RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 MTF2Q9Y483 593 aaPredicted RBP20.05■□□□□ 0.8
COL7A1-209ENST00000474432 PTPRJQ12913 1337 aa20.04■□□□□ 0.8
COL7A1-209ENST00000474432 LDHAP00338 332 aaKnown RBP20.04■□□□□ 0.8
COL7A1-209ENST00000474432 PDIA4P13667 645 aaKnown RBP20.04■□□□□ 0.8
COL7A1-209ENST00000474432 CASP1P29466 404 aa20.04■□□□□ 0.8
COL7A1-209ENST00000474432 POLR2BP30876 1174 aaKnown RBP20.04■□□□□ 0.8
COL7A1-209ENST00000474432 TFAMQ00059 246 aaKnown RBP20.04■□□□□ 0.8
COL7A1-209ENST00000474432 TEAD2Q15562 447 aa20.04■□□□□ 0.8
COL7A1-209ENST00000474432 MLF2Q15773 248 aaPredicted RBP20.04■□□□□ 0.8
COL7A1-209ENST00000474432 IQUBQ8NA54 791 aa20.04■□□□□ 0.8
COL7A1-209ENST00000474432 ZNF507Q8TCN5 953 aa20.04■□□□□ 0.8
COL7A1-209ENST00000474432 RSPRY1Q96DX4 576 aa20.04■□□□□ 0.8
COL7A1-209ENST00000474432 MKNK1Q9BUB5 465 aa20.04■□□□□ 0.8
COL7A1-209ENST00000474432 TRPV4Q9HBA0 871 aa20.04■□□□□ 0.8
COL7A1-209ENST00000474432 SIX4Q9UIU6 781 aa20.04■□□□□ 0.8
COL7A1-209ENST00000474432 DSEQ9UL01 958 aa20.04■□□□□ 0.8
COL7A1-209ENST00000474432 RIF1Q5UIP0 2472 aaKnown RBP20.04■□□□□ 0.8
COL7A1-209ENST00000474432 F5P12259 2224 aa20.03■□□□□ 0.8
COL7A1-209ENST00000474432 VPS13AQ96RL7 3174 aa20.03■□□□□ 0.8
COL7A1-209ENST00000474432 KANSL1LA0AUZ9 987 aa20.03■□□□□ 0.8
COL7A1-209ENST00000474432 POLR2DO15514 142 aaKnown RBP20.03■□□□□ 0.8
COL7A1-209ENST00000474432 TGFB1I1O43294 461 aa20.03■□□□□ 0.8
COL7A1-209ENST00000474432 ITGB3P05106 788 aa20.03■□□□□ 0.8
COL7A1-209ENST00000474432 ATF6P18850 670 aa20.03■□□□□ 0.8
COL7A1-209ENST00000474432 VIPR2P41587 438 aa20.03■□□□□ 0.8
COL7A1-209ENST00000474432 PRKCQQ04759 706 aa20.03■□□□□ 0.8
COL7A1-209ENST00000474432 DNM1Q05193 864 aaKnown RBP20.03■□□□□ 0.8
COL7A1-209ENST00000474432 GRM2Q14416 872 aa20.03■□□□□ 0.8
COL7A1-209ENST00000474432 SLC39A12Q504Y0 691 aa20.03■□□□□ 0.8
COL7A1-209ENST00000474432 RESP18Q5W5W9 173 aa20.03■□□□□ 0.8
COL7A1-209ENST00000474432 ARMCX5Q6P1M9 558 aa20.03■□□□□ 0.8
COL7A1-209ENST00000474432 VITQ6UXI7 678 aa20.03■□□□□ 0.8
COL7A1-209ENST00000474432 GAREM2Q75VX8 874 aa20.03■□□□□ 0.8
COL7A1-209ENST00000474432 DNAJB7Q7Z6W7 309 aaPredicted RBP20.03■□□□□ 0.8
COL7A1-209ENST00000474432 GPD1LQ8N335 351 aa20.03■□□□□ 0.8
COL7A1-209ENST00000474432 SPRYD3Q8NCJ5 442 aa20.03■□□□□ 0.8
COL7A1-209ENST00000474432 KCNG4Q8TDN1 519 aa20.03■□□□□ 0.8
COL7A1-209ENST00000474432 SMARCD2Q92925 531 aa20.03■□□□□ 0.8
COL7A1-209ENST00000474432 LRRC27Q9C0I9 530 aa20.03■□□□□ 0.8
COL7A1-209ENST00000474432 ZFP14Q9HCL3 533 aa20.03■□□□□ 0.8
COL7A1-209ENST00000474432 TMLHEQ9NVH6 421 aa20.03■□□□□ 0.8
COL7A1-209ENST00000474432 RCOR1Q9UKL0 485 aa20.03■□□□□ 0.8
COL7A1-209ENST00000474432 AGAP1Q9UPQ3 857 aa20.03■□□□□ 0.8
COL7A1-209ENST00000474432 PATJQ8NI35 1801 aa20.02■□□□□ 0.8
COL7A1-209ENST00000474432 A0A1W2PRU2 124 aa20.02■□□□□ 0.8
COL7A1-209ENST00000474432 CD72P21854 359 aa20.02■□□□□ 0.8
COL7A1-209ENST00000474432 EPHB3P54753 998 aa20.02■□□□□ 0.8
COL7A1-209ENST00000474432 ASIC1P78348 528 aa20.02■□□□□ 0.8
COL7A1-209ENST00000474432 PFKPQ01813 784 aa20.02■□□□□ 0.8
COL7A1-209ENST00000474432 PLD1Q13393 1074 aa20.02■□□□□ 0.8
COL7A1-209ENST00000474432 SV2CQ496J9 727 aa20.02■□□□□ 0.8
COL7A1-209ENST00000474432 STXBP5Q5T5C0 1151 aa20.02■□□□□ 0.8
COL7A1-209ENST00000474432 ASCL5Q7RTU5 278 aa20.02■□□□□ 0.8
COL7A1-209ENST00000474432 FRMD5Q7Z6J6 570 aa20.02■□□□□ 0.8
COL7A1-209ENST00000474432 CBWD2Q8IUF1 395 aa20.02■□□□□ 0.8
COL7A1-209ENST00000474432 OR5B17Q8NGF7 314 aa20.02■□□□□ 0.8
COL7A1-209ENST00000474432 ZSCAN18Q8TBC5 510 aaPredicted RBP20.02■□□□□ 0.8
COL7A1-209ENST00000474432 PSMG2Q969U7 264 aa20.02■□□□□ 0.8
COL7A1-209ENST00000474432 SHDQ96IW2 340 aa20.02■□□□□ 0.8
COL7A1-209ENST00000474432 L1RE1Q9UN81 338 aa20.02■□□□□ 0.8
COL7A1-209ENST00000474432 ZDHHC9Q9Y397 364 aa20.02■□□□□ 0.8
COL7A1-209ENST00000474432 ASB3Q9Y575 518 aa20.02■□□□□ 0.8
COL7A1-209ENST00000474432 FANCMQ8IYD8 2048 aa20.02■□□□□ 0.79
COL7A1-209ENST00000474432 DENND4CQ5VZ89 1909 aa20.02■□□□□ 0.79
COL7A1-209ENST00000474432 TICRRQ7Z2Z1 1910 aa20.02■□□□□ 0.79
COL7A1-209ENST00000474432 EIF3DO15371 548 aaKnown RBP eCLIP20.01■□□□□ 0.79
COL7A1-209ENST00000474432 GFRA3O60609 400 aa20.01■□□□□ 0.79
COL7A1-209ENST00000474432 PNPLA4P41247 253 aa20.01■□□□□ 0.79
COL7A1-209ENST00000474432 ALDH1A3P47895 512 aa20.01■□□□□ 0.79
COL7A1-209ENST00000474432 FZD5Q13467 585 aa20.01■□□□□ 0.79
COL7A1-209ENST00000474432 FAM26FQ5R3K3 315 aa20.01■□□□□ 0.79
COL7A1-209ENST00000474432 LMBRD2Q68DH5 695 aaPredicted RBP20.01■□□□□ 0.79
COL7A1-209ENST00000474432 ATL3Q6DD88 541 aa20.01■□□□□ 0.79
COL7A1-209ENST00000474432 UNC13DQ70J99 1090 aa20.01■□□□□ 0.79
COL7A1-209ENST00000474432 METTL23Q86XA0 190 aa20.01■□□□□ 0.79
COL7A1-209ENST00000474432 MAML2Q8IZL2 1156 aaPredicted RBP20.01■□□□□ 0.79
COL7A1-209ENST00000474432 ZNF687Q8N1G0 1237 aa20.01■□□□□ 0.79
COL7A1-209ENST00000474432 PDCL2Q8N4E4 241 aa20.01■□□□□ 0.79
COL7A1-209ENST00000474432 LRRC52Q8N7C0 313 aa20.01■□□□□ 0.79
COL7A1-209ENST00000474432 SCFD1Q8WVM8 642 aa20.01■□□□□ 0.79
COL7A1-209ENST00000474432 CHAMP1Q96JM3 812 aa20.01■□□□□ 0.79
COL7A1-209ENST00000474432 ZNF560Q96MR9 790 aa20.01■□□□□ 0.79
COL7A1-209ENST00000474432 LPIN3Q9BQK8 851 aa20.01■□□□□ 0.79
COL7A1-209ENST00000474432 MTMR12Q9C0I1 747 aa20.01■□□□□ 0.79
COL7A1-209ENST00000474432 BLZF1Q9H2G9 400 aa20.01■□□□□ 0.79
COL7A1-209ENST00000474432 IL21Q9HBE4 155 aa20.01■□□□□ 0.79
COL7A1-209ENST00000474432 HEBP1Q9NRV9 189 aa20.01■□□□□ 0.79
COL7A1-209ENST00000474432 INTS13Q9NVM9 706 aa20.01■□□□□ 0.79
COL7A1-209ENST00000474432 NUP210Q8TEM1 1887 aaPredicted RBP20.01■□□□□ 0.79
COL7A1-209ENST00000474432 FAM186AA6NE01 2351 aa20■□□□□ 0.79
COL7A1-209ENST00000474432 KIAA0391O15091 583 aaKnown RBP20■□□□□ 0.79
COL7A1-209ENST00000474432 HAPLN1P10915 354 aaPredicted RBP20■□□□□ 0.79
COL7A1-209ENST00000474432 RFX1P22670 979 aa20■□□□□ 0.79
COL7A1-209ENST00000474432 AMPD3Q01432 767 aa20■□□□□ 0.79
COL7A1-209ENST00000474432 LIMS2Q7Z4I7 341 aa20■□□□□ 0.79
COL7A1-209ENST00000474432 OSTM1Q86WC4 334 aa20■□□□□ 0.79
COL7A1-209ENST00000474432 THEM5Q8N1Q8 247 aa20■□□□□ 0.79
COL7A1-209ENST00000474432 CSGALNACT2Q8N6G5 542 aa20■□□□□ 0.79
COL7A1-209ENST00000474432 CACTINQ8WUQ7 758 aaKnown RBP20■□□□□ 0.79
COL7A1-209ENST00000474432 DNASE1L2Q92874 299 aa20■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms