RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 EXOC7Q9UPT5 735 aa20.31■□□□□ 0.84
CCDC88B-206ENST00000473405 R4GN57 208 aa20.31■□□□□ 0.84
CCDC88B-206ENST00000473405 GPR179Q6PRD1 2367 aa20.31■□□□□ 0.84
CCDC88B-206ENST00000473405 FAM170BA6NMN3 283 aa20.3■□□□□ 0.84
CCDC88B-206ENST00000473405 CYB561D2O14569 222 aa20.3■□□□□ 0.84
CCDC88B-206ENST00000473405 SP9P0CG40 484 aa20.3■□□□□ 0.84
CCDC88B-206ENST00000473405 TARSP26639 723 aaKnown RBP20.3■□□□□ 0.84
CCDC88B-206ENST00000473405 ALDH1A3P47895 512 aa20.3■□□□□ 0.84
CCDC88B-206ENST00000473405 CDR1P51861 262 aa20.3■□□□□ 0.84
CCDC88B-206ENST00000473405 E2F4Q16254 413 aa20.3■□□□□ 0.84
CCDC88B-206ENST00000473405 STXBP5Q5T5C0 1151 aa20.3■□□□□ 0.84
CCDC88B-206ENST00000473405 NT5DC4Q86YG4 428 aa20.3■□□□□ 0.84
CCDC88B-206ENST00000473405 PSMG2Q969U7 264 aa20.3■□□□□ 0.84
CCDC88B-206ENST00000473405 RSPRY1Q96DX4 576 aa20.3■□□□□ 0.84
CCDC88B-206ENST00000473405 CBWD1Q9BRT8 395 aa20.3■□□□□ 0.84
CCDC88B-206ENST00000473405 MKNK1Q9BUB5 465 aa20.3■□□□□ 0.84
CCDC88B-206ENST00000473405 TRMT61BQ9BVS5 477 aaKnown RBP20.3■□□□□ 0.84
CCDC88B-206ENST00000473405 ZNF334Q9HCZ1 680 aaPredicted RBP20.3■□□□□ 0.84
CCDC88B-206ENST00000473405 PANK4Q9NVE7 773 aa20.3■□□□□ 0.84
CCDC88B-206ENST00000473405 DSEQ9UL01 958 aa20.3■□□□□ 0.84
CCDC88B-206ENST00000473405 PCDHB13Q9Y5F0 798 aa20.3■□□□□ 0.84
CCDC88B-206ENST00000473405 PSMC3P17980 439 aa20.29■□□□□ 0.84
CCDC88B-206ENST00000473405 GARTP22102 1010 aa20.29■□□□□ 0.84
CCDC88B-206ENST00000473405 ALCAMQ13740 583 aa20.29■□□□□ 0.84
CCDC88B-206ENST00000473405 STK38Q15208 465 aa20.29■□□□□ 0.84
CCDC88B-206ENST00000473405 WSCD1Q658N2 575 aa20.29■□□□□ 0.84
CCDC88B-206ENST00000473405 GAREM2Q75VX8 874 aa20.29■□□□□ 0.84
CCDC88B-206ENST00000473405 ZNF687Q8N1G0 1237 aa20.29■□□□□ 0.84
CCDC88B-206ENST00000473405 GLIS3Q8NEA6 775 aa20.29■□□□□ 0.84
CCDC88B-206ENST00000473405 CXorf38Q8TB03 319 aa20.29■□□□□ 0.84
CCDC88B-206ENST00000473405 CLDN23Q96B33 292 aa20.29■□□□□ 0.84
CCDC88B-206ENST00000473405 FAM84AQ96KN4 292 aa20.29■□□□□ 0.84
CCDC88B-206ENST00000473405 BCO2Q9BYV7 579 aa20.29■□□□□ 0.84
CCDC88B-206ENST00000473405 SLITRK6Q9H5Y7 841 aa20.29■□□□□ 0.84
CCDC88B-206ENST00000473405 BRD9Q9H8M2 597 aa20.29■□□□□ 0.84
CCDC88B-206ENST00000473405 RBAKQ9NYW8 714 aaPredicted RBP20.29■□□□□ 0.84
CCDC88B-206ENST00000473405 ASB3Q9Y575 518 aa20.29■□□□□ 0.84
CCDC88B-206ENST00000473405 CEP250Q9BV73 2442 aa20.29■□□□□ 0.84
CCDC88B-206ENST00000473405 KPNA7A9QM74 516 aa20.28■□□□□ 0.84
CCDC88B-206ENST00000473405 ARNTLO00327 626 aa20.28■□□□□ 0.84
CCDC88B-206ENST00000473405 SPTLC2O15270 562 aa20.28■□□□□ 0.84
CCDC88B-206ENST00000473405 ATF6P18850 670 aa20.28■□□□□ 0.84
CCDC88B-206ENST00000473405 GDI1P31150 447 aa20.28■□□□□ 0.84
CCDC88B-206ENST00000473405 FZD5Q13467 585 aa20.28■□□□□ 0.84
CCDC88B-206ENST00000473405 SV2CQ496J9 727 aa20.28■□□□□ 0.84
CCDC88B-206ENST00000473405 SCARA3Q6AZY7 606 aa20.28■□□□□ 0.84
CCDC88B-206ENST00000473405 ZNF852Q6ZMS4 543 aa20.28■□□□□ 0.84
CCDC88B-206ENST00000473405 DNAJB7Q7Z6W7 309 aaPredicted RBP20.28■□□□□ 0.84
CCDC88B-206ENST00000473405 LRRTM3Q86VH5 581 aa20.28■□□□□ 0.84
CCDC88B-206ENST00000473405 C1orf127Q8N9H9 656 aa20.28■□□□□ 0.84
CCDC88B-206ENST00000473405 DEPDC1BQ8WUY9 529 aa20.28■□□□□ 0.84
CCDC88B-206ENST00000473405 IRF7Q92985 503 aa20.28■□□□□ 0.84
CCDC88B-206ENST00000473405 ZNF560Q96MR9 790 aa20.28■□□□□ 0.84
CCDC88B-206ENST00000473405 LPIN3Q9BQK8 851 aa20.28■□□□□ 0.84
CCDC88B-206ENST00000473405 GPR88Q9GZN0 384 aa20.28■□□□□ 0.84
CCDC88B-206ENST00000473405 TNMDQ9H2S6 317 aa20.28■□□□□ 0.84
CCDC88B-206ENST00000473405 TRPV5Q9NQA5 729 aa20.28■□□□□ 0.84
CCDC88B-206ENST00000473405 GOLGA8IPA6NC78 632 aa20.27■□□□□ 0.84
CCDC88B-206ENST00000473405 GOLGA8JA6NMD2 632 aa20.27■□□□□ 0.84
CCDC88B-206ENST00000473405 PPP6R2O75170 966 aa20.27■□□□□ 0.84
CCDC88B-206ENST00000473405 PRPF6O94906 941 aaKnown RBP20.27■□□□□ 0.84
CCDC88B-206ENST00000473405 ITGB3P05106 788 aa20.27■□□□□ 0.84
CCDC88B-206ENST00000473405 POLR2BP30876 1174 aaKnown RBP20.27■□□□□ 0.84
CCDC88B-206ENST00000473405 MAGEA9P43362 315 aa20.27■□□□□ 0.84
CCDC88B-206ENST00000473405 TFAMQ00059 246 aaKnown RBP20.27■□□□□ 0.84
CCDC88B-206ENST00000473405 METTL23Q86XA0 190 aa20.27■□□□□ 0.84
CCDC88B-206ENST00000473405 MFSD6LQ8IWD5 586 aa20.27■□□□□ 0.84
CCDC88B-206ENST00000473405 SYCP3Q8IZU3 236 aa20.27■□□□□ 0.84
CCDC88B-206ENST00000473405 ADSSL1Q8N142 457 aa20.27■□□□□ 0.84
CCDC88B-206ENST00000473405 HPS3Q969F9 1004 aa20.27■□□□□ 0.84
CCDC88B-206ENST00000473405 SNX21Q969T3 373 aa20.27■□□□□ 0.84
CCDC88B-206ENST00000473405 SEPT5Q99719 369 aaPredicted RBP20.27■□□□□ 0.84
CCDC88B-206ENST00000473405 KBTBD4Q9NVX7 518 aa20.27■□□□□ 0.84
CCDC88B-206ENST00000473405 SPATA6Q9NWH7 488 aaPredicted RBP20.27■□□□□ 0.84
CCDC88B-206ENST00000473405 TFIP11Q9UBB9 837 aaKnown RBP20.27■□□□□ 0.84
CCDC88B-206ENST00000473405 HEPACAM2A8MVW5 462 aa20.26■□□□□ 0.83
CCDC88B-206ENST00000473405 EXTL3O43909 919 aa20.26■□□□□ 0.83
CCDC88B-206ENST00000473405 YEATS4O95619 227 aa20.26■□□□□ 0.83
CCDC88B-206ENST00000473405 LDHAP00338 332 aaKnown RBP20.26■□□□□ 0.83
CCDC88B-206ENST00000473405 PNPLA4P41247 253 aa20.26■□□□□ 0.83
CCDC88B-206ENST00000473405 RPS9P46781 194 aaKnown RBP20.26■□□□□ 0.83
CCDC88B-206ENST00000473405 ITIH5Q86UX2 942 aa20.26■□□□□ 0.83
CCDC88B-206ENST00000473405 CCDC65Q8IXS2 484 aa20.26■□□□□ 0.83
CCDC88B-206ENST00000473405 NELL2Q99435 816 aa20.26■□□□□ 0.83
CCDC88B-206ENST00000473405 TRIM9Q9C026 710 aa20.26■□□□□ 0.83
CCDC88B-206ENST00000473405 SEMA4AQ9H3S1 761 aa20.26■□□□□ 0.83
CCDC88B-206ENST00000473405 PCIF1Q9H4Z3 704 aa20.26■□□□□ 0.83
CCDC88B-206ENST00000473405 PTPRJQ12913 1337 aa20.26■□□□□ 0.83
CCDC88B-206ENST00000473405 GABRR2P28476 465 aa20.25■□□□□ 0.83
CCDC88B-206ENST00000473405 HOXD13P35453 343 aa20.25■□□□□ 0.83
CCDC88B-206ENST00000473405 TUFMP49411 452 aaKnown RBP20.25■□□□□ 0.83
CCDC88B-206ENST00000473405 FCHO2Q0JRZ9 810 aa20.25■□□□□ 0.83
CCDC88B-206ENST00000473405 MGAT5BQ3V5L5 792 aa20.25■□□□□ 0.83
CCDC88B-206ENST00000473405 ZC3H14Q6PJT7 736 aaKnown RBP20.25■□□□□ 0.83
CCDC88B-206ENST00000473405 SHC4Q6S5L8 630 aa20.25■□□□□ 0.83
CCDC88B-206ENST00000473405 THEM5Q8N1Q8 247 aa20.25■□□□□ 0.83
CCDC88B-206ENST00000473405 PDCL2Q8N4E4 241 aa20.25■□□□□ 0.83
CCDC88B-206ENST00000473405 C2orf15Q8WU43 125 aaKnown RBP20.25■□□□□ 0.83
CCDC88B-206ENST00000473405 E2F7Q96AV8 911 aa20.25■□□□□ 0.83
CCDC88B-206ENST00000473405 ZNF396Q96N95 335 aaPredicted RBP20.25■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms