RNA–Protein interactions for RNA: ENST00000473212.1

COL18A1-207, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 2,515 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-207ENST00000473212 TARSP26639 723 aaKnown RBP22.3■■□□□ 1.16
COL18A1-207ENST00000473212 CDC25CP30307 473 aa22.3■■□□□ 1.16
COL18A1-207ENST00000473212 NFX1Q12986 1120 aaKnown RBP22.3■■□□□ 1.16
COL18A1-207ENST00000473212 SETDB1Q15047 1291 aa22.3■■□□□ 1.16
COL18A1-207ENST00000473212 MFSD7Q6UXD7 560 aa22.3■■□□□ 1.16
COL18A1-207ENST00000473212 ABRAQ8N0Z2 381 aa22.3■■□□□ 1.16
COL18A1-207ENST00000473212 RBBP8NLQ8NC74 664 aaPredicted RBP22.3■■□□□ 1.16
COL18A1-207ENST00000473212 DENND1AQ8TEH3 1009 aa22.3■■□□□ 1.16
COL18A1-207ENST00000473212 TMEM237Q96Q45 408 aa22.3■■□□□ 1.16
COL18A1-207ENST00000473212 JPH1Q9HDC5 661 aaPredicted RBP22.3■■□□□ 1.16
COL18A1-207ENST00000473212 ZNF148Q9UQR1 794 aa22.3■■□□□ 1.16
COL18A1-207ENST00000473212 LRRIQ4A6NIV6 560 aa22.3■■□□□ 1.16
COL18A1-207ENST00000473212 F8VP50 259 aa22.3■■□□□ 1.16
COL18A1-207ENST00000473212 DNALI1O14645 258 aaPredicted RBP22.3■■□□□ 1.16
COL18A1-207ENST00000473212 LIASO43766 372 aa22.3■■□□□ 1.16
COL18A1-207ENST00000473212 ZBED4O75132 1171 aa22.3■■□□□ 1.16
COL18A1-207ENST00000473212 KRT15P19012 456 aa22.3■■□□□ 1.16
COL18A1-207ENST00000473212 CCND2P30279 289 aa22.3■■□□□ 1.16
COL18A1-207ENST00000473212 OGDHQ02218 1023 aa22.3■■□□□ 1.16
COL18A1-207ENST00000473212 GAD2Q05329 585 aa22.3■■□□□ 1.16
COL18A1-207ENST00000473212 PSMD6Q15008 389 aa22.3■■□□□ 1.16
COL18A1-207ENST00000473212 BZW1Q7L1Q6 419 aaKnown RBP22.3■■□□□ 1.16
COL18A1-207ENST00000473212 TAB3Q8N5C8 712 aaPredicted RBP22.3■■□□□ 1.16
COL18A1-207ENST00000473212 MRPL47Q9HD33 250 aaKnown RBP22.3■■□□□ 1.16
COL18A1-207ENST00000473212 COL11A1P12107 1806 aaPredicted RBP22.3■■□□□ 1.16
COL18A1-207ENST00000473212 PECAM1P16284 738 aaPredicted RBP22.29■■□□□ 1.16
COL18A1-207ENST00000473212 SPARCL1Q14515 664 aa22.29■■□□□ 1.16
COL18A1-207ENST00000473212 EMC2Q15006 297 aa22.29■■□□□ 1.16
COL18A1-207ENST00000473212 TMEM130Q8N3G9 435 aa22.29■■□□□ 1.16
COL18A1-207ENST00000473212 ATP6V0A1Q93050 837 aa22.29■■□□□ 1.16
COL18A1-207ENST00000473212 RAB3IPQ96QF0 476 aaPredicted RBP22.29■■□□□ 1.16
COL18A1-207ENST00000473212 SLC5A4Q9NY91 659 aa22.29■■□□□ 1.16
COL18A1-207ENST00000473212 RBAKQ9NYW8 714 aaPredicted RBP22.29■■□□□ 1.16
COL18A1-207ENST00000473212 SAE1Q9UBE0 346 aaPredicted RBP22.29■■□□□ 1.16
COL18A1-207ENST00000473212 FBXO40Q9UH90 709 aa22.29■■□□□ 1.16
COL18A1-207ENST00000473212 HAO1Q9UJM8 370 aa22.29■■□□□ 1.16
COL18A1-207ENST00000473212 IVNS1ABPQ9Y6Y0 642 aa22.29■■□□□ 1.16
COL18A1-207ENST00000473212 MYH9P35579 1960 aaKnown RBP22.29■■□□□ 1.16
COL18A1-207ENST00000473212 MAGEB2O15479 319 aa22.29■■□□□ 1.16
COL18A1-207ENST00000473212 RPA3P35244 121 aaPredicted RBP22.29■■□□□ 1.16
COL18A1-207ENST00000473212 ARSEP51690 589 aa22.29■■□□□ 1.16
COL18A1-207ENST00000473212 KCNV2Q8TDN2 545 aa22.29■■□□□ 1.16
COL18A1-207ENST00000473212 LRRC37BQ96QE4 947 aa22.29■■□□□ 1.16
COL18A1-207ENST00000473212 FOXP3Q9BZS1 431 aa22.29■■□□□ 1.16
COL18A1-207ENST00000473212 VPS37BQ9H9H4 285 aa22.29■■□□□ 1.16
COL18A1-207ENST00000473212 SLC9A2Q9UBY0 812 aa22.29■■□□□ 1.16
COL18A1-207ENST00000473212 GOLGA8SH3BPF8 625 aa22.28■■□□□ 1.16
COL18A1-207ENST00000473212 GOLGA8MH3BSY2 632 aa22.28■■□□□ 1.16
COL18A1-207ENST00000473212 ITGBL1O95965 494 aaPredicted RBP22.28■■□□□ 1.16
COL18A1-207ENST00000473212 CST3P01034 146 aaPredicted RBP22.28■■□□□ 1.16
COL18A1-207ENST00000473212 YARSP54577 528 aaKnown RBP22.28■■□□□ 1.16
COL18A1-207ENST00000473212 NOP14P78316 857 aaKnown RBP22.28■■□□□ 1.16
COL18A1-207ENST00000473212 CLDN10P78369 228 aa22.28■■□□□ 1.16
COL18A1-207ENST00000473212 GPS1Q13098 491 aa22.28■■□□□ 1.16
COL18A1-207ENST00000473212 NR1H3Q13133 447 aa22.28■■□□□ 1.16
COL18A1-207ENST00000473212 MOGSQ13724 837 aa22.28■■□□□ 1.16
COL18A1-207ENST00000473212 PLEKHA7Q6IQ23 1121 aa22.28■■□□□ 1.16
COL18A1-207ENST00000473212 UBN1Q9NPG3 1134 aa22.28■■□□□ 1.16
COL18A1-207ENST00000473212 ZNRF3Q9ULT6 936 aa22.28■■□□□ 1.16
COL18A1-207ENST00000473212 USH1CQ9Y6N9 552 aa22.28■■□□□ 1.16
COL18A1-207ENST00000473212 PRPF4O43172 522 aaKnown RBP eCLIP22.28■■□□□ 1.163e-9■■■■□ 24.8
COL18A1-207ENST00000473212 DPEP1P16444 411 aa22.28■■□□□ 1.16
COL18A1-207ENST00000473212 GLRA2P23416 452 aa22.28■■□□□ 1.16
COL18A1-207ENST00000473212 TNFSF9P41273 254 aa22.28■■□□□ 1.16
COL18A1-207ENST00000473212 LMNB2Q03252 620 aa22.28■■□□□ 1.16
COL18A1-207ENST00000473212 ANKRD20A2Q5SQ80 823 aa22.28■■□□□ 1.16
COL18A1-207ENST00000473212 ANKRD20A1Q5TYW2 823 aa22.28■■□□□ 1.16
COL18A1-207ENST00000473212 ANKRD20A3Q5VUR7 823 aa22.28■■□□□ 1.16
COL18A1-207ENST00000473212 CEP128Q6ZU80 1094 aa22.28■■□□□ 1.16
COL18A1-207ENST00000473212 MCPH1Q8NEM0 835 aa22.28■■□□□ 1.16
COL18A1-207ENST00000473212 SMC6Q96SB8 1091 aa22.28■■□□□ 1.16
COL18A1-207ENST00000473212 PSAPP07602 524 aa22.27■■□□□ 1.16
COL18A1-207ENST00000473212 NBPF12Q5TAG4 269 aaPredicted RBP22.27■■□□□ 1.16
COL18A1-207ENST00000473212 ABHD15Q6UXT9 468 aa22.27■■□□□ 1.16
COL18A1-207ENST00000473212 MCEEQ96PE7 176 aa22.27■■□□□ 1.16
COL18A1-207ENST00000473212 LRMDAQ9H2I8 198 aa22.27■■□□□ 1.16
COL18A1-207ENST00000473212 C17orf75Q9HAS0 396 aa22.27■■□□□ 1.16
COL18A1-207ENST00000473212 NKX1-2Q9UD57 310 aaPredicted RBP22.27■■□□□ 1.16
COL18A1-207ENST00000473212 SKAP2O75563 359 aaPredicted RBP22.27■■□□□ 1.16
COL18A1-207ENST00000473212 KCNA3P22001 575 aa22.27■■□□□ 1.16
COL18A1-207ENST00000473212 SLC1A5Q15758 541 aa22.27■■□□□ 1.16
COL18A1-207ENST00000473212 SAMD7Q7Z3H4 446 aa22.27■■□□□ 1.16
COL18A1-207ENST00000473212 NIM1KQ8IY84 436 aa22.27■■□□□ 1.16
COL18A1-207ENST00000473212 ZBED8Q8IZ13 594 aa22.27■■□□□ 1.16
COL18A1-207ENST00000473212 FEZF2Q8TBJ5 459 aa22.27■■□□□ 1.16
COL18A1-207ENST00000473212 GPRASP2Q96D09 838 aa22.27■■□□□ 1.16
COL18A1-207ENST00000473212 TTC25Q96NG3 672 aa22.27■■□□□ 1.16
COL18A1-207ENST00000473212 SLITRK1Q96PX8 696 aa22.27■■□□□ 1.16
COL18A1-207ENST00000473212 BATF3Q9NR55 127 aa22.27■■□□□ 1.16
COL18A1-207ENST00000473212 SCINQ9Y6U3 715 aa22.27■■□□□ 1.16
COL18A1-207ENST00000473212 CA4P22748 312 aa22.26■■□□□ 1.15
COL18A1-207ENST00000473212 BRD2P25440 801 aaKnown RBP22.26■■□□□ 1.15
COL18A1-207ENST00000473212 CETN2P41208 172 aa22.26■■□□□ 1.15
COL18A1-207ENST00000473212 RNASELQ05823 741 aaKnown RBP22.26■■□□□ 1.15
COL18A1-207ENST00000473212 PDK4Q16654 411 aa22.26■■□□□ 1.15
COL18A1-207ENST00000473212 EAPPQ56P03 285 aaPredicted RBP22.26■■□□□ 1.15
COL18A1-207ENST00000473212 TDRPQ86YL5 185 aa22.26■■□□□ 1.15
COL18A1-207ENST00000473212 MTMR14Q8NCE2 650 aa22.26■■□□□ 1.15
COL18A1-207ENST00000473212 LRRC8CQ8TDW0 803 aa22.26■■□□□ 1.15
COL18A1-207ENST00000473212 ZNF606Q8WXB4 792 aa22.26■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms