RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 TMEM206Q9H813 350 aa15.23■□□□□ 0.03
UPF3A-204ENST00000475218 TMLHEQ9NVH6 421 aa15.23■□□□□ 0.03
UPF3A-204ENST00000475218 RCOR1Q9UKL0 485 aa15.23■□□□□ 0.03
UPF3A-204ENST00000475218 MTF2Q9Y483 593 aaPredicted RBP15.23■□□□□ 0.03
UPF3A-204ENST00000475218 KPNA7A9QM74 516 aa15.22■□□□□ 0.03
UPF3A-204ENST00000475218 ZNF197O14709 1029 aa15.22■□□□□ 0.03
UPF3A-204ENST00000475218 ITGB3P05106 788 aa15.22■□□□□ 0.03
UPF3A-204ENST00000475218 ATF6P18850 670 aa15.22■□□□□ 0.03
UPF3A-204ENST00000475218 POLR2BP30876 1174 aaKnown RBP15.22■□□□□ 0.03
UPF3A-204ENST00000475218 ASIC1P78348 528 aa15.22■□□□□ 0.03
UPF3A-204ENST00000475218 TFAMQ00059 246 aaKnown RBP15.22■□□□□ 0.03
UPF3A-204ENST00000475218 TEAD2Q15562 447 aa15.22■□□□□ 0.03
UPF3A-204ENST00000475218 SLC39A12Q504Y0 691 aa15.22■□□□□ 0.03
UPF3A-204ENST00000475218 GAREM2Q75VX8 874 aa15.22■□□□□ 0.03
UPF3A-204ENST00000475218 CBWD2Q8IUF1 395 aa15.22■□□□□ 0.03
UPF3A-204ENST00000475218 PJA1Q8NG27 643 aa15.22■□□□□ 0.03
UPF3A-204ENST00000475218 ZNF507Q8TCN5 953 aa15.22■□□□□ 0.03
UPF3A-204ENST00000475218 KCNG4Q8TDN1 519 aa15.22■□□□□ 0.03
UPF3A-204ENST00000475218 BLZF1Q9H2G9 400 aa15.22■□□□□ 0.03
UPF3A-204ENST00000475218 PROB1E7EW31 1015 aa15.21■□□□□ 0.03
UPF3A-204ENST00000475218 VIPR2P41587 438 aa15.21■□□□□ 0.03
UPF3A-204ENST00000475218 MLF2Q15773 248 aaPredicted RBP15.21■□□□□ 0.03
UPF3A-204ENST00000475218 CCDC142Q17RM4 750 aa15.21■□□□□ 0.03
UPF3A-204ENST00000475218 SLC44A4Q53GD3 710 aa15.21■□□□□ 0.03
UPF3A-204ENST00000475218 STXBP5Q5T5C0 1151 aa15.21■□□□□ 0.03
UPF3A-204ENST00000475218 CYP4A22Q5TCH4 519 aa15.21■□□□□ 0.03
UPF3A-204ENST00000475218 LMBRD2Q68DH5 695 aaPredicted RBP15.21■□□□□ 0.03
UPF3A-204ENST00000475218 IQCEQ6IPM2 695 aa15.21■□□□□ 0.03
UPF3A-204ENST00000475218 ARMCX5Q6P1M9 558 aa15.21■□□□□ 0.03
UPF3A-204ENST00000475218 VITQ6UXI7 678 aa15.21■□□□□ 0.03
UPF3A-204ENST00000475218 GRAMD1CQ8IYS0 662 aa15.21■□□□□ 0.03
UPF3A-204ENST00000475218 GPD1LQ8N335 351 aa15.21■□□□□ 0.03
UPF3A-204ENST00000475218 PDCL2Q8N4E4 241 aa15.21■□□□□ 0.03
UPF3A-204ENST00000475218 OR5B17Q8NGF7 314 aa15.21■□□□□ 0.03
UPF3A-204ENST00000475218 SCFD1Q8WVM8 642 aa15.21■□□□□ 0.03
UPF3A-204ENST00000475218 MTMR12Q9C0I1 747 aa15.21■□□□□ 0.03
UPF3A-204ENST00000475218 GZF1Q9H116 711 aaPredicted RBP15.21■□□□□ 0.03
UPF3A-204ENST00000475218 ASAH2Q9NR71 780 aa15.21■□□□□ 0.03
UPF3A-204ENST00000475218 L1RE1Q9UN81 338 aa15.21■□□□□ 0.03
UPF3A-204ENST00000475218 AGAP1Q9UPQ3 857 aa15.21■□□□□ 0.03
UPF3A-204ENST00000475218 MIA3Q5JRA6 1907 aa15.21■□□□□ 0.03
UPF3A-204ENST00000475218 EIF3DO15371 548 aaKnown RBP eCLIP15.21■□□□□ 0.02
UPF3A-204ENST00000475218 HCRTO43612 131 aa15.21■□□□□ 0.02
UPF3A-204ENST00000475218 LDHAP00338 332 aaKnown RBP15.21■□□□□ 0.02
UPF3A-204ENST00000475218 HSP90AA1P07900 732 aaKnown RBP15.21■□□□□ 0.02
UPF3A-204ENST00000475218 CD72P21854 359 aa15.21■□□□□ 0.02
UPF3A-204ENST00000475218 NBL1P41271 181 aa15.21■□□□□ 0.02
UPF3A-204ENST00000475218 ME1P48163 572 aa15.21■□□□□ 0.02
UPF3A-204ENST00000475218 CUL4BQ13620 913 aa15.21■□□□□ 0.02
UPF3A-204ENST00000475218 GRM2Q14416 872 aa15.21■□□□□ 0.02
UPF3A-204ENST00000475218 ANGPT1Q15389 498 aa15.21■□□□□ 0.02
UPF3A-204ENST00000475218 SV2CQ496J9 727 aa15.21■□□□□ 0.02
UPF3A-204ENST00000475218 FAM26FQ5R3K3 315 aa15.21■□□□□ 0.02
UPF3A-204ENST00000475218 UNC13DQ70J99 1090 aa15.21■□□□□ 0.02
UPF3A-204ENST00000475218 DNAJB7Q7Z6W7 309 aaPredicted RBP15.21■□□□□ 0.02
UPF3A-204ENST00000475218 PSMG2Q969U7 264 aa15.21■□□□□ 0.02
UPF3A-204ENST00000475218 PKMYT1Q99640 499 aa15.21■□□□□ 0.02
UPF3A-204ENST00000475218 LPIN3Q9BQK8 851 aa15.21■□□□□ 0.02
UPF3A-204ENST00000475218 TRPV4Q9HBA0 871 aa15.21■□□□□ 0.02
UPF3A-204ENST00000475218 HSPBP1Q9NZL4 362 aa15.21■□□□□ 0.02
UPF3A-204ENST00000475218 HSFX1Q9UBD0 423 aa15.21■□□□□ 0.02
UPF3A-204ENST00000475218 DSEQ9UL01 958 aa15.21■□□□□ 0.02
UPF3A-204ENST00000475218 SIT1Q9Y3P8 196 aa15.21■□□□□ 0.02
UPF3A-204ENST00000475218 TICRRQ7Z2Z1 1910 aa15.2■□□□□ 0.02
UPF3A-204ENST00000475218 PATJQ8NI35 1801 aa15.2■□□□□ 0.02
UPF3A-204ENST00000475218 A0A1W2PRU2 124 aa15.2■□□□□ 0.02
UPF3A-204ENST00000475218 STK25O00506 426 aa15.2■□□□□ 0.02
UPF3A-204ENST00000475218 ACTN4O43707 911 aaKnown RBP15.2■□□□□ 0.02
UPF3A-204ENST00000475218 PDIA4P13667 645 aaKnown RBP15.2■□□□□ 0.02
UPF3A-204ENST00000475218 ATL3Q6DD88 541 aa15.2■□□□□ 0.02
UPF3A-204ENST00000475218 ASCL5Q7RTU5 278 aa15.2■□□□□ 0.02
UPF3A-204ENST00000475218 OSTM1Q86WC4 334 aa15.2■□□□□ 0.02
UPF3A-204ENST00000475218 ZNF687Q8N1G0 1237 aa15.2■□□□□ 0.02
UPF3A-204ENST00000475218 ELMOD1Q8N336 334 aa15.2■□□□□ 0.02
UPF3A-204ENST00000475218 LEMD2Q8NC56 503 aa15.2■□□□□ 0.02
UPF3A-204ENST00000475218 ZSCAN18Q8TBC5 510 aaPredicted RBP15.2■□□□□ 0.02
UPF3A-204ENST00000475218 SMARCD2Q92925 531 aa15.2■□□□□ 0.02
UPF3A-204ENST00000475218 LRRC3BQ96PB8 259 aa15.2■□□□□ 0.02
UPF3A-204ENST00000475218 LRRC27Q9C0I9 530 aa15.2■□□□□ 0.02
UPF3A-204ENST00000475218 IL21Q9HBE4 155 aa15.2■□□□□ 0.02
UPF3A-204ENST00000475218 AGPAT3Q9NRZ7 376 aa15.2■□□□□ 0.02
UPF3A-204ENST00000475218 CACNA1IQ9P0X4 2223 aa15.19■□□□□ 0.02
UPF3A-204ENST00000475218 ARNTLO00327 626 aa15.19■□□□□ 0.02
UPF3A-204ENST00000475218 KLRC4O43908 158 aa15.19■□□□□ 0.02
UPF3A-204ENST00000475218 EPHB3P54753 998 aa15.19■□□□□ 0.02
UPF3A-204ENST00000475218 FZD5Q13467 585 aa15.19■□□□□ 0.02
UPF3A-204ENST00000475218 LIMS2Q7Z4I7 341 aa15.19■□□□□ 0.02
UPF3A-204ENST00000475218 MAML2Q8IZL2 1156 aaPredicted RBP15.19■□□□□ 0.02
UPF3A-204ENST00000475218 CSGALNACT2Q8N6G5 542 aa15.19■□□□□ 0.02
UPF3A-204ENST00000475218 LRRC52Q8N7C0 313 aa15.19■□□□□ 0.02
UPF3A-204ENST00000475218 ZNF560Q96MR9 790 aa15.19■□□□□ 0.02
UPF3A-204ENST00000475218 IRF2BPLQ9H1B7 796 aa15.19■□□□□ 0.02
UPF3A-204ENST00000475218 MAGEF1Q9HAY2 307 aa15.19■□□□□ 0.02
UPF3A-204ENST00000475218 ZFP14Q9HCL3 533 aa15.19■□□□□ 0.02
UPF3A-204ENST00000475218 INTS13Q9NVM9 706 aa15.19■□□□□ 0.02
UPF3A-204ENST00000475218 GDAP2Q9NXN4 497 aa15.19■□□□□ 0.02
UPF3A-204ENST00000475218 ITGA11Q9UKX5 1188 aa15.19■□□□□ 0.02
UPF3A-204ENST00000475218 DENND4CQ5VZ89 1909 aa15.19■□□□□ 0.02
UPF3A-204ENST00000475218 OBSL1O75147 1896 aa15.19■□□□□ 0.02
UPF3A-204ENST00000475218 NUP210Q8TEM1 1887 aaPredicted RBP15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms