RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 ANAPC1Q9H1A4 1944 aa12.99□□□□□ -0.33
USP40-210ENST00000454354 F5P12259 2224 aa12.98□□□□□ -0.33
USP40-210ENST00000454354 ZFHX2Q9C0A1 2572 aaPredicted RBP12.98□□□□□ -0.33
USP40-210ENST00000454354 HELZP42694 1942 aaKnown RBP12.98□□□□□ -0.33
USP40-210ENST00000454354 ZNF233A6NK53 670 aa12.98□□□□□ -0.33
USP40-210ENST00000454354 NRG2O14511 850 aaPredicted RBP12.98□□□□□ -0.33
USP40-210ENST00000454354 ITGB3P05106 788 aa12.98□□□□□ -0.33
USP40-210ENST00000454354 CASP1P29466 404 aa12.98□□□□□ -0.33
USP40-210ENST00000454354 GPC5P78333 572 aa12.98□□□□□ -0.33
USP40-210ENST00000454354 KRT85P78386 507 aa12.98□□□□□ -0.33
USP40-210ENST00000454354 SMARCB1Q12824 385 aa12.98□□□□□ -0.33
USP40-210ENST00000454354 DUSP4Q13115 394 aa12.98□□□□□ -0.33
USP40-210ENST00000454354 CUL4BQ13620 913 aa12.98□□□□□ -0.33
USP40-210ENST00000454354 SURF1Q15526 300 aa12.98□□□□□ -0.33
USP40-210ENST00000454354 SLC39A12Q504Y0 691 aa12.98□□□□□ -0.33
USP40-210ENST00000454354 CYP4A22Q5TCH4 519 aa12.98□□□□□ -0.33
USP40-210ENST00000454354 PHLDB3Q6NSJ2 640 aa12.98□□□□□ -0.33
USP40-210ENST00000454354 TMC8Q8IU68 726 aa12.98□□□□□ -0.33
USP40-210ENST00000454354 CBWD2Q8IUF1 395 aa12.98□□□□□ -0.33
USP40-210ENST00000454354 CEP57L1Q8IYX8 460 aa12.98□□□□□ -0.33
USP40-210ENST00000454354 HS6ST3Q8IZP7 471 aa12.98□□□□□ -0.33
USP40-210ENST00000454354 FLCNQ8NFG4 579 aa12.98□□□□□ -0.33
USP40-210ENST00000454354 ST13P5Q8NFI4 369 aaPredicted RBP12.98□□□□□ -0.33
USP40-210ENST00000454354 C2orf15Q8WU43 125 aaKnown RBP12.98□□□□□ -0.33
USP40-210ENST00000454354 LEO1Q8WVC0 666 aaPredicted RBP12.98□□□□□ -0.33
USP40-210ENST00000454354 ELSPBP1Q96BH3 223 aa12.98□□□□□ -0.33
USP40-210ENST00000454354 MCRS1Q96EZ8 462 aa12.98□□□□□ -0.33
USP40-210ENST00000454354 KXD1Q9BQD3 176 aa12.98□□□□□ -0.33
USP40-210ENST00000454354 MTMR12Q9C0I1 747 aa12.98□□□□□ -0.33
USP40-210ENST00000454354 IRF2BPLQ9H1B7 796 aa12.98□□□□□ -0.33
USP40-210ENST00000454354 BLZF1Q9H2G9 400 aa12.98□□□□□ -0.33
USP40-210ENST00000454354 ARHGEF3Q9NR81 526 aa12.98□□□□□ -0.33
USP40-210ENST00000454354 AGPAT3Q9NRZ7 376 aa12.98□□□□□ -0.33
USP40-210ENST00000454354 GDAP2Q9NXN4 497 aa12.98□□□□□ -0.33
USP40-210ENST00000454354 SIX4Q9UIU6 781 aa12.98□□□□□ -0.33
USP40-210ENST00000454354 AGAP1Q9UPQ3 857 aa12.98□□□□□ -0.33
USP40-210ENST00000454354 HPSEQ9Y251 543 aa12.98□□□□□ -0.33
USP40-210ENST00000454354 ASB3Q9Y575 518 aa12.98□□□□□ -0.33
USP40-210ENST00000454354 CACNA1IQ9P0X4 2223 aa12.98□□□□□ -0.33
USP40-210ENST00000454354 PTPRJQ12913 1337 aa12.97□□□□□ -0.33
USP40-210ENST00000454354 FAM237AA0A1B0GTK4 181 aa12.97□□□□□ -0.33
USP40-210ENST00000454354 PI15O43692 258 aa12.97□□□□□ -0.33
USP40-210ENST00000454354 KLRC4O43908 158 aa12.97□□□□□ -0.33
USP40-210ENST00000454354 TMEM191BP0C7N4 346 aa12.97□□□□□ -0.33
USP40-210ENST00000454354 PFKFB1P16118 471 aa12.97□□□□□ -0.33
USP40-210ENST00000454354 CMA1P23946 247 aa12.97□□□□□ -0.33
USP40-210ENST00000454354 AFMP43652 599 aa12.97□□□□□ -0.33
USP40-210ENST00000454354 ALDH1A3P47895 512 aa12.97□□□□□ -0.33
USP40-210ENST00000454354 EPHB3P54753 998 aa12.97□□□□□ -0.33
USP40-210ENST00000454354 WSCD1Q658N2 575 aa12.97□□□□□ -0.33
USP40-210ENST00000454354 C12orf56Q8IXR9 622 aa12.97□□□□□ -0.33
USP40-210ENST00000454354 CCDC105Q8IYK2 499 aa12.97□□□□□ -0.33
USP40-210ENST00000454354 GRAMD1CQ8IYS0 662 aa12.97□□□□□ -0.33
USP40-210ENST00000454354 THEM5Q8N1Q8 247 aa12.97□□□□□ -0.33
USP40-210ENST00000454354 TMEM86AQ8N2M4 240 aa12.97□□□□□ -0.33
USP40-210ENST00000454354 TTC9BQ8N6N2 239 aa12.97□□□□□ -0.33
USP40-210ENST00000454354 ATAD1Q8NBU5 361 aa12.97□□□□□ -0.33
USP40-210ENST00000454354 SPATA18Q8TC71 538 aa12.97□□□□□ -0.33
USP40-210ENST00000454354 SPPL2BQ8TCT7 592 aa12.97□□□□□ -0.33
USP40-210ENST00000454354 PSMG2Q969U7 264 aa12.97□□□□□ -0.33
USP40-210ENST00000454354 ANKRD36BP1Q96IX9 119 aa12.97□□□□□ -0.33
USP40-210ENST00000454354 FAM84AQ96KN4 292 aa12.97□□□□□ -0.33
USP40-210ENST00000454354 SPATA32Q96LK8 384 aa12.97□□□□□ -0.33
USP40-210ENST00000454354 ASB16Q96NS5 453 aa12.97□□□□□ -0.33
USP40-210ENST00000454354 TBC1D17Q9HA65 648 aa12.97□□□□□ -0.33
USP40-210ENST00000454354 INTS13Q9NVM9 706 aa12.97□□□□□ -0.33
USP40-210ENST00000454354 CGNQ9P2M7 1197 aaKnown RBP12.97□□□□□ -0.33
USP40-210ENST00000454354 USP25Q9UHP3 1055 aa12.97□□□□□ -0.33
USP40-210ENST00000454354 SERTAD1Q9UHV2 236 aa12.97□□□□□ -0.33
USP40-210ENST00000454354 L1RE1Q9UN81 338 aa12.97□□□□□ -0.33
USP40-210ENST00000454354 A0A1B0GVL5 298 aa12.96□□□□□ -0.33
USP40-210ENST00000454354 HUS1O60921 280 aa12.96□□□□□ -0.33
USP40-210ENST00000454354 MYL1P05976 194 aa12.96□□□□□ -0.33
USP40-210ENST00000454354 MYL4P12829 197 aa12.96□□□□□ -0.33
USP40-210ENST00000454354 STARD6P59095 220 aa12.96□□□□□ -0.33
USP40-210ENST00000454354 RBP5P82980 135 aa12.96□□□□□ -0.33
USP40-210ENST00000454354 PFKPQ01813 784 aa12.96□□□□□ -0.33
USP40-210ENST00000454354 SNRNP35Q16560 246 aaKnown RBP12.96□□□□□ -0.33
USP40-210ENST00000454354 FAM78AQ5JUQ0 283 aa12.96□□□□□ -0.33
USP40-210ENST00000454354 SCARA3Q6AZY7 606 aa12.96□□□□□ -0.33
USP40-210ENST00000454354 TANGO2Q6ICL3 276 aa12.96□□□□□ -0.33
USP40-210ENST00000454354 LIMS2Q7Z4I7 341 aa12.96□□□□□ -0.33
USP40-210ENST00000454354 LRRTM3Q86VH5 581 aa12.96□□□□□ -0.33
USP40-210ENST00000454354 WDR49Q8IV35 697 aa12.96□□□□□ -0.33
USP40-210ENST00000454354 DCP1BQ8IZD4 617 aaKnown RBP12.96□□□□□ -0.33
USP40-210ENST00000454354 PDCL2Q8N4E4 241 aa12.96□□□□□ -0.33
USP40-210ENST00000454354 CSGALNACT2Q8N6G5 542 aa12.96□□□□□ -0.33
USP40-210ENST00000454354 TOP6BLQ8N6T0 577 aa12.96□□□□□ -0.33
USP40-210ENST00000454354 OR5B17Q8NGF7 314 aa12.96□□□□□ -0.33
USP40-210ENST00000454354 SHKBP1Q8TBC3 707 aa12.96□□□□□ -0.33
USP40-210ENST00000454354 NOC3LQ8WTT2 800 aaKnown RBP12.96□□□□□ -0.33
USP40-210ENST00000454354 PAGE5Q96GU1 130 aa12.96□□□□□ -0.33
USP40-210ENST00000454354 DDX23Q9BUQ8 820 aaKnown RBP12.96□□□□□ -0.33
USP40-210ENST00000454354 GPR88Q9GZN0 384 aa12.96□□□□□ -0.33
USP40-210ENST00000454354 TRPV4Q9HBA0 871 aa12.96□□□□□ -0.33
USP40-210ENST00000454354 SLC39A2Q9NP94 309 aa12.96□□□□□ -0.33
USP40-210ENST00000454354 SLC27A5Q9Y2P5 690 aa12.96□□□□□ -0.33
USP40-210ENST00000454354 ATP6V1DQ9Y5K8 247 aa12.96□□□□□ -0.33
USP40-210ENST00000454354 ZNF292O60281 2723 aa12.96□□□□□ -0.34
USP40-210ENST00000454354 RIF1Q5UIP0 2472 aaKnown RBP12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms