RNA–Protein interactions for RNA: ENST00000504663.1

TPM3-217, Transcript of tropomyosin 3, humanhuman

TSL 2

Gene TPM3, Length 870 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-217ENST00000504663 ALKBH5Q6P6C2 394 aaKnown RBP11.1□□□□□ -0.63
TPM3-217ENST00000504663 CNKSR3Q6P9H4 555 aa11.1□□□□□ -0.63
TPM3-217ENST00000504663 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.1□□□□□ -0.63
TPM3-217ENST00000504663 ZNF677Q86XU0 584 aa11.1□□□□□ -0.63
TPM3-217ENST00000504663 ZNF280BQ86YH2 543 aa11.1□□□□□ -0.63
TPM3-217ENST00000504663 C16orf45Q96MC5 204 aaPredicted RBP11.1□□□□□ -0.63
TPM3-217ENST00000504663 ZNF560Q96MR9 790 aa11.1□□□□□ -0.63
TPM3-217ENST00000504663 UBN1Q9NPG3 1134 aa11.1□□□□□ -0.63
TPM3-217ENST00000504663 TMEM39AQ9NV64 488 aa11.1□□□□□ -0.63
TPM3-217ENST00000504663 SLC38A7Q9NVC3 462 aa11.1□□□□□ -0.63
TPM3-217ENST00000504663 TBC1D13Q9NVG8 400 aa11.1□□□□□ -0.63
TPM3-217ENST00000504663 BARX2Q9UMQ3 279 aaPredicted RBP11.1□□□□□ -0.63
TPM3-217ENST00000504663 COL4A4P53420 1690 aaPredicted RBP11.1□□□□□ -0.63
TPM3-217ENST00000504663 BTNL10A8MVZ5 291 aa11.09□□□□□ -0.63
TPM3-217ENST00000504663 KPNA7A9QM74 516 aa11.09□□□□□ -0.63
TPM3-217ENST00000504663 BRD2P25440 801 aaKnown RBP11.09□□□□□ -0.63
TPM3-217ENST00000504663 CDH5P33151 784 aaPredicted RBP11.09□□□□□ -0.63
TPM3-217ENST00000504663 RFC2P35250 354 aa11.09□□□□□ -0.63
TPM3-217ENST00000504663 PNPLA4P41247 253 aa11.09□□□□□ -0.63
TPM3-217ENST00000504663 MAGEA1P43355 309 aa11.09□□□□□ -0.63
TPM3-217ENST00000504663 NDST1P52848 882 aa11.09□□□□□ -0.63
TPM3-217ENST00000504663 KRT83P78385 493 aa11.09□□□□□ -0.63
TPM3-217ENST00000504663 CENPCQ03188 943 aa11.09□□□□□ -0.63
TPM3-217ENST00000504663 CCDC142Q17RM4 750 aa11.09□□□□□ -0.63
TPM3-217ENST00000504663 CLEC16AQ2KHT3 1053 aa11.09□□□□□ -0.63
TPM3-217ENST00000504663 NOMO2Q5JPE7 1267 aa11.09□□□□□ -0.63
TPM3-217ENST00000504663 KIAA0319Q5VV43 1072 aa11.09□□□□□ -0.63
TPM3-217ENST00000504663 DEFB128Q7Z7B8 93 aa11.09□□□□□ -0.63
TPM3-217ENST00000504663 COLGALT2Q8IYK4 626 aa11.09□□□□□ -0.63
TPM3-217ENST00000504663 PDCL2Q8N4E4 241 aa11.09□□□□□ -0.63
TPM3-217ENST00000504663 WDTC1Q8N5D0 677 aa11.09□□□□□ -0.63
TPM3-217ENST00000504663 RNF169Q8NCN4 708 aa11.09□□□□□ -0.63
TPM3-217ENST00000504663 ZNF606Q8WXB4 792 aa11.09□□□□□ -0.63
TPM3-217ENST00000504663 RABGGTAQ92696 567 aa11.09□□□□□ -0.63
TPM3-217ENST00000504663 ARHGEF26Q96DR7 871 aa11.09□□□□□ -0.63
TPM3-217ENST00000504663 WDR24Q96S15 920 aa11.09□□□□□ -0.63
TPM3-217ENST00000504663 RPS6KC1Q96S38 1066 aa11.09□□□□□ -0.63
TPM3-217ENST00000504663 RTP3Q9BQQ7 232 aa11.09□□□□□ -0.63
TPM3-217ENST00000504663 TMEM106CQ9BVX2 250 aa11.09□□□□□ -0.63
TPM3-217ENST00000504663 DEF6Q9H4E7 631 aa11.09□□□□□ -0.63
TPM3-217ENST00000504663 LZTFL1Q9NQ48 299 aa11.09□□□□□ -0.63
TPM3-217ENST00000504663 CYTH4Q9UIA0 394 aa11.09□□□□□ -0.63
TPM3-217ENST00000504663 PCDHGC3Q9UN70 934 aa11.09□□□□□ -0.63
TPM3-217ENST00000504663 INPP5FQ9Y2H2 1132 aa11.09□□□□□ -0.63
TPM3-217ENST00000504663 SNX9Q9Y5X1 595 aa11.09□□□□□ -0.63
TPM3-217ENST00000504663 CAPN6Q9Y6Q1 641 aa11.09□□□□□ -0.63
TPM3-217ENST00000504663 GOLGA6L9A6NEM1 432 aa11.08□□□□□ -0.64
TPM3-217ENST00000504663 TMEM189-UBE2V1I3L0A0 370 aa11.08□□□□□ -0.64
TPM3-217ENST00000504663 M0QZQ0 153 aa11.08□□□□□ -0.64
TPM3-217ENST00000504663 O00370 1275 aa11.08□□□□□ -0.64
TPM3-217ENST00000504663 GABRDO14764 452 aa11.08□□□□□ -0.64
TPM3-217ENST00000504663 CCP110O43303 1012 aa11.08□□□□□ -0.64
TPM3-217ENST00000504663 KIF4AO95239 1232 aa11.08□□□□□ -0.64
TPM3-217ENST00000504663 EFEMP2O95967 443 aa11.08□□□□□ -0.64
TPM3-217ENST00000504663 PAEPP09466 180 aa11.08□□□□□ -0.64
TPM3-217ENST00000504663 CCDC172P0C7W6 258 aa11.08□□□□□ -0.64
TPM3-217ENST00000504663 GZMAP12544 262 aa11.08□□□□□ -0.64
TPM3-217ENST00000504663 WARSP23381 471 aaKnown RBP11.08□□□□□ -0.64
TPM3-217ENST00000504663 RPL9P32969 192 aaKnown RBP11.08□□□□□ -0.64
TPM3-217ENST00000504663 MLLT3P42568 568 aaPredicted RBP11.08□□□□□ -0.64
TPM3-217ENST00000504663 GALCP54803 685 aa11.08□□□□□ -0.64
TPM3-217ENST00000504663 TNNC1P63316 161 aa11.08□□□□□ -0.64
TPM3-217ENST00000504663 MYO1EQ12965 1108 aa11.08□□□□□ -0.64
TPM3-217ENST00000504663 TCEAL1Q15170 157 aa11.08□□□□□ -0.64
TPM3-217ENST00000504663 SV2CQ496J9 727 aa11.08□□□□□ -0.64
TPM3-217ENST00000504663 PKDCCQ504Y2 493 aa11.08□□□□□ -0.64
TPM3-217ENST00000504663 TIGD5Q53EQ6 642 aa11.08□□□□□ -0.64
TPM3-217ENST00000504663 ZNF394Q53GI3 561 aa11.08□□□□□ -0.64
TPM3-217ENST00000504663 CCDC122Q5T0U0 273 aa11.08□□□□□ -0.64
TPM3-217ENST00000504663 MFSD5Q6N075 450 aa11.08□□□□□ -0.64
TPM3-217ENST00000504663 GLB1LQ6UWU2 654 aa11.08□□□□□ -0.64
TPM3-217ENST00000504663 MON1BQ7L1V2 547 aa11.08□□□□□ -0.64
TPM3-217ENST00000504663 C16orf59Q7L2K0 433 aa11.08□□□□□ -0.64
TPM3-217ENST00000504663 NPAS4Q8IUM7 802 aa11.08□□□□□ -0.64
TPM3-217ENST00000504663 TOP6BLQ8N6T0 577 aa11.08□□□□□ -0.64
TPM3-217ENST00000504663 LPIN3Q9BQK8 851 aa11.08□□□□□ -0.64
TPM3-217ENST00000504663 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.08□□□□□ -0.64
TPM3-217ENST00000504663 DPEP3Q9H4B8 488 aa11.08□□□□□ -0.64
TPM3-217ENST00000504663 MARCH5Q9NX47 278 aa11.08□□□□□ -0.64
TPM3-217ENST00000504663 DNAJB4Q9UDY4 337 aa11.08□□□□□ -0.64
TPM3-217ENST00000504663 INTUQ9ULD6 942 aa11.08□□□□□ -0.64
TPM3-217ENST00000504663 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.08□□□□□ -0.64
TPM3-217ENST00000504663 MYH10P35580 1976 aa11.08□□□□□ -0.64
TPM3-217ENST00000504663 TCRBV5S1A1TA0A578 114 aa11.07□□□□□ -0.64
TPM3-217ENST00000504663 FAM170AA1A519 330 aa11.07□□□□□ -0.64
TPM3-217ENST00000504663 CYP11A1P05108 521 aa11.07□□□□□ -0.64
TPM3-217ENST00000504663 PFKMP08237 780 aa11.07□□□□□ -0.64
TPM3-217ENST00000504663 TMEM253P0C7T8 217 aa11.07□□□□□ -0.64
TPM3-217ENST00000504663 CSF2RAP15509 400 aa11.07□□□□□ -0.64
TPM3-217ENST00000504663 TNFAIP3P21580 790 aa11.07□□□□□ -0.64
TPM3-217ENST00000504663 IBSPP21815 317 aaPredicted RBP11.07□□□□□ -0.64
TPM3-217ENST00000504663 LMO2P25791 158 aa11.07□□□□□ -0.64
TPM3-217ENST00000504663 SSTR3P32745 418 aaPredicted RBP11.07□□□□□ -0.64
TPM3-217ENST00000504663 BRCC3P46736 316 aa11.07□□□□□ -0.64
TPM3-217ENST00000504663 PSEN1P49768 467 aa11.07□□□□□ -0.64
TPM3-217ENST00000504663 BPIFB4P59827 614 aa11.07□□□□□ -0.64
TPM3-217ENST00000504663 YWHAEP62258 255 aaKnown RBP11.07□□□□□ -0.64
TPM3-217ENST00000504663 ETF1P62495 437 aaKnown RBP11.07□□□□□ -0.64
TPM3-217ENST00000504663 DEFB103AP81534 67 aa11.07□□□□□ -0.64
TPM3-217ENST00000504663 SPA17Q15506 151 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms