa22.07■■□□□ 1.12
SQSTM1-215ENST00000514093 OR10T2Q8NGX3 314 aa22.07■■□□□ 1.12
SQSTM1-215ENST00000514093 PLEKHA5Q9HAU0 1116 aa22.07■■□□□ 1.12
SQSTM1-215ENST00000514093 UBQLN1Q9UMX0 589 aaKnown RBP22.07■■□□□ 1.12
SQSTM1-215ENST00000514093 CCL26Q9Y258 94 aa22.07■■□□□ 1.12
SQSTM1-215ENST00000514093 LACTBL1A8MY62 500 aa22.06■■□□□ 1.12
SQSTM1-215ENST00000514093 TRDMT1O14717 391 aaKnown RBP22.06■■□□□ 1.12
SQSTM1-215ENST00000514093 AKAP3O75969 853 aa22.06■■□□□ 1.12
SQSTM1-215ENST00000514093 ATF6P18850 670 aa22.06■■□□□ 1.12
SQSTM1-215ENST00000514093 MCL1Q07820 350 aa22.06■■□□□ 1.12
SQSTM1-215ENST00000514093 ZNF252P-AS1Q0IIN9 211 aa22.06■■□□□ 1.12
SQSTM1-215ENST00000514093 ORC2Q13416 577 aaPredicted RBP22.06■■□□□ 1.12
SQSTM1-215ENST00000514093 SLC39A12Q504Y0 691 aa22.06■■□□□ 1.12
SQSTM1-215ENST00000514093 CAMKK1Q8N5S9 505 aa22.06■■□□□ 1.12
SQSTM1-215ENST00000514093 TMEM161BQ8NDZ6 487 aa22.06■■□□□ 1.12
SQSTM1-215ENST00000514093 NTPCRQ9BSD7 190 aaKnown RBP22.06■■□□□ 1.12
SQSTM1-215ENST00000514093 INVSQ9Y283 1065 aa22.06■■□□□ 1.12
SQSTM1-215ENST00000514093 ZZEF1O43149 2961 aa22.05■■□□□ 1.12
SQSTM1-215ENST00000514093 CAVIN2O95810 425 aa22.05■■□□□ 1.12
SQSTM1-215ENST00000514093 CLTAP09496 248 aa22.05■■□□□ 1.12
SQSTM1-215ENST00000514093 MAPTP10636 758 aaKnown RBP22.05■■□□□ 1.12
SQSTM1-215ENST00000514093 ARSAP15289 507 aa22.05■■□□□ 1.12
SQSTM1-215ENST00000514093 TYMPP19971 482 aa22.05■■□□□ 1.12
SQSTM1-215ENST00000514093 CYP3A5P20815 502 aa22.05■■□□□ 1.12
SQSTM1-215ENST00000514093 CDC25CP30307 473 aa22.05■■□□□ 1.12
SQSTM1-215ENST00000514093 NMT1P30419 496 aaKnown RBP22.05■■□□□ 1.12
SQSTM1-215ENST00000514093 GALK1P51570 392 aa22.05■■□□□ 1.12
SQSTM1-215ENST00000514093 LILRA4P59901 499 aa22.05■■□□□ 1.12
SQSTM1-215ENST00000514093 PPP2R3AQ06190 1150 aa22.05■■□□□ 1.12
SQSTM1-215ENST00000514093 CMTM8Q8IZV2 173 aa22.05■■□□□ 1.12
SQSTM1-215ENST00000514093 SENP8Q96LD8 212 aa22.05■■□□□ 1.12
SQSTM1-215ENST00000514093 GCNAQ96QF7 691 aa22.05■■□□□ 1.12
SQSTM1-215ENST00000514093 SPEGQ15772 3267 aa22.05■■□□□ 1.12
SQSTM1-215ENST00000514093 TUFMP49411 452 aaKnown RBP22.04■■□□□ 1.12
SQSTM1-215ENST00000514093 PDIA5Q14554 519 aa22.04■■□□□ 1.12
SQSTM1-215ENST00000514093 VEPH1Q14D04 833 aa22.04■■□□□ 1.12
SQSTM1-215ENST00000514093 ZRSR1Q15695 479 aaKnown RBP22.04■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms