RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 PCDHB7Q9Y5E2 793 aa23.07■■□□□ 1.28
SMC4-221ENST00000489573 TACC1O75410 805 aa23.06■■□□□ 1.28
SMC4-221ENST00000489573 FTLP02792 175 aaPredicted RBP23.06■■□□□ 1.28
SMC4-221ENST00000489573 CYP1A1P04798 512 aaPredicted RBP23.06■■□□□ 1.28
SMC4-221ENST00000489573 FGFR1P11362 822 aa23.06■■□□□ 1.28
SMC4-221ENST00000489573 CD19P15391 556 aa23.06■■□□□ 1.28
SMC4-221ENST00000489573 PDZRN4Q6ZMN7 1036 aaPredicted RBP23.06■■□□□ 1.28
SMC4-221ENST00000489573 LIMS2Q7Z4I7 341 aa23.06■■□□□ 1.28
SMC4-221ENST00000489573 TOP6BLQ8N6T0 577 aa23.06■■□□□ 1.28
SMC4-221ENST00000489573 NT5C1AQ9BXI3 368 aa23.06■■□□□ 1.28
SMC4-221ENST00000489573 KANSL3Q9P2N6 904 aa23.06■■□□□ 1.28
SMC4-221ENST00000489573 ANKRD62A6NC57 917 aa23.06■■□□□ 1.28
SMC4-221ENST00000489573 MED7O43513 233 aa23.06■■□□□ 1.28
SMC4-221ENST00000489573 HUS1O60921 280 aa23.06■■□□□ 1.28
SMC4-221ENST00000489573 UNGP13051 313 aaPredicted RBP23.06■■□□□ 1.28
SMC4-221ENST00000489573 ORC1Q13415 861 aa23.06■■□□□ 1.28
SMC4-221ENST00000489573 UPP1Q16831 310 aa23.06■■□□□ 1.28
SMC4-221ENST00000489573 ACAD10Q6JQN1 1059 aa23.06■■□□□ 1.28
SMC4-221ENST00000489573 RNF10Q8N5U6 811 aaKnown RBP23.06■■□□□ 1.28
SMC4-221ENST00000489573 APPL2Q8NEU8 664 aa23.06■■□□□ 1.28
SMC4-221ENST00000489573 KIF18AQ8NI77 898 aa23.06■■□□□ 1.28
SMC4-221ENST00000489573 CTNNBL1Q8WYA6 563 aaPredicted RBP23.06■■□□□ 1.28
SMC4-221ENST00000489573 TFAP2BQ92481 460 aa23.06■■□□□ 1.28
SMC4-221ENST00000489573 WDR24Q96S15 920 aa23.06■■□□□ 1.28
SMC4-221ENST00000489573 ZSWIM1Q9BR11 485 aa23.06■■□□□ 1.28
SMC4-221ENST00000489573 PRDM5Q9NQX1 630 aaPredicted RBP23.06■■□□□ 1.28
SMC4-221ENST00000489573 LRFN2Q9ULH4 789 aa23.06■■□□□ 1.28
SMC4-221ENST00000489573 L1RE1Q9UN81 338 aa23.06■■□□□ 1.28
SMC4-221ENST00000489573 NCANO14594 1321 aa23.05■■□□□ 1.28
SMC4-221ENST00000489573 LOC101059915A0A1B0GWI6 518 aaPredicted RBP23.05■■□□□ 1.28
SMC4-221ENST00000489573 KIAA0355O15063 1070 aa23.05■■□□□ 1.28
SMC4-221ENST00000489573 CFHP08603 1231 aa23.05■■□□□ 1.28
SMC4-221ENST00000489573 CNKSR3Q6P9H4 555 aa23.05■■□□□ 1.28
SMC4-221ENST00000489573 DPH6Q7L8W6 267 aa23.05■■□□□ 1.28
SMC4-221ENST00000489573 UNC93AQ86WB7 457 aa23.05■■□□□ 1.28
SMC4-221ENST00000489573 SLC35F6Q8N357 371 aa23.05■■□□□ 1.28
SMC4-221ENST00000489573 RNF216Q9NWF9 866 aaPredicted RBP23.05■■□□□ 1.28
SMC4-221ENST00000489573 SALL4Q9UJQ4 1053 aa23.05■■□□□ 1.28
SMC4-221ENST00000489573 PCDHGC3Q9UN70 934 aa23.05■■□□□ 1.28
SMC4-221ENST00000489573 KIAA0100Q14667 2235 aaKnown RBP23.05■■□□□ 1.28
SMC4-221ENST00000489573 TDRD15B5MCY1 1934 aaKnown RBP23.04■■□□□ 1.28
SMC4-221ENST00000489573 A0A0A6YYK5 440 aaPredicted RBP23.04■■□□□ 1.28
SMC4-221ENST00000489573 CYB561D2O14569 222 aa23.04■■□□□ 1.28
SMC4-221ENST00000489573 MOCS3O95396 460 aa23.04■■□□□ 1.28
SMC4-221ENST00000489573 TIMP1P01033 207 aa23.04■■□□□ 1.28
SMC4-221ENST00000489573 FAM163BP0C2L3 166 aa23.04■■□□□ 1.28
SMC4-221ENST00000489573 VDRP11473 427 aa23.04■■□□□ 1.28
SMC4-221ENST00000489573 ABCB4P21439 1286 aa23.04■■□□□ 1.28
SMC4-221ENST00000489573 NAA35Q5VZE5 725 aa23.04■■□□□ 1.28
SMC4-221ENST00000489573 PPP1R2P3Q6NXS1 205 aa23.04■■□□□ 1.28
SMC4-221ENST00000489573 PASD1Q8IV76 773 aa23.04■■□□□ 1.28
SMC4-221ENST00000489573 ABI1Q8IZP0 508 aa23.04■■□□□ 1.28
SMC4-221ENST00000489573 C3orf58Q8NDZ4 430 aa23.04■■□□□ 1.28
SMC4-221ENST00000489573 OR6B3Q8NGW1 331 aa23.04■■□□□ 1.28
SMC4-221ENST00000489573 KBTBD7Q8WVZ9 684 aa23.04■■□□□ 1.28
SMC4-221ENST00000489573 CYFIP2Q96F07 1278 aa23.04■■□□□ 1.28
SMC4-221ENST00000489573 NOX5Q96PH1 765 aa23.04■■□□□ 1.28
SMC4-221ENST00000489573 PAAF1Q9BRP4 392 aa23.04■■□□□ 1.28
SMC4-221ENST00000489573 KIAA1257Q9ULG3 409 aa23.04■■□□□ 1.28
SMC4-221ENST00000489573 TET1Q8NFU7 2136 aa23.03■■□□□ 1.28
SMC4-221ENST00000489573 FAM170AA1A519 330 aa23.03■■□□□ 1.28
SMC4-221ENST00000489573 TRIM43BA6NCK2 446 aa23.03■■□□□ 1.28
SMC4-221ENST00000489573 HOXA2O43364 376 aa23.03■■□□□ 1.28
SMC4-221ENST00000489573 LSM8O95777 96 aaKnown RBP23.03■■□□□ 1.28
SMC4-221ENST00000489573 PAX3P23760 479 aa23.03■■□□□ 1.28
SMC4-221ENST00000489573 CASQ1P31415 396 aa23.03■■□□□ 1.28
SMC4-221ENST00000489573 SSTR3P32745 418 aaPredicted RBP23.03■■□□□ 1.28
SMC4-221ENST00000489573 AARSP49588 968 aaKnown RBP eCLIP23.03■■□□□ 1.283e-49■■■■■ 252.4
SMC4-221ENST00000489573 NOMO3P69849 1222 aa23.03■■□□□ 1.28
SMC4-221ENST00000489573 CENPCQ03188 943 aa23.03■■□□□ 1.28
SMC4-221ENST00000489573 UBE2Q1Q7Z7E8 422 aa23.03■■□□□ 1.28
SMC4-221ENST00000489573 ADGRF2Q8IZF7 708 aa23.03■■□□□ 1.28
SMC4-221ENST00000489573 TRIM43Q96BQ3 446 aaPredicted RBP23.03■■□□□ 1.28
SMC4-221ENST00000489573 SENP8Q96LD8 212 aa23.03■■□□□ 1.28
SMC4-221ENST00000489573 HEXIM2Q96MH2 286 aaKnown RBP23.03■■□□□ 1.28
SMC4-221ENST00000489573 ALS2CR12Q96Q35 445 aa23.03■■□□□ 1.28
SMC4-221ENST00000489573 THAP2Q9H0W7 228 aa23.03■■□□□ 1.28
SMC4-221ENST00000489573 SNX25Q9H3E2 840 aa23.03■■□□□ 1.28
SMC4-221ENST00000489573 TBC1D13Q9NVG8 400 aa23.03■■□□□ 1.28
SMC4-221ENST00000489573 FANCGO15287 622 aa23.02■■□□□ 1.28
SMC4-221ENST00000489573 BUB1O43683 1085 aa23.02■■□□□ 1.28
SMC4-221ENST00000489573 EN2P19622 333 aaPredicted RBP23.02■■□□□ 1.28
SMC4-221ENST00000489573 WARSP23381 471 aaKnown RBP23.02■■□□□ 1.28
SMC4-221ENST00000489573 IGFBP6P24592 240 aaPredicted RBP23.02■■□□□ 1.28
SMC4-221ENST00000489573 NSFP46459 744 aaKnown RBP23.02■■□□□ 1.28
SMC4-221ENST00000489573 NAP1L1P55209 391 aaKnown RBP23.02■■□□□ 1.28
SMC4-221ENST00000489573 DSC1Q08554 894 aa23.02■■□□□ 1.28
SMC4-221ENST00000489573 IKBKEQ14164 716 aa23.02■■□□□ 1.28
SMC4-221ENST00000489573 SGO2Q562F6 1265 aa23.02■■□□□ 1.28
SMC4-221ENST00000489573 DSTYKQ6XUX3 929 aa23.02■■□□□ 1.28
SMC4-221ENST00000489573 NPAS4Q8IUM7 802 aa23.02■■□□□ 1.28
SMC4-221ENST00000489573 PDCL2Q8N4E4 241 aa23.02■■□□□ 1.28
SMC4-221ENST00000489573 TRIM58Q8NG06 486 aa23.02■■□□□ 1.28
SMC4-221ENST00000489573 RFFLQ8WZ73 363 aa23.02■■□□□ 1.28
SMC4-221ENST00000489573 RABGGTAQ92696 567 aa23.02■■□□□ 1.28
SMC4-221ENST00000489573 DNAI2Q9GZS0 605 aa23.02■■□□□ 1.28
SMC4-221ENST00000489573 CEP83Q9Y592 693 aa23.02■■□□□ 1.28
SMC4-221ENST00000489573 CAPN6Q9Y6Q1 641 aa23.02■■□□□ 1.28
SMC4-221ENST00000489573 A8MXQ7 604 aa23.01■■□□□ 1.27
SMC4-221ENST00000489573 RAG1P15918 1043 aa23.01■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms