RNA–Protein interactions for RNA: ENST00000454468.5

SMPD4-213, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 3,586 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-213ENST00000454468 MAGEA9P43362 315 aa12.65□□□□□ -0.38
SMPD4-213ENST00000454468 GCLCP48506 637 aaPredicted RBP12.65□□□□□ -0.38
SMPD4-213ENST00000454468 SNRPFP62306 86 aaKnown RBP12.65□□□□□ -0.38
SMPD4-213ENST00000454468 ADCY2Q08462 1091 aa12.65□□□□□ -0.38
SMPD4-213ENST00000454468 PDIA2Q13087 525 aaKnown RBP12.65□□□□□ -0.38
SMPD4-213ENST00000454468 HADHQ16836 314 aaKnown RBP12.65□□□□□ -0.38
SMPD4-213ENST00000454468 FAXCQ5TGI0 409 aa12.65□□□□□ -0.38
SMPD4-213ENST00000454468 TXNRD3NBQ6F5E7 133 aa12.65□□□□□ -0.38
SMPD4-213ENST00000454468 PALM2Q8IXS6 379 aa12.65□□□□□ -0.38
SMPD4-213ENST00000454468 KIF12Q96FN5 646 aa12.65□□□□□ -0.38
SMPD4-213ENST00000454468 FAM81BQ96LP2 452 aa12.65□□□□□ -0.38
SMPD4-213ENST00000454468 FHDC1Q9C0D6 1143 aaPredicted RBP12.65□□□□□ -0.38
SMPD4-213ENST00000454468 VPS33BQ9H267 617 aa12.65□□□□□ -0.38
SMPD4-213ENST00000454468 A0A0B4J269 797 aa12.65□□□□□ -0.38
SMPD4-213ENST00000454468 NFICP08651 508 aa12.65□□□□□ -0.38
SMPD4-213ENST00000454468 EFNA5P52803 228 aa12.65□□□□□ -0.38
SMPD4-213ENST00000454468 NRLP54845 237 aa12.65□□□□□ -0.38
SMPD4-213ENST00000454468 BYSLQ13895 437 aaKnown RBP12.65□□□□□ -0.38
SMPD4-213ENST00000454468 SGSM1Q2NKQ1 1148 aa12.65□□□□□ -0.38
SMPD4-213ENST00000454468 IER5Q5VY09 327 aa12.65□□□□□ -0.38
SMPD4-213ENST00000454468 GPC2Q8N158 579 aa12.65□□□□□ -0.38
SMPD4-213ENST00000454468 MSL3Q8N5Y2 521 aaKnown RBP12.65□□□□□ -0.38
SMPD4-213ENST00000454468 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.65□□□□□ -0.38
SMPD4-213ENST00000454468 XPO6Q96QU8 1125 aaKnown RBP12.65□□□□□ -0.38
SMPD4-213ENST00000454468 NTPCRQ9BSD7 190 aaKnown RBP12.65□□□□□ -0.38
SMPD4-213ENST00000454468 DHX33Q9H6R0 707 aaKnown RBP12.65□□□□□ -0.38
SMPD4-213ENST00000454468 IP6K2Q9UHH9 426 aa12.65□□□□□ -0.38
SMPD4-213ENST00000454468 ARFGEF1Q9Y6D6 1849 aa12.65□□□□□ -0.38
SMPD4-213ENST00000454468 TMEM120BA0PK00 339 aa12.65□□□□□ -0.38
SMPD4-213ENST00000454468 TCP11X1B4DZS4 312 aa12.65□□□□□ -0.38
SMPD4-213ENST00000454468 RIPK2O43353 540 aa12.65□□□□□ -0.38
SMPD4-213ENST00000454468 TJP3O95049 919 aa12.65□□□□□ -0.38
SMPD4-213ENST00000454468 ADCYAP1R1P41586 468 aa12.65□□□□□ -0.38
SMPD4-213ENST00000454468 NOMO3P69849 1222 aa12.65□□□□□ -0.38
SMPD4-213ENST00000454468 DENND1BQ6P3S1 775 aa12.65□□□□□ -0.38
SMPD4-213ENST00000454468 CATSPER4Q7RTX7 472 aa12.65□□□□□ -0.38
SMPD4-213ENST00000454468 EFCAB13Q8IY85 973 aa12.65□□□□□ -0.38
SMPD4-213ENST00000454468 LRRC34Q8IZ02 419 aa12.65□□□□□ -0.38
SMPD4-213ENST00000454468 ANKRD13AQ8IZ07 590 aa12.65□□□□□ -0.38
SMPD4-213ENST00000454468 DNERQ8NFT8 737 aa12.65□□□□□ -0.38
SMPD4-213ENST00000454468 CDCA5Q96FF9 252 aa12.65□□□□□ -0.38
SMPD4-213ENST00000454468 GRIN2DO15399 1336 aa12.65□□□□□ -0.38
SMPD4-213ENST00000454468 A6NNZ2 444 aa12.64□□□□□ -0.39
SMPD4-213ENST00000454468 TULP2O00295 520 aa12.64□□□□□ -0.39
SMPD4-213ENST00000454468 RFC1P35251 1148 aaPredicted RBP12.64□□□□□ -0.39
SMPD4-213ENST00000454468 OAZ1P54368 228 aa12.64□□□□□ -0.39
SMPD4-213ENST00000454468 CORO7P57737 925 aa12.64□□□□□ -0.39
SMPD4-213ENST00000454468 YWHAGP61981 247 aaKnown RBP eCLIP12.64□□□□□ -0.39
SMPD4-213ENST00000454468 MXD4Q14582 209 aaPredicted RBP12.64□□□□□ -0.39
SMPD4-213ENST00000454468 TUBB8Q3ZCM7 444 aa12.64□□□□□ -0.39
SMPD4-213ENST00000454468 DARS2Q6PI48 645 aaKnown RBP12.64□□□□□ -0.39
SMPD4-213ENST00000454468 CRELD2Q6UXH1 353 aaPredicted RBP12.64□□□□□ -0.39
SMPD4-213ENST00000454468 NETO2Q8NC67 525 aa12.64□□□□□ -0.39
SMPD4-213ENST00000454468 CHMP6Q96FZ7 201 aa12.64□□□□□ -0.39
SMPD4-213ENST00000454468 SEC16BQ96JE7 1060 aa12.64□□□□□ -0.39
SMPD4-213ENST00000454468 FAM167AQ96KS9 214 aa12.64□□□□□ -0.39
SMPD4-213ENST00000454468 ST6GALNAC4Q9H4F1 302 aa12.64□□□□□ -0.39
SMPD4-213ENST00000454468 SMYD3Q9H7B4 428 aa12.64□□□□□ -0.39
SMPD4-213ENST00000454468 FGFR1OP2Q9NVK5 253 aa12.64□□□□□ -0.39
SMPD4-213ENST00000454468 BAIAP2L1Q9UHR4 511 aa12.64□□□□□ -0.39
SMPD4-213ENST00000454468 DYNC1LI2O43237 492 aaPredicted RBP12.64□□□□□ -0.39
SMPD4-213ENST00000454468 FAM107AO95990 144 aa12.64□□□□□ -0.39
SMPD4-213ENST00000454468 STAG3L1P0CL83 205 aa12.64□□□□□ -0.39
SMPD4-213ENST00000454468 RFC5P40937 340 aa12.64□□□□□ -0.39
SMPD4-213ENST00000454468 IFRD2Q12894 506 aaPredicted RBP12.64□□□□□ -0.39
SMPD4-213ENST00000454468 PPP2R5DQ14738 602 aa12.64□□□□□ -0.39
SMPD4-213ENST00000454468 ZDHHC24Q6UX98 284 aa12.64□□□□□ -0.39
SMPD4-213ENST00000454468 CCDC197Q8NCU1 140 aa12.64□□□□□ -0.39
SMPD4-213ENST00000454468 TFAP2BQ92481 460 aa12.64□□□□□ -0.39
SMPD4-213ENST00000454468 DCLK3Q9C098 648 aa12.64□□□□□ -0.39
SMPD4-213ENST00000454468 NSRP1Q9H0G5 558 aaKnown RBP12.64□□□□□ -0.39
SMPD4-213ENST00000454468 MINDY3Q9H8M7 445 aa12.64□□□□□ -0.39
SMPD4-213ENST00000454468 GINM1Q9NU53 330 aa12.64□□□□□ -0.39
SMPD4-213ENST00000454468 GRHL1Q9NZI5 618 aa12.64□□□□□ -0.39
SMPD4-213ENST00000454468 NEU2Q9Y3R4 380 aa12.64□□□□□ -0.39
SMPD4-213ENST00000454468 ZNF831Q5JPB2 1677 aa12.64□□□□□ -0.39
SMPD4-213ENST00000454468 MYPNQ86TC9 1320 aa12.64□□□□□ -0.39
SMPD4-213ENST00000454468 MEFVO15553 781 aaPredicted RBP12.64□□□□□ -0.39
SMPD4-213ENST00000454468 CALB1P05937 261 aa12.64□□□□□ -0.39
SMPD4-213ENST00000454468 ADORA2BP29275 332 aa12.64□□□□□ -0.39
SMPD4-213ENST00000454468 PTGIRP43119 386 aa12.64□□□□□ -0.39
SMPD4-213ENST00000454468 CDH6P55285 790 aa12.64□□□□□ -0.39
SMPD4-213ENST00000454468 ERO1BQ86YB8 467 aa12.64□□□□□ -0.39
SMPD4-213ENST00000454468 MREGQ8N565 214 aa12.64□□□□□ -0.39
SMPD4-213ENST00000454468 PCYT2Q99447 389 aa12.64□□□□□ -0.39
SMPD4-213ENST00000454468 SMARCAD1Q9H4L7 1026 aa12.64□□□□□ -0.39
SMPD4-213ENST00000454468 MRPL42Q9Y6G3 142 aaKnown RBP12.64□□□□□ -0.39
SMPD4-213ENST00000454468 C10orf71Q711Q0 1435 aa12.63□□□□□ -0.39
SMPD4-213ENST00000454468 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.63□□□□□ -0.39
SMPD4-213ENST00000454468 PHKA2P46019 1235 aa12.63□□□□□ -0.39
SMPD4-213ENST00000454468 PRAMEF19Q5SWL8 479 aa12.63□□□□□ -0.39
SMPD4-213ENST00000454468 CASC4Q6P4E1 433 aa12.63□□□□□ -0.39
SMPD4-213ENST00000454468 ARMC9Q7Z3E5 817 aa12.63□□□□□ -0.39
SMPD4-213ENST00000454468 C12orf29Q8N999 325 aa12.63□□□□□ -0.39
SMPD4-213ENST00000454468 GLIS1Q8NBF1 620 aa12.63□□□□□ -0.39
SMPD4-213ENST00000454468 REPS2Q8NFH8 660 aa12.63□□□□□ -0.39
SMPD4-213ENST00000454468 MORC4Q8TE76 937 aa12.63□□□□□ -0.39
SMPD4-213ENST00000454468 DDX1Q92499 740 aaKnown RBP12.63□□□□□ -0.39
SMPD4-213ENST00000454468 SYT11Q9BT88 431 aa12.63□□□□□ -0.39
SMPD4-213ENST00000454468 YY1AP1Q9H869 796 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms