RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 EMSYQ7Z589 1322 aa6.56□□□□□ -1.36
VPS13D-209ENST00000487188 IQANK1A0A1B0GTG1 560 aa6.56□□□□□ -1.36
VPS13D-209ENST00000487188 COPEO14579 308 aa6.56□□□□□ -1.36
VPS13D-209ENST00000487188 TM9SF1O15321 606 aa6.56□□□□□ -1.36
VPS13D-209ENST00000487188 CYP26A1O43174 497 aa6.56□□□□□ -1.36
VPS13D-209ENST00000487188 E2F6O75461 281 aa6.56□□□□□ -1.36
VPS13D-209ENST00000487188 CAMTA2O94983 1202 aa6.56□□□□□ -1.36
VPS13D-209ENST00000487188 CRABP2P29373 138 aa6.56□□□□□ -1.36
VPS13D-209ENST00000487188 IL6STP40189 918 aaPredicted RBP6.56□□□□□ -1.36
VPS13D-209ENST00000487188 GCLMP48507 274 aa6.56□□□□□ -1.36
VPS13D-209ENST00000487188 AQP4P55087 323 aa6.56□□□□□ -1.36
VPS13D-209ENST00000487188 GSTO1P78417 241 aa6.56□□□□□ -1.36
VPS13D-209ENST00000487188 ATG16L1Q676U5 607 aa6.56□□□□□ -1.36
VPS13D-209ENST00000487188 GADD45GIP1Q8TAE8 222 aaPredicted RBP6.56□□□□□ -1.36
VPS13D-209ENST00000487188 PRR11Q96HE9 360 aaPredicted RBP6.56□□□□□ -1.36
VPS13D-209ENST00000487188 ZFRQ96KR1 1074 aaKnown RBP6.56□□□□□ -1.36
VPS13D-209ENST00000487188 CNBD2Q96M20 576 aa6.56□□□□□ -1.36
VPS13D-209ENST00000487188 LRGUKQ96M69 825 aa6.56□□□□□ -1.36
VPS13D-209ENST00000487188 GCNAQ96QF7 691 aa6.56□□□□□ -1.36
VPS13D-209ENST00000487188 MAK16Q9BXY0 300 aaKnown RBP6.56□□□□□ -1.36
VPS13D-209ENST00000487188 C12orf65Q9H3J6 166 aaKnown RBP6.56□□□□□ -1.36
VPS13D-209ENST00000487188 PCIF1Q9H4Z3 704 aa6.56□□□□□ -1.36
VPS13D-209ENST00000487188 QTRT2Q9H974 415 aaKnown RBP6.56□□□□□ -1.36
VPS13D-209ENST00000487188 IFT122Q9HBG6 1241 aa6.56□□□□□ -1.36
VPS13D-209ENST00000487188 GPAMQ9HCL2 828 aa6.56□□□□□ -1.36
VPS13D-209ENST00000487188 USP21Q9UK80 565 aa6.56□□□□□ -1.36
VPS13D-209ENST00000487188 APPL1Q9UKG1 709 aa6.56□□□□□ -1.36
VPS13D-209ENST00000487188 TDRKHQ9Y2W6 561 aaKnown RBP6.56□□□□□ -1.36
VPS13D-209ENST00000487188 PCDHA2Q9Y5H9 948 aa6.56□□□□□ -1.36
VPS13D-209ENST00000487188 ONECUT3O60422 494 aaPredicted RBP6.55□□□□□ -1.36
VPS13D-209ENST00000487188 TM7SF2O76062 418 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 SGPL1O95470 568 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 VCLP18206 1134 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 EIF4BP23588 611 aaKnown RBP6.55□□□□□ -1.36
VPS13D-209ENST00000487188 PMLP29590 882 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 SLC1A1P43005 524 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 MXI1P50539 228 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 HADHBP55084 474 aaKnown RBP6.55□□□□□ -1.36
VPS13D-209ENST00000487188 MTTPP55157 894 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 ZNF200P98182 395 aaPredicted RBP6.55□□□□□ -1.36
VPS13D-209ENST00000487188 KCNA1Q09470 495 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 PARP10Q53GL7 1025 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 ASPRV1Q53RT3 343 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 LIN9Q5TKA1 542 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 IYDQ6PHW0 289 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 CLEC4GQ6UXB4 293 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 DENND1AQ8TEH3 1009 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 ABHD8Q96I13 439 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 PFDN4Q9NQP4 134 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 RAB20Q9NX57 234 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 GRID1Q9ULK0 1009 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 ROBO3Q96MS0 1386 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 BCORQ6W2J9 1755 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 FAM237BA0A1B0GVD1 139 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 CD58P19256 250 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 PEX2P28328 305 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 RAP1GDS1P52306 607 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 MFAP3P55082 362 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 ACTR3P61158 418 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 YWHAGP61981 247 aaKnown RBP eCLIP6.55□□□□□ -1.36
VPS13D-209ENST00000487188 MAP3K10Q02779 954 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 HIF1AQ16665 826 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 SH3D19Q5HYK7 790 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 ODR4Q5SWX8 454 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 OLFML1Q6UWY5 402 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 TPH2Q8IWU9 490 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 ZC3H3Q8IXZ2 948 aaKnown RBP6.55□□□□□ -1.36
VPS13D-209ENST00000487188 ARL10Q8N8L6 244 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 GSTCDQ8NEC7 633 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 HAS1Q92839 578 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 CEP95Q96GE4 821 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 PHF12Q96QT6 1004 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 PANX3Q96QZ0 392 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 PAFAH2Q99487 392 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 PARVGQ9HBI0 331 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 S100A14Q9HCY8 104 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 SLC17A7Q9P2U7 560 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 ZNF180Q9UJW8 692 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 DMTF1Q9Y222 760 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 R3HDM2Q9Y2K5 976 aaKnown RBP6.55□□□□□ -1.36
VPS13D-209ENST00000487188 RBM47A0AV96 593 aaKnown RBP6.55□□□□□ -1.36
VPS13D-209ENST00000487188 TPD52L2O43399 206 aaKnown RBP6.55□□□□□ -1.36
VPS13D-209ENST00000487188 ZNF862O60290 1169 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 STAMBPO95630 424 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 KRT1P04264 644 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 YY1P25490 414 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 CDK8P49336 464 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 HIRAP54198 1017 aaPredicted RBP6.55□□□□□ -1.36
VPS13D-209ENST00000487188 SLC12A3P55017 1021 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 NCKAP1LP55160 1127 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 ARHGAP4P98171 946 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 TMEM62Q0P6H9 643 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 LPIN1Q14693 890 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 CYTH1Q15438 398 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 RARS2Q5T160 578 aaKnown RBP6.55□□□□□ -1.36
VPS13D-209ENST00000487188 KLHDC10Q6PID8 442 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 NCCRP1Q6ZVX7 275 aaPredicted RBP6.55□□□□□ -1.36
VPS13D-209ENST00000487188 ZNF804AQ7Z570 1209 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 DDI1Q8WTU0 396 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 SLCO2A1Q92959 643 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms