RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 TTC9BQ8N6N2 239 aa11.93□□□□□ -0.5
DDX41-216ENST00000513562 ATAD1Q8NBU5 361 aa11.93□□□□□ -0.5
DDX41-216ENST00000513562 ERMNQ8TAM6 284 aa11.93□□□□□ -0.5
DDX41-216ENST00000513562 WASF1Q92558 559 aa11.93□□□□□ -0.5
DDX41-216ENST00000513562 YTHDC1Q96MU7 727 aaKnown RBP11.93□□□□□ -0.5
DDX41-216ENST00000513562 IL21Q9HBE4 155 aa11.93□□□□□ -0.5
DDX41-216ENST00000513562 GKN1Q9NS71 199 aa11.93□□□□□ -0.5
DDX41-216ENST00000513562 ARHGAP28Q9P2N2 729 aa11.93□□□□□ -0.5
DDX41-216ENST00000513562 HSFX1Q9UBD0 423 aa11.93□□□□□ -0.5
DDX41-216ENST00000513562 SLC27A5Q9Y2P5 690 aa11.93□□□□□ -0.5
DDX41-216ENST00000513562 SMG1Q96Q15 3661 aaKnown RBP11.93□□□□□ -0.5
DDX41-216ENST00000513562 LOC400499M0QZD8 3231 aa11.93□□□□□ -0.5
DDX41-216ENST00000513562 LAMA5O15230 3695 aa11.92□□□□□ -0.5
DDX41-216ENST00000513562 DSPP15924 2871 aaKnown RBP11.92□□□□□ -0.5
DDX41-216ENST00000513562 BTBD18B2RXH4 712 aa11.92□□□□□ -0.5
DDX41-216ENST00000513562 TAF4O00268 1085 aa11.92□□□□□ -0.5
DDX41-216ENST00000513562 KHNYNO15037 678 aaKnown RBP11.92□□□□□ -0.5
DDX41-216ENST00000513562 PFKFB2O60825 505 aa11.92□□□□□ -0.5
DDX41-216ENST00000513562 SOAT2O75908 522 aa11.92□□□□□ -0.5
DDX41-216ENST00000513562 LARGE1O95461 756 aa11.92□□□□□ -0.5
DDX41-216ENST00000513562 FDPSP14324 419 aaKnown RBP11.92□□□□□ -0.5
DDX41-216ENST00000513562 DRD1P21728 446 aa11.92□□□□□ -0.5
DDX41-216ENST00000513562 CDC25CP30307 473 aa11.92□□□□□ -0.5
DDX41-216ENST00000513562 LRPAP1P30533 357 aa11.92□□□□□ -0.5
DDX41-216ENST00000513562 FBXO43Q4G163 708 aa11.92□□□□□ -0.5
DDX41-216ENST00000513562 PMS2CLQ68D20 193 aa11.92□□□□□ -0.5
DDX41-216ENST00000513562 TRIM68Q6AZZ1 485 aa11.92□□□□□ -0.5
DDX41-216ENST00000513562 USP37Q86T82 979 aa11.92□□□□□ -0.5
DDX41-216ENST00000513562 C11orf74Q86VG3 221 aa11.92□□□□□ -0.5
DDX41-216ENST00000513562 TMEM130Q8N3G9 435 aa11.92□□□□□ -0.5
DDX41-216ENST00000513562 TCHPQ9BT92 498 aa11.92□□□□□ -0.5
DDX41-216ENST00000513562 SLC46A2Q9BY10 475 aa11.92□□□□□ -0.5
DDX41-216ENST00000513562 SMG9Q9H0W8 520 aaKnown RBP11.92□□□□□ -0.5
DDX41-216ENST00000513562 BHMT2Q9H2M3 363 aa11.92□□□□□ -0.5
DDX41-216ENST00000513562 EBF3Q9H4W6 596 aa11.92□□□□□ -0.5
DDX41-216ENST00000513562 FBRSL1Q9HCM7 1045 aaKnown RBP11.92□□□□□ -0.5
DDX41-216ENST00000513562 PDRG1Q9NUG6 133 aa11.92□□□□□ -0.5
DDX41-216ENST00000513562 ZMYM5Q9UJ78 669 aa11.92□□□□□ -0.5
DDX41-216ENST00000513562 CCDC169A6NNP5 214 aa11.91□□□□□ -0.5
DDX41-216ENST00000513562 EPB41L2O43491 1005 aaKnown RBP11.91□□□□□ -0.5
DDX41-216ENST00000513562 HARSP12081 509 aaKnown RBP11.91□□□□□ -0.5
DDX41-216ENST00000513562 TYMPP19971 482 aa11.91□□□□□ -0.5
DDX41-216ENST00000513562 PEX3P56589 373 aa11.91□□□□□ -0.5
DDX41-216ENST00000513562 AMPD2Q01433 879 aa11.91□□□□□ -0.5
DDX41-216ENST00000513562 DMC1Q14565 340 aa11.91□□□□□ -0.5
DDX41-216ENST00000513562 ECM1Q16610 540 aa11.91□□□□□ -0.5
DDX41-216ENST00000513562 OVOS1Q6IE37 1185 aa11.91□□□□□ -0.5
DDX41-216ENST00000513562 KIAA1211LQ6NV74 962 aa11.91□□□□□ -0.5
DDX41-216ENST00000513562 DIS3L2Q8IYB7 885 aaKnown RBP11.91□□□□□ -0.5
DDX41-216ENST00000513562 CMTM8Q8IZV2 173 aa11.91□□□□□ -0.5
DDX41-216ENST00000513562 DEFB124Q8NES8 71 aa11.91□□□□□ -0.5
DDX41-216ENST00000513562 RPLP0P6Q8NHW5 317 aa11.91□□□□□ -0.5
DDX41-216ENST00000513562 GCNAQ96QF7 691 aa11.91□□□□□ -0.5
DDX41-216ENST00000513562 LPIN3Q9BQK8 851 aa11.91□□□□□ -0.5
DDX41-216ENST00000513562 TBX20Q9UMR3 447 aa11.91□□□□□ -0.5
DDX41-216ENST00000513562 MSRB2Q9Y3D2 182 aa11.91□□□□□ -0.5
DDX41-216ENST00000513562 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.91□□□□□ -0.5
DDX41-216ENST00000513562 PDCD11Q14690 1871 aaKnown RBP11.91□□□□□ -0.5
DDX41-216ENST00000513562 PATE3B3GLJ2 98 aa11.9□□□□□ -0.5
DDX41-216ENST00000513562 HYAL3O43820 417 aaPredicted RBP11.9□□□□□ -0.5
DDX41-216ENST00000513562 TOM1L1O75674 476 aa11.9□□□□□ -0.5
DDX41-216ENST00000513562 ARSAP15289 507 aa11.9□□□□□ -0.5
DDX41-216ENST00000513562 ATF6P18850 670 aa11.9□□□□□ -0.5
DDX41-216ENST00000513562 CYP3A5P20815 502 aa11.9□□□□□ -0.5
DDX41-216ENST00000513562 GBP1P32455 592 aa11.9□□□□□ -0.5
DDX41-216ENST00000513562 MCM7P33993 719 aa11.9□□□□□ -0.5
DDX41-216ENST00000513562 GALK1P51570 392 aa11.9□□□□□ -0.5
DDX41-216ENST00000513562 DMP1Q13316 513 aaPredicted RBP11.9□□□□□ -0.5
DDX41-216ENST00000513562 NOLC1Q14978 699 aaKnown RBP eCLIP11.9□□□□□ -0.5
DDX41-216ENST00000513562 VEPH1Q14D04 833 aa11.9□□□□□ -0.5
DDX41-216ENST00000513562 ZBTB6Q15916 424 aa11.9□□□□□ -0.5
DDX41-216ENST00000513562 HAUS3Q68CZ6 603 aa11.9□□□□□ -0.5
DDX41-216ENST00000513562 NAIF1Q69YI7 327 aaPredicted RBP11.9□□□□□ -0.5
DDX41-216ENST00000513562 RALGAPA1Q6GYQ0 2036 aa11.9□□□□□ -0.5
DDX41-216ENST00000513562 CYP2U1Q7Z449 544 aa11.9□□□□□ -0.5
DDX41-216ENST00000513562 DAW1Q8N136 415 aa11.9□□□□□ -0.5
DDX41-216ENST00000513562 EZH1Q92800 747 aaPredicted RBP11.9□□□□□ -0.5
DDX41-216ENST00000513562 USP13Q92995 863 aaPredicted RBP11.9□□□□□ -0.5
DDX41-216ENST00000513562 ACDQ96AP0 544 aa11.9□□□□□ -0.5
DDX41-216ENST00000513562 ZBTB45Q96K62 511 aaPredicted RBP11.9□□□□□ -0.5
DDX41-216ENST00000513562 P2RY13Q9BPV8 354 aa11.9□□□□□ -0.5
DDX41-216ENST00000513562 KIF9Q9HAQ2 790 aa11.9□□□□□ -0.5
DDX41-216ENST00000513562 PLEKHA5Q9HAU0 1116 aa11.9□□□□□ -0.5
DDX41-216ENST00000513562 KMT5AQ9NQR1 393 aa11.9□□□□□ -0.5
DDX41-216ENST00000513562 CCL26Q9Y258 94 aa11.9□□□□□ -0.5
DDX41-216ENST00000513562 RBM19Q9Y4C8 960 aaKnown RBP11.9□□□□□ -0.5
DDX41-216ENST00000513562 OR52Z1P0C646 297 aa11.89□□□□□ -0.51
DDX41-216ENST00000513562 CXCL8P10145 99 aa11.89□□□□□ -0.51
DDX41-216ENST00000513562 U2AF2P26368 475 aaKnown RBP eCLIP11.89□□□□□ -0.51
DDX41-216ENST00000513562 GJA4P35212 333 aa11.89□□□□□ -0.51
DDX41-216ENST00000513562 AVPR1AP37288 418 aa11.89□□□□□ -0.51
DDX41-216ENST00000513562 TUFMP49411 452 aaKnown RBP11.89□□□□□ -0.51
DDX41-216ENST00000513562 IRX4P78413 519 aa11.89□□□□□ -0.51
DDX41-216ENST00000513562 SPAG1Q07617 926 aa11.89□□□□□ -0.51
DDX41-216ENST00000513562 PDGFRLQ15198 375 aa11.89□□□□□ -0.51
DDX41-216ENST00000513562 SEZ6Q53EL9 994 aa11.89□□□□□ -0.51
DDX41-216ENST00000513562 USP39Q53GS9 565 aaKnown RBP11.89□□□□□ -0.51
DDX41-216ENST00000513562 ARMCX5Q6P1M9 558 aa11.89□□□□□ -0.51
DDX41-216ENST00000513562 DSTYKQ6XUX3 929 aa11.89□□□□□ -0.51
DDX41-216ENST00000513562 CENPQQ7L2Z9 268 aaPredicted RBP11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms