RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 TARSP26639 723 aaKnown RBP11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 EIF2B5Q13144 721 aaKnown RBP11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 NAB2Q15742 525 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 DDR2Q16832 855 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 SPDYCQ5MJ68 293 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 CACHD1Q5VU97 1274 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 PID1Q7Z2X4 250 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 ULK2Q8IYT8 1036 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 GRPEL2Q8TAA5 225 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 CAPSLQ8WWF8 208 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 MNTQ99583 582 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 WDR12Q9GZL7 423 aaKnown RBP11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 CAMSAP3Q9P1Y5 1249 aaPredicted RBP11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 TMA7Q9Y2S6 64 aaKnown RBP11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 GDAQ9Y2T3 454 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 STARD13Q9Y3M8 1113 aa11.7□□□□□ -0.54
LIMCH1-208ENST00000508501 UBA6A0AVT1 1052 aaPredicted RBP11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 TLR2O60603 784 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 SOAT2O75908 522 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 RARGP13631 454 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 CDH3P22223 829 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 IL13P35225 146 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 VAMP7P51809 220 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 SPIRE1Q08AE8 756 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 NECTIN1Q15223 517 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 TSNQ15631 228 aaKnown RBP11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 KCNT1Q5JUK3 1230 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 RNF219Q5W0B1 726 aaPredicted RBP11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 TMC4Q7Z404 712 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 SUN5Q8TC36 379 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 NGLY1Q96IV0 654 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 GORASP1Q9BQQ3 440 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 PLEKHG1Q9ULL1 1385 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 NEMP1O14524 444 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 CD3EAPO15446 510 aaKnown RBP11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 TMEM253P0C7T8 217 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 CCND2P30279 289 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 NNMTP40261 264 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 FAM83EQ2M2I3 478 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 SIX5Q8N196 739 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 RAD54LQ92698 747 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 CAVIN3Q969G5 261 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 BORCS5Q969J3 196 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 STK33Q9BYT3 514 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 DHX36Q9H2U1 1008 aaKnown RBP11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 TIMMDC1Q9NPL8 285 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 COMMD9Q9P000 198 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 CNOT7Q9UIV1 285 aaKnown RBP11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 PCDHB8Q9UN66 801 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 ARHGEF10O15013 1369 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 F8W810 466 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 PDXKO00764 312 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 CLOCKO15516 846 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 GSTT1P30711 240 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 NCALDP61601 193 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 CDO1Q16878 200 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 BICRALQ6AI39 1079 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 LIN54Q6MZP7 749 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 CDC73Q6P1J9 531 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 DPP8Q6V1X1 898 aaPredicted RBP11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 PPIL6Q8IXY8 311 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 C4orf33Q8N1A6 199 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 LRRC17Q8N6Y2 441 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 KBTBD8Q8NFY9 601 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 C1orf54Q8WWF1 131 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 C2orf40Q9H1Z8 148 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 DYRK4Q9NR20 520 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 COMMD8Q9NX08 183 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 FARP1Q9Y4F1 1045 aaPredicted RBP11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 KIF14Q15058 1648 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 SYNCRIPO60506 623 aaKnown RBP11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 PCCAP05165 728 aaPredicted RBP11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 USP11P51784 963 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 CTSWP56202 376 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 CCNA1P78396 465 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 LRRC74AQ0VAA2 488 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 CHI3L2Q15782 390 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 TRAPPC3LQ5T215 181 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 RBM20Q5T481 1227 aaKnown RBP11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 LRRC74BQ6ZQY2 392 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 ERO1BQ86YB8 467 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 DDX50Q9BQ39 737 aaKnown RBP11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 RPRD1BQ9NQG5 326 aaKnown RBP11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 NDFIP2Q9NV92 336 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 RRN3Q9NYV6 651 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 DBR1Q9UK59 544 aaKnown RBP11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 GSTK1Q9Y2Q3 226 aa11.69□□□□□ -0.54
LIMCH1-208ENST00000508501 CYP2D7A0A087X1C5 515 aa11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 MATN2O00339 956 aa11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 GDF11O95390 407 aa11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 MLNP12872 115 aa11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 GYS1P13807 737 aa11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 ALOX12P18054 663 aa11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 GNA15P30679 374 aa11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 STIP1P31948 543 aaKnown RBP11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 CDH6P55285 790 aa11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 RPS8P62241 208 aaKnown RBP11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 ZNF846Q147U1 533 aa11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 C5orf22Q49AR2 442 aa11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 FAM98BQ52LJ0 330 aaKnown RBP11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms