RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 PLIN4Q96Q06 1357 aa11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 ABCA3Q99758 1704 aa11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 A0A1W2PQJ5 194 aa11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 M0QZ92 97 aa11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 ATP2A1O14983 1001 aa11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 RASSF9O75901 435 aa11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 FDX1P10109 184 aa11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 HOXD13P35453 343 aa11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 HSD17B4P51659 736 aa11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 COPS2P61201 443 aa11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 ATF7IP2Q5U623 682 aa11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 OLFML2BQ68BL8 750 aa11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 SLFN12LQ6IEE8 588 aa11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 ARMCX2Q7L311 632 aa11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 TMEM161BQ8NDZ6 487 aa11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 FAM81AQ8TBF8 368 aa11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 SEMA4DQ92854 862 aa11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 MCEEQ96PE7 176 aa11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 ANKEF1Q9NU02 776 aa11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 FGFR1OP2Q9NVK5 253 aa11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 HESX1Q9UBX0 185 aa11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 GOLGA4Q13439 2230 aaKnown RBP11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 AGPSO00116 658 aa11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 KRT10P13645 584 aa11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 AKAP5P24588 427 aa11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 CRELD2Q6UXH1 353 aaPredicted RBP11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 SPATA21Q7Z572 469 aa11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 MYLK4Q86YV6 388 aaPredicted RBP11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 NME8Q8N427 588 aa11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 CCDC89Q8N998 374 aa11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 DTX3LQ8TDB6 740 aa11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 LRRN4Q8WUT4 740 aa11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 CASKIN2Q8WXE0 1202 aa11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 KRT35Q92764 455 aa11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 GGA2Q9UJY4 613 aa11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 EME2A4GXA9 379 aaPredicted RBP11.32□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 UPP2O95045 317 aa11.32□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 CYP11B1P15538 503 aa11.32□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 PSMA2P25787 234 aa11.32□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 LAMTOR4Q0VGL1 99 aa11.32□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 ALCAMQ13740 583 aa11.32□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 NOP9Q86U38 636 aaKnown RBP11.32□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 CTAGE3PQ8IX95 158 aa11.32□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 TPCN2Q8NHX9 752 aa11.32□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 ZMAT2Q96NC0 199 aaKnown RBP11.32□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 C10orf88Q9H8K7 445 aa11.32□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 GBA2Q9HCG7 927 aaPredicted RBP11.32□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 SNCAIPQ9Y6H5 919 aa11.32□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 SLC4A7Q9Y6M7 1214 aa11.32□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 TRAPPC3O43617 180 aa11.32□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 RNF8O76064 485 aa11.32□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 NPTXRO95502 500 aa11.32□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 GLRA2P23416 452 aa11.32□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 PSMC1P62191 440 aaKnown RBP11.32□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 KRT81Q14533 505 aa11.32□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 GNASQ5JWF2 1037 aa11.32□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 WLSQ5T9L3 541 aa11.32□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 SLC17A8Q8NDX2 589 aa11.32□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 HASPINQ8TF76 798 aa11.32□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 SMCHD1A6NHR9 2005 aa11.32□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 H7C0C1 242 aa11.32□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 CAPN9O14815 690 aa11.32□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 NPM3O75607 178 aaKnown RBP11.32□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 GAS8O95995 478 aa11.32□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 PHKA2P46019 1235 aa11.32□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 ATP5OP48047 213 aa11.32□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 ERVK-9P63128 1117 aa11.32□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 MEA1Q16626 185 aa11.32□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 GPAT2Q6NUI2 795 aa11.32□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 APBB1IPQ7Z5R6 666 aaPredicted RBP11.32□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 PRUNE1Q86TP1 453 aa11.32□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 RFX6Q8HWS3 928 aa11.32□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 TMEM8AQ9HCN3 771 aa11.32□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 ATRNL1Q5VV63 1379 aa11.31□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 DDX60Q8IY21 1712 aaKnown RBP11.31□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 H3BRB1 525 aa11.31□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 UBTFL6P0CB48 400 aaPredicted RBP11.31□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 PMS2P54278 862 aa11.31□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 BASP1P80723 227 aaKnown RBP11.31□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 ITIH3Q06033 890 aa11.31□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 ZCWPW2Q504Y3 356 aa11.31□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 APLFQ8IW19 511 aaPredicted RBP11.31□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.31□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 C18orf8Q96DM3 657 aa11.31□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 SMARCAD1Q9H4L7 1026 aa11.31□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 TUT1Q9H6E5 874 aaKnown RBP11.31□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 POLIQ9UNA4 740 aa11.31□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 ATXN2Q99700 1313 aaKnown RBP11.31□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 FZD9O00144 591 aa11.31□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 DNM1LO00429 736 aa11.31□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 POLR2BP30876 1174 aaKnown RBP11.31□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 ERFP50548 548 aa11.31□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 CYP24A1Q07973 514 aa11.31□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 CCDC137Q6PK04 289 aaKnown RBP11.31□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 MAGEC3Q8TD91 643 aa11.31□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 RSAD2Q8WXG1 361 aa11.31□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 TGS1Q96RS0 853 aaKnown RBP11.31□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.31□□□□□ -0.66e-7■■□□□ 13.4
MSH5-SAPCD1-207ENST00000493662 GANQ9H2C0 597 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms