RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 NSUN7Q8NE18 718 aaKnown RBP4.59□□□□□ -1.67
SMC4-220ENST00000488017 POC1BQ8TC44 478 aa4.59□□□□□ -1.67
SMC4-220ENST00000488017 SREK1Q8WXA9 508 aaKnown RBP4.59□□□□□ -1.67
SMC4-220ENST00000488017 EBF3Q9H4W6 596 aa4.59□□□□□ -1.67
SMC4-220ENST00000488017 ANXA1P04083 346 aa4.58□□□□□ -1.68
SMC4-220ENST00000488017 SBK3P0C264 359 aa4.58□□□□□ -1.68
SMC4-220ENST00000488017 NHLRC4P0CG21 123 aaPredicted RBP4.58□□□□□ -1.68
SMC4-220ENST00000488017 MYCLP1P12525 358 aaPredicted RBP4.58□□□□□ -1.68
SMC4-220ENST00000488017 PCSK6P29122 969 aa4.58□□□□□ -1.68
SMC4-220ENST00000488017 WASP42768 502 aa4.58□□□□□ -1.68
SMC4-220ENST00000488017 TRIP6Q15654 476 aaKnown RBP4.58□□□□□ -1.68
SMC4-220ENST00000488017 ANKRD16Q6P6B7 361 aa4.58□□□□□ -1.68
SMC4-220ENST00000488017 SLC29A4Q7RTT9 530 aa4.58□□□□□ -1.68
SMC4-220ENST00000488017 GALNT16Q8N428 558 aa4.58□□□□□ -1.68
SMC4-220ENST00000488017 AOPEPQ8N6M6 819 aa4.58□□□□□ -1.68
SMC4-220ENST00000488017 SMOQ99835 787 aa4.58□□□□□ -1.68
SMC4-220ENST00000488017 TPSD1Q9BZJ3 242 aa4.58□□□□□ -1.68
SMC4-220ENST00000488017 IMPG2Q9BZV3 1241 aa4.58□□□□□ -1.68
SMC4-220ENST00000488017 ARHGEF3Q9NR81 526 aa4.58□□□□□ -1.68
SMC4-220ENST00000488017 F5H697 171 aa4.57□□□□□ -1.68
SMC4-220ENST00000488017 ADAMTS3O15072 1205 aa4.57□□□□□ -1.68
SMC4-220ENST00000488017 GPR3P46089 330 aa4.57□□□□□ -1.68
SMC4-220ENST00000488017 ZNF134P52741 427 aa4.57□□□□□ -1.68
SMC4-220ENST00000488017 AARS2Q5JTZ9 985 aaKnown RBP4.57□□□□□ -1.68
SMC4-220ENST00000488017 TEDDM1Q5T9Z0 273 aa4.57□□□□□ -1.68
SMC4-220ENST00000488017 CATSPERGQ6ZRH7 1159 aa4.57□□□□□ -1.68
SMC4-220ENST00000488017 KIAA0907Q7Z7F0 614 aaPredicted RBP4.57□□□□□ -1.68
SMC4-220ENST00000488017 RHOT1Q8IXI2 618 aa4.57□□□□□ -1.68
SMC4-220ENST00000488017 TMIEQ8NEW7 156 aa4.57□□□□□ -1.68
SMC4-220ENST00000488017 ATRIPQ8WXE1 791 aa4.57□□□□□ -1.68
SMC4-220ENST00000488017 TRIB1Q96RU8 372 aa4.57□□□□□ -1.68
SMC4-220ENST00000488017 AMBRA1Q9C0C7 1298 aa4.57□□□□□ -1.68
SMC4-220ENST00000488017 KAT6AQ92794 2004 aa4.56□□□□□ -1.68
SMC4-220ENST00000488017 IGKV2D-30A0A075B6S6 120 aa4.56□□□□□ -1.68
SMC4-220ENST00000488017 SMIM35A0A1B0GVV1 85 aa4.56□□□□□ -1.68
SMC4-220ENST00000488017 KCNU1A8MYU2 1149 aa4.56□□□□□ -1.68
SMC4-220ENST00000488017 ZNF213O14771 459 aa4.56□□□□□ -1.68
SMC4-220ENST00000488017 SOAT2O75908 522 aa4.56□□□□□ -1.68
SMC4-220ENST00000488017 DNAJB5O75953 348 aa4.56□□□□□ -1.68
SMC4-220ENST00000488017 KRT10P13645 584 aa4.56□□□□□ -1.68
SMC4-220ENST00000488017 JUPP14923 745 aa4.56□□□□□ -1.68
SMC4-220ENST00000488017 NDUFV1P49821 464 aa4.56□□□□□ -1.68
SMC4-220ENST00000488017 DAZAP2Q15038 168 aaPredicted RBP4.56□□□□□ -1.68
SMC4-220ENST00000488017 RABEP1Q15276 862 aa4.56□□□□□ -1.68
SMC4-220ENST00000488017 FLYWCH1Q4VC44 716 aa4.56□□□□□ -1.68
SMC4-220ENST00000488017 RSPH3Q86UC2 560 aa4.56□□□□□ -1.68
SMC4-220ENST00000488017 FANCBQ8NB91 859 aa4.56□□□□□ -1.68
SMC4-220ENST00000488017 SLC17A8Q8NDX2 589 aa4.56□□□□□ -1.68
SMC4-220ENST00000488017 ADAMTS15Q8TE58 950 aa4.56□□□□□ -1.68
SMC4-220ENST00000488017 SSH1Q8WYL5 1049 aa4.56□□□□□ -1.68
SMC4-220ENST00000488017 TMX3Q96JJ7 454 aa4.56□□□□□ -1.68
SMC4-220ENST00000488017 PIF1Q9H611 641 aa4.56□□□□□ -1.68
SMC4-220ENST00000488017 CCM2LQ9NUG4 571 aaPredicted RBP4.56□□□□□ -1.68
SMC4-220ENST00000488017 TDP1Q9NUW8 608 aa4.56□□□□□ -1.68
SMC4-220ENST00000488017 DKK3Q9UBP4 350 aa4.56□□□□□ -1.68
SMC4-220ENST00000488017 SMIM22K7EJ46 135 aa4.55□□□□□ -1.68
SMC4-220ENST00000488017 SOCS2O14508 198 aa4.55□□□□□ -1.68
SMC4-220ENST00000488017 BRINP1O60477 761 aa4.55□□□□□ -1.68
SMC4-220ENST00000488017 OSMP13725 252 aa4.55□□□□□ -1.68
SMC4-220ENST00000488017 CDC42EP1Q00587 391 aa4.55□□□□□ -1.68
SMC4-220ENST00000488017 TARDBPQ13148 414 aaKnown RBP eCLIP4.55□□□□□ -1.68
SMC4-220ENST00000488017 TBCCQ15814 346 aa4.55□□□□□ -1.68
SMC4-220ENST00000488017 RNF180Q86T96 592 aa4.55□□□□□ -1.68
SMC4-220ENST00000488017 SMRP1Q8NCR6 262 aa4.55□□□□□ -1.68
SMC4-220ENST00000488017 IFI44Q8TCB0 444 aa4.55□□□□□ -1.68
SMC4-220ENST00000488017 PIGOQ8TEQ8 1089 aa4.55□□□□□ -1.68
SMC4-220ENST00000488017 DPF2Q92785 391 aa4.55□□□□□ -1.68
SMC4-220ENST00000488017 ACTRT3Q9BYD9 372 aa4.55□□□□□ -1.68
SMC4-220ENST00000488017 GPR45Q9Y5Y3 372 aa4.55□□□□□ -1.68
SMC4-220ENST00000488017 CCDC187A0A096LP49 1063 aa4.54□□□□□ -1.68
SMC4-220ENST00000488017 ALDH9A1P49189 494 aa4.54□□□□□ -1.68
SMC4-220ENST00000488017 STRN3Q13033 797 aa4.54□□□□□ -1.68
SMC4-220ENST00000488017 TWIST1Q15672 202 aa4.54□□□□□ -1.68
SMC4-220ENST00000488017 ZNF618Q5T7W0 954 aa4.54□□□□□ -1.68
SMC4-220ENST00000488017 MRPL10Q7Z7H8 261 aaKnown RBP4.54□□□□□ -1.68
SMC4-220ENST00000488017 ABCF1Q8NE71 845 aaKnown RBP eCLIP4.54□□□□□ -1.68
SMC4-220ENST00000488017 NSMCE1Q8WV22 266 aa4.54□□□□□ -1.68
SMC4-220ENST00000488017 NRG4Q8WWG1 115 aa4.54□□□□□ -1.68
SMC4-220ENST00000488017 MARK4Q96L34 752 aa4.54□□□□□ -1.68
SMC4-220ENST00000488017 VTA1Q9NP79 307 aa4.54□□□□□ -1.68
SMC4-220ENST00000488017 C14orf119Q9NWQ9 140 aa4.54□□□□□ -1.68
SMC4-220ENST00000488017 INTUQ9ULD6 942 aa4.54□□□□□ -1.68
SMC4-220ENST00000488017 SLC45A2Q9UMX9 530 aa4.54□□□□□ -1.68
SMC4-220ENST00000488017 AFG3L2Q9Y4W6 797 aa4.54□□□□□ -1.68
SMC4-220ENST00000488017 E9PLN8 166 aa4.53□□□□□ -1.68
SMC4-220ENST00000488017 POLRMTO00411 1230 aaKnown RBP4.53□□□□□ -1.68
SMC4-220ENST00000488017 SGTAO43765 313 aa4.53□□□□□ -1.68
SMC4-220ENST00000488017 LPOP22079 712 aaPredicted RBP4.53□□□□□ -1.68
SMC4-220ENST00000488017 LINC00205P59089 165 aa4.53□□□□□ -1.68
SMC4-220ENST00000488017 KIAA1161Q6NSJ0 714 aa4.53□□□□□ -1.68
SMC4-220ENST00000488017 MEPCEQ7L2J0 689 aaKnown RBP4.53□□□□□ -1.68
SMC4-220ENST00000488017 MIGA2Q7L4E1 593 aa4.53□□□□□ -1.68
SMC4-220ENST00000488017 WDR53Q7Z5U6 358 aaPredicted RBP4.53□□□□□ -1.68
SMC4-220ENST00000488017 C8orf58Q8NAV2 365 aa4.53□□□□□ -1.68
SMC4-220ENST00000488017 PRSS3P2Q8NHM4 247 aa4.53□□□□□ -1.68
SMC4-220ENST00000488017 FBXO41Q8TF61 875 aa4.53□□□□□ -1.68
SMC4-220ENST00000488017 SCAMP4Q969E2 229 aa4.53□□□□□ -1.68
SMC4-220ENST00000488017 AHCYL2Q96HN2 611 aaKnown RBP4.53□□□□□ -1.68
SMC4-220ENST00000488017 NELL2Q99435 816 aa4.53□□□□□ -1.68
SMC4-220ENST00000488017 VKORC1Q9BQB6 163 aa4.53□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms