RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 PLXNA3P51805 1871 aa15.84■□□□□ 0.13
COL9A3-209ENST00000469852 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP15.84■□□□□ 0.13
COL9A3-209ENST00000469852 C2orf71A6NGG8 1288 aa15.84■□□□□ 0.13
COL9A3-209ENST00000469852 TBC1D4O60343 1298 aa15.84■□□□□ 0.13
COL9A3-209ENST00000469852 SERPINC1P01008 464 aa15.84■□□□□ 0.13
COL9A3-209ENST00000469852 CA8P35219 290 aa15.84■□□□□ 0.13
COL9A3-209ENST00000469852 CETN1Q12798 172 aa15.84■□□□□ 0.13
COL9A3-209ENST00000469852 PSMD5Q16401 504 aa15.84■□□□□ 0.13
COL9A3-209ENST00000469852 CCDC142Q17RM4 750 aa15.84■□□□□ 0.13
COL9A3-209ENST00000469852 WDR44Q5JSH3 913 aa15.84■□□□□ 0.13
COL9A3-209ENST00000469852 OVOS1Q6IE37 1185 aa15.84■□□□□ 0.13
COL9A3-209ENST00000469852 KIAA1841Q6NSI8 718 aa15.84■□□□□ 0.13
COL9A3-209ENST00000469852 GLYCTKQ8IVS8 523 aa15.84■□□□□ 0.13
COL9A3-209ENST00000469852 ADGRF2Q8IZF7 708 aa15.84■□□□□ 0.13
COL9A3-209ENST00000469852 MRPL43Q8N983 215 aaKnown RBP15.84■□□□□ 0.13
COL9A3-209ENST00000469852 APPL2Q8NEU8 664 aa15.84■□□□□ 0.13
COL9A3-209ENST00000469852 MICAL1Q8TDZ2 1067 aa15.84■□□□□ 0.13
COL9A3-209ENST00000469852 MRPL38Q96DV4 380 aaKnown RBP15.84■□□□□ 0.13
COL9A3-209ENST00000469852 LMAN2LQ9H0V9 348 aa15.84■□□□□ 0.13
COL9A3-209ENST00000469852 HMGXB4Q9UGU5 601 aa15.84■□□□□ 0.13
COL9A3-209ENST00000469852 SIK3Q9Y2K2 1263 aa15.84■□□□□ 0.13
COL9A3-209ENST00000469852 PRRC2BQ5JSZ5 2229 aaKnown RBP15.84■□□□□ 0.13
COL9A3-209ENST00000469852 GABRDO14764 452 aa15.83■□□□□ 0.12
COL9A3-209ENST00000469852 EPHB6O15197 1021 aa15.83■□□□□ 0.12
COL9A3-209ENST00000469852 OAZ2O95190 189 aa15.83■□□□□ 0.12
COL9A3-209ENST00000469852 TPM2P07951 284 aa15.83■□□□□ 0.12
COL9A3-209ENST00000469852 CNPP09543 421 aaKnown RBP15.83■□□□□ 0.12
COL9A3-209ENST00000469852 OR4Q2P0C623 313 aa15.83■□□□□ 0.12
COL9A3-209ENST00000469852 FOSL2P15408 326 aa15.83■□□□□ 0.12
COL9A3-209ENST00000469852 WARSP23381 471 aaKnown RBP15.83■□□□□ 0.12
COL9A3-209ENST00000469852 LMO2P25791 158 aa15.83■□□□□ 0.12
COL9A3-209ENST00000469852 CDR1P51861 262 aa15.83■□□□□ 0.12
COL9A3-209ENST00000469852 UBXN1Q04323 297 aa15.83■□□□□ 0.12
COL9A3-209ENST00000469852 YWHAHQ04917 246 aaPredicted RBP15.83■□□□□ 0.12
COL9A3-209ENST00000469852 SMC1AQ14683 1233 aaKnown RBP15.83■□□□□ 0.12
COL9A3-209ENST00000469852 SYCP1Q15431 976 aa15.83■□□□□ 0.12
COL9A3-209ENST00000469852 RRAGAQ7L523 313 aa15.83■□□□□ 0.12
COL9A3-209ENST00000469852 UBR7Q8N806 425 aa15.83■□□□□ 0.12
COL9A3-209ENST00000469852 CCDC150Q8NCX0 1101 aa15.83■□□□□ 0.12
COL9A3-209ENST00000469852 OR10T2Q8NGX3 314 aa15.83■□□□□ 0.12
COL9A3-209ENST00000469852 KREMEN1Q96MU8 473 aa15.83■□□□□ 0.12
COL9A3-209ENST00000469852 NT5C1BQ96P26 610 aa15.83■□□□□ 0.12
COL9A3-209ENST00000469852 LPIN3Q9BQK8 851 aa15.83■□□□□ 0.12
COL9A3-209ENST00000469852 CLSTN3Q9BQT9 956 aa15.83■□□□□ 0.12
COL9A3-209ENST00000469852 ANP32EQ9BTT0 268 aa15.83■□□□□ 0.12
COL9A3-209ENST00000469852 LSM14BQ9BX40 385 aaKnown RBP15.83■□□□□ 0.12
COL9A3-209ENST00000469852 RXFP1Q9HBX9 757 aa15.83■□□□□ 0.12
COL9A3-209ENST00000469852 NGRNQ9NPE2 291 aaKnown RBP15.83■□□□□ 0.12
COL9A3-209ENST00000469852 MRPL17Q9NRX2 175 aaKnown RBP15.83■□□□□ 0.12
COL9A3-209ENST00000469852 IFNKQ9P0W0 207 aa15.83■□□□□ 0.12
COL9A3-209ENST00000469852 MTRRQ9UBK8 725 aa15.83■□□□□ 0.12
COL9A3-209ENST00000469852 STK39Q9UEW8 545 aa15.83■□□□□ 0.12
COL9A3-209ENST00000469852 FBXL5Q9UKA1 691 aa15.83■□□□□ 0.12
COL9A3-209ENST00000469852 IRAK3Q9Y616 596 aa15.83■□□□□ 0.12
COL9A3-209ENST00000469852 MTCH2Q9Y6C9 303 aa15.83■□□□□ 0.12
COL9A3-209ENST00000469852 TEX28O15482 410 aa15.82■□□□□ 0.12
COL9A3-209ENST00000469852 TACC1O75410 805 aa15.82■□□□□ 0.12
COL9A3-209ENST00000469852 CD58P19256 250 aa15.82■□□□□ 0.12
COL9A3-209ENST00000469852 ACAT1P24752 427 aaKnown RBP15.82■□□□□ 0.12
COL9A3-209ENST00000469852 GTF2F1P35269 517 aaKnown RBP eCLIP15.82■□□□□ 0.12
COL9A3-209ENST00000469852 ORC1Q13415 861 aa15.82■□□□□ 0.12
COL9A3-209ENST00000469852 CUL2Q13617 745 aa15.82■□□□□ 0.12
COL9A3-209ENST00000469852 NR1I3Q14994 352 aa15.82■□□□□ 0.12
COL9A3-209ENST00000469852 CTXN3Q4LDR2 81 aa15.82■□□□□ 0.12
COL9A3-209ENST00000469852 FKBP15Q5T1M5 1219 aa15.82■□□□□ 0.12
COL9A3-209ENST00000469852 ANKS3Q6ZW76 656 aa15.82■□□□□ 0.12
COL9A3-209ENST00000469852 DPH6Q7L8W6 267 aa15.82■□□□□ 0.12
COL9A3-209ENST00000469852 TMEM86AQ8N2M4 240 aa15.82■□□□□ 0.12
COL9A3-209ENST00000469852 PPM1KQ8N3J5 372 aa15.82■□□□□ 0.12
COL9A3-209ENST00000469852 KLHL5Q96PQ7 755 aa15.82■□□□□ 0.12
COL9A3-209ENST00000469852 ERGIC2Q96RQ1 377 aa15.82■□□□□ 0.12
COL9A3-209ENST00000469852 TWNKQ96RR1 684 aa15.82■□□□□ 0.12
COL9A3-209ENST00000469852 DPEP3Q9H4B8 488 aa15.82■□□□□ 0.12
COL9A3-209ENST00000469852 DDX43Q9NXZ2 648 aaKnown RBP15.82■□□□□ 0.12
COL9A3-209ENST00000469852 DSEQ9UL01 958 aa15.82■□□□□ 0.12
COL9A3-209ENST00000469852 CDY1Q9Y6F8 540 aa15.82■□□□□ 0.12
COL9A3-209ENST00000469852 PER2O15055 1255 aa15.81■□□□□ 0.12
COL9A3-209ENST00000469852 ATP2C2O75185 946 aa15.81■□□□□ 0.12
COL9A3-209ENST00000469852 NOL4O94818 638 aa15.81■□□□□ 0.12
COL9A3-209ENST00000469852 PDGFRBP09619 1106 aa15.81■□□□□ 0.12
COL9A3-209ENST00000469852 ACO1P21399 889 aaKnown RBP15.81■□□□□ 0.12
COL9A3-209ENST00000469852 IGFBP4P22692 258 aa15.81■□□□□ 0.12
COL9A3-209ENST00000469852 UBASH3AP57075 661 aa15.81■□□□□ 0.12
COL9A3-209ENST00000469852 RBM10P98175 930 aaKnown RBP15.81■□□□□ 0.12
COL9A3-209ENST00000469852 PTPROQ16827 1216 aa15.81■□□□□ 0.12
COL9A3-209ENST00000469852 ZNF280DQ6N043 979 aa15.81■□□□□ 0.12
COL9A3-209ENST00000469852 RBM23Q86U06 439 aaKnown RBP15.81■□□□□ 0.12
COL9A3-209ENST00000469852 LRRTM3Q86VH5 581 aa15.81■□□□□ 0.12
COL9A3-209ENST00000469852 METTL23Q86XA0 190 aa15.81■□□□□ 0.12
COL9A3-209ENST00000469852 OR6B3Q8NGW1 331 aa15.81■□□□□ 0.12
COL9A3-209ENST00000469852 WHAMMQ8TF30 809 aa15.81■□□□□ 0.12
COL9A3-209ENST00000469852 XPO4Q9C0E2 1151 aaKnown RBP15.81■□□□□ 0.12
COL9A3-209ENST00000469852 GANQ9H2C0 597 aa15.81■□□□□ 0.12
COL9A3-209ENST00000469852 UBE2TQ9NPD8 197 aaPredicted RBP15.81■□□□□ 0.12
COL9A3-209ENST00000469852 FNIP2Q9P278 1114 aa15.81■□□□□ 0.12
COL9A3-209ENST00000469852 APEX2Q9UBZ4 518 aa15.81■□□□□ 0.12
COL9A3-209ENST00000469852 BACE2Q9Y5Z0 518 aa15.81■□□□□ 0.12
COL9A3-209ENST00000469852 FHOD1Q9Y613 1164 aa15.81■□□□□ 0.12
COL9A3-209ENST00000469852 P4HA1P13674 534 aa15.8■□□□□ 0.12
COL9A3-209ENST00000469852 POU3F3P20264 500 aaPredicted RBP15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms