RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 ZFPM1Q8IX07 1006 aa5.16□□□□□ -1.58
VPS13A-210ENST00000471439 C1orf162Q8NEQ5 155 aaPredicted RBP5.16□□□□□ -1.58
VPS13A-210ENST00000471439 GFM2Q969S9 779 aaKnown RBP5.16□□□□□ -1.58
VPS13A-210ENST00000471439 FERMT2Q96AC1 680 aa5.16□□□□□ -1.58
VPS13A-210ENST00000471439 EAF2Q96CJ1 260 aaPredicted RBP5.16□□□□□ -1.58
VPS13A-210ENST00000471439 MENTQ9BUN1 341 aa5.16□□□□□ -1.58
VPS13A-210ENST00000471439 ARHGAP39Q9C0H5 1083 aa5.16□□□□□ -1.58
VPS13A-210ENST00000471439 QRSL1Q9H0R6 528 aaKnown RBP5.16□□□□□ -1.58
VPS13A-210ENST00000471439 NELFAQ9H3P2 528 aa5.16□□□□□ -1.58
VPS13A-210ENST00000471439 IL23AQ9NPF7 189 aa5.16□□□□□ -1.58
VPS13A-210ENST00000471439 ING3Q9NXR8 418 aa5.16□□□□□ -1.58
VPS13A-210ENST00000471439 NCDNQ9UBB6 729 aa5.16□□□□□ -1.58
VPS13A-210ENST00000471439 ING1Q9UK53 422 aaPredicted RBP5.16□□□□□ -1.58
VPS13A-210ENST00000471439 TMPRSS11EQ9UL52 423 aa5.16□□□□□ -1.58
VPS13A-210ENST00000471439 USP18Q9UMW8 372 aa5.16□□□□□ -1.58
VPS13A-210ENST00000471439 MYPNQ86TC9 1320 aa5.16□□□□□ -1.58
VPS13A-210ENST00000471439 ATRNL1Q5VV63 1379 aa5.16□□□□□ -1.58
VPS13A-210ENST00000471439 MYO18BQ8IUG5 2567 aa5.15□□□□□ -1.58
VPS13A-210ENST00000471439 SCN7AQ01118 1682 aa5.15□□□□□ -1.58
VPS13A-210ENST00000471439 MANSC4A6NHS7 340 aaPredicted RBP5.15□□□□□ -1.59
VPS13A-210ENST00000471439 NPIPB8E9PQR5 432 aa5.15□□□□□ -1.59
VPS13A-210ENST00000471439 PCDHGA12O60330 932 aa5.15□□□□□ -1.59
VPS13A-210ENST00000471439 KRT38O76015 456 aa5.15□□□□□ -1.59
VPS13A-210ENST00000471439 PARNO95453 639 aaKnown RBP5.15□□□□□ -1.59
VPS13A-210ENST00000471439 PFKMP08237 780 aa5.15□□□□□ -1.59
VPS13A-210ENST00000471439 HMGB1P09429 215 aaKnown RBP5.15□□□□□ -1.59
VPS13A-210ENST00000471439 SESN2P58004 480 aaPredicted RBP5.15□□□□□ -1.59
VPS13A-210ENST00000471439 SRSF2Q01130 221 aaKnown RBP5.15□□□□□ -1.59
VPS13A-210ENST00000471439 CD69Q07108 199 aa5.15□□□□□ -1.59
VPS13A-210ENST00000471439 FOXE3Q13461 319 aa5.15□□□□□ -1.59
VPS13A-210ENST00000471439 PRKG1Q13976 671 aa5.15□□□□□ -1.59
VPS13A-210ENST00000471439 TRIM25Q14258 630 aaKnown RBP5.15□□□□□ -1.59
VPS13A-210ENST00000471439 SHHQ15465 462 aa5.15□□□□□ -1.59
VPS13A-210ENST00000471439 KRT40Q6A162 431 aa5.15□□□□□ -1.59
VPS13A-210ENST00000471439 ESPNLQ6ZVH7 1005 aa5.15□□□□□ -1.59
VPS13A-210ENST00000471439 DGLUCYQ7Z3D6 616 aa5.15□□□□□ -1.59
VPS13A-210ENST00000471439 LYSMD2Q8IV50 215 aa5.15□□□□□ -1.59
VPS13A-210ENST00000471439 C1orf210Q8IVY1 113 aa5.15□□□□□ -1.59
VPS13A-210ENST00000471439 MSL3Q8N5Y2 521 aaKnown RBP5.15□□□□□ -1.59
VPS13A-210ENST00000471439 HOOK2Q96ED9 719 aa5.15□□□□□ -1.59
VPS13A-210ENST00000471439 ZNF503Q96F45 646 aa5.15□□□□□ -1.59
VPS13A-210ENST00000471439 FAM89AQ96GI7 184 aa5.15□□□□□ -1.59
VPS13A-210ENST00000471439 FUBP3Q96I24 572 aaKnown RBP eCLIP5.15□□□□□ -1.59
VPS13A-210ENST00000471439 ZNF341Q9BYN7 854 aa5.15□□□□□ -1.59
VPS13A-210ENST00000471439 USP36Q9P275 1121 aaKnown RBP5.15□□□□□ -1.59
VPS13A-210ENST00000471439 PCDHB6Q9Y5E3 794 aa5.15□□□□□ -1.59
VPS13A-210ENST00000471439 PCDHGA9Q9Y5G4 932 aaKnown RBP5.15□□□□□ -1.59
VPS13A-210ENST00000471439 PCDHGA8Q9Y5G5 932 aa5.15□□□□□ -1.59
VPS13A-210ENST00000471439 PCDHGA7Q9Y5G6 932 aa5.15□□□□□ -1.59
VPS13A-210ENST00000471439 PCDHGA6Q9Y5G7 932 aa5.15□□□□□ -1.59
VPS13A-210ENST00000471439 PCDHGA3Q9Y5H0 932 aa5.15□□□□□ -1.59
VPS13A-210ENST00000471439 PCDHGA2Q9Y5H1 932 aa5.15□□□□□ -1.59
VPS13A-210ENST00000471439 HS3ST3A1Q9Y663 406 aa5.15□□□□□ -1.59
VPS13A-210ENST00000471439 ASTN2O75129 1339 aaPredicted RBP5.15□□□□□ -1.59
VPS13A-210ENST00000471439 WASHC2AQ641Q2 1341 aa5.15□□□□□ -1.59
VPS13A-210ENST00000471439 CEP250Q9BV73 2442 aa5.15□□□□□ -1.59
VPS13A-210ENST00000471439 DOPEY1Q5JWR5 2465 aa5.15□□□□□ -1.59
VPS13A-210ENST00000471439 COL3A1P02461 1466 aaPredicted RBP5.14□□□□□ -1.59
VPS13A-210ENST00000471439 PMS2P1A4D2B8 440 aa5.14□□□□□ -1.59
VPS13A-210ENST00000471439 VSIG10L2P0DP72 767 aa5.14□□□□□ -1.59
VPS13A-210ENST00000471439 GAAP10253 952 aa5.14□□□□□ -1.59
VPS13A-210ENST00000471439 OSMP13725 252 aa5.14□□□□□ -1.59
VPS13A-210ENST00000471439 NPR1P16066 1061 aa5.14□□□□□ -1.59
VPS13A-210ENST00000471439 ENPP1P22413 925 aa5.14□□□□□ -1.59
VPS13A-210ENST00000471439 RAB27AP51159 221 aa5.14□□□□□ -1.59
VPS13A-210ENST00000471439 SCNN1GP51170 649 aa5.14□□□□□ -1.59
VPS13A-210ENST00000471439 ODF1Q14990 250 aa5.14□□□□□ -1.59
VPS13A-210ENST00000471439 FSCN1Q16658 493 aaKnown RBP5.14□□□□□ -1.59
VPS13A-210ENST00000471439 AAK1Q2M2I8 961 aa5.14□□□□□ -1.59
VPS13A-210ENST00000471439 TOR2AQ5JU69 321 aa5.14□□□□□ -1.59
VPS13A-210ENST00000471439 MIIPQ5JXC2 388 aa5.14□□□□□ -1.59
VPS13A-210ENST00000471439 TBC1D9BQ66K14 1250 aa5.14□□□□□ -1.59
VPS13A-210ENST00000471439 PGM2L1Q6PCE3 622 aa5.14□□□□□ -1.59
VPS13A-210ENST00000471439 ELOA2Q8IYF1 753 aaPredicted RBP5.14□□□□□ -1.59
VPS13A-210ENST00000471439 MB21D1Q8N884 522 aa5.14□□□□□ -1.59
VPS13A-210ENST00000471439 CACTINQ8WUQ7 758 aaKnown RBP5.14□□□□□ -1.59
VPS13A-210ENST00000471439 LPPQ93052 612 aa5.14□□□□□ -1.59
VPS13A-210ENST00000471439 PGBD4Q96DM1 585 aa5.14□□□□□ -1.59
VPS13A-210ENST00000471439 FAXDC2Q96IV6 333 aa5.14□□□□□ -1.59
VPS13A-210ENST00000471439 RTFDC1Q9BY42 306 aaPredicted RBP5.14□□□□□ -1.59
VPS13A-210ENST00000471439 GGA3Q9NZ52 723 aa5.14□□□□□ -1.59
VPS13A-210ENST00000471439 CEP72Q9P209 647 aa5.14□□□□□ -1.59
VPS13A-210ENST00000471439 RCAN3Q9UKA8 241 aa5.14□□□□□ -1.59
VPS13A-210ENST00000471439 SOS1Q07889 1333 aaPredicted RBP5.14□□□□□ -1.59
VPS13A-210ENST00000471439 FRYQ5TBA9 3013 aa5.14□□□□□ -1.59
VPS13A-210ENST00000471439 AKAP10O43572 662 aa5.13□□□□□ -1.59
VPS13A-210ENST00000471439 LY86O95711 162 aa5.13□□□□□ -1.59
VPS13A-210ENST00000471439 ACVRL1P37023 503 aa5.13□□□□□ -1.59
VPS13A-210ENST00000471439 KIR2DL3P43628 341 aa5.13□□□□□ -1.59
VPS13A-210ENST00000471439 EIF5P55010 431 aaKnown RBP5.13□□□□□ -1.59
VPS13A-210ENST00000471439 PTH1RQ03431 593 aa5.13□□□□□ -1.59
VPS13A-210ENST00000471439 PPARAQ07869 468 aa5.13□□□□□ -1.59
VPS13A-210ENST00000471439 TCF15Q12870 199 aa5.13□□□□□ -1.59
VPS13A-210ENST00000471439 FAPQ12884 760 aa5.13□□□□□ -1.59
VPS13A-210ENST00000471439 RRP1BQ14684 758 aaKnown RBP5.13□□□□□ -1.59
VPS13A-210ENST00000471439 ELAVL1Q15717 326 aaKnown RBP5.13□□□□□ -1.59
VPS13A-210ENST00000471439 C9orf50Q5SZB4 431 aa5.13□□□□□ -1.59
VPS13A-210ENST00000471439 FAM111BQ6SJ93 734 aa5.13□□□□□ -1.59
VPS13A-210ENST00000471439 ASCL5Q7RTU5 278 aa5.13□□□□□ -1.59
VPS13A-210ENST00000471439 ZBTB46Q86UZ6 589 aa5.13□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms