RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 GRIK4Q16099 956 aa12.92□□□□□ -0.34
TCOF1-205ENST00000439160 RNF180Q86T96 592 aa12.92□□□□□ -0.34
TCOF1-205ENST00000439160 WDR49Q8IV35 697 aa12.92□□□□□ -0.34
TCOF1-205ENST00000439160 MAP4K3Q8IVH8 894 aa12.92□□□□□ -0.34
TCOF1-205ENST00000439160 USP33Q8TEY7 942 aa12.92□□□□□ -0.34
TCOF1-205ENST00000439160 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.92□□□□□ -0.34
TCOF1-205ENST00000439160 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.92□□□□□ -0.343e-9■■■■■ 78.5
TCOF1-205ENST00000439160 KLRG1Q96E93 195 aa12.92□□□□□ -0.34
TCOF1-205ENST00000439160 ZIM3Q96PE6 472 aa12.92□□□□□ -0.34
TCOF1-205ENST00000439160 DNAJC18Q9H819 358 aa12.92□□□□□ -0.34
TCOF1-205ENST00000439160 DCTN4Q9UJW0 460 aa12.92□□□□□ -0.34
TCOF1-205ENST00000439160 KCPQ6ZWJ8 1503 aa12.91□□□□□ -0.34
TCOF1-205ENST00000439160 ASTN2O75129 1339 aaPredicted RBP12.91□□□□□ -0.34
TCOF1-205ENST00000439160 NCF2P19878 526 aaPredicted RBP12.91□□□□□ -0.34
TCOF1-205ENST00000439160 ACO1P21399 889 aaKnown RBP12.91□□□□□ -0.34
TCOF1-205ENST00000439160 SERPINB6P35237 376 aa12.91□□□□□ -0.34
TCOF1-205ENST00000439160 RIOX2Q8IUF8 465 aa12.91□□□□□ -0.34
TCOF1-205ENST00000439160 TRIM56Q9BRZ2 755 aaKnown RBP12.91□□□□□ -0.34
TCOF1-205ENST00000439160 ISCUQ9H1K1 167 aa12.91□□□□□ -0.34
TCOF1-205ENST00000439160 VIPAS39Q9H9C1 493 aa12.91□□□□□ -0.34
TCOF1-205ENST00000439160 ALG13Q9NP73 1137 aaKnown RBP12.91□□□□□ -0.34
TCOF1-205ENST00000439160 ACP6Q9NPH0 428 aa12.91□□□□□ -0.34
TCOF1-205ENST00000439160 ITGA8P53708 1063 aa12.91□□□□□ -0.34
TCOF1-205ENST00000439160 ITPRIPL1Q6GPH6 555 aa12.91□□□□□ -0.34
TCOF1-205ENST00000439160 USP50Q70EL3 339 aaPredicted RBP12.91□□□□□ -0.34
TCOF1-205ENST00000439160 LMNTD2Q8IXW0 634 aa12.91□□□□□ -0.34
TCOF1-205ENST00000439160 DNAJB3Q8WWF6 145 aa12.91□□□□□ -0.34
TCOF1-205ENST00000439160 IFT43Q96FT9 208 aa12.91□□□□□ -0.34
TCOF1-205ENST00000439160 RSAD1Q9HA92 442 aa12.91□□□□□ -0.34
TCOF1-205ENST00000439160 FAM200BP0CF97 657 aa12.91□□□□□ -0.34
TCOF1-205ENST00000439160 NCAM1P13591 858 aa12.91□□□□□ -0.34
TCOF1-205ENST00000439160 PLA2G4AP47712 749 aa12.91□□□□□ -0.34
TCOF1-205ENST00000439160 KPNA2P52292 529 aaKnown RBP12.91□□□□□ -0.34
TCOF1-205ENST00000439160 GJC2Q5T442 439 aaPredicted RBP12.91□□□□□ -0.34
TCOF1-205ENST00000439160 ATG16L1Q676U5 607 aa12.91□□□□□ -0.34
TCOF1-205ENST00000439160 SYDE1Q6ZW31 735 aaPredicted RBP12.91□□□□□ -0.34
TCOF1-205ENST00000439160 IKZF4Q9H2S9 585 aa12.91□□□□□ -0.34
TCOF1-205ENST00000439160 RIPK3Q9Y572 518 aa12.91□□□□□ -0.34
TCOF1-205ENST00000439160 PAMP19021 973 aa12.9□□□□□ -0.34
TCOF1-205ENST00000439160 PNPLA4P41247 253 aa12.9□□□□□ -0.34
TCOF1-205ENST00000439160 ITGB3BPQ13352 177 aaPredicted RBP12.9□□□□□ -0.34
TCOF1-205ENST00000439160 MIIPQ5JXC2 388 aa12.9□□□□□ -0.34
TCOF1-205ENST00000439160 SPATA20Q8TB22 786 aa12.9□□□□□ -0.34
TCOF1-205ENST00000439160 RUBCNQ92622 972 aa12.9□□□□□ -0.34
TCOF1-205ENST00000439160 ARHGEF26Q96DR7 871 aa12.9□□□□□ -0.34
TCOF1-205ENST00000439160 TTC1Q99614 292 aa12.9□□□□□ -0.34
TCOF1-205ENST00000439160 SNTG2Q9NY99 539 aa12.9□□□□□ -0.34
TCOF1-205ENST00000439160 TPX2Q9ULW0 747 aaKnown RBP12.9□□□□□ -0.34
TCOF1-205ENST00000439160 PDE4DIPQ5VU43 2346 aa12.9□□□□□ -0.34
TCOF1-205ENST00000439160 LRRIQ3A6PVS8 624 aaPredicted RBP12.9□□□□□ -0.34
TCOF1-205ENST00000439160 MAPK7Q13164 816 aa12.9□□□□□ -0.34
TCOF1-205ENST00000439160 SLC12A1Q13621 1099 aa12.9□□□□□ -0.34
TCOF1-205ENST00000439160 STAT4Q14765 748 aa12.9□□□□□ -0.34
TCOF1-205ENST00000439160 FAM71DQ8N9W8 422 aa12.9□□□□□ -0.34
TCOF1-205ENST00000439160 ZNF606Q8WXB4 792 aa12.9□□□□□ -0.34
TCOF1-205ENST00000439160 SEPT5Q99719 369 aaPredicted RBP12.9□□□□□ -0.34
TCOF1-205ENST00000439160 TRIM55Q9BYV6 548 aa12.9□□□□□ -0.34
TCOF1-205ENST00000439160 TJP2Q9UDY2 1190 aa12.9□□□□□ -0.34
TCOF1-205ENST00000439160 CHMP2BQ9UQN3 213 aa12.9□□□□□ -0.34
TCOF1-205ENST00000439160 CCDC195A0A1B0GUA6 201 aa12.9□□□□□ -0.34
TCOF1-205ENST00000439160 ACKR2O00590 384 aa12.9□□□□□ -0.34
TCOF1-205ENST00000439160 S100BP04271 92 aaPredicted RBP12.9□□□□□ -0.34
TCOF1-205ENST00000439160 PRLRP16471 622 aa12.9□□□□□ -0.34
TCOF1-205ENST00000439160 CRLF3Q8IUI8 442 aa12.9□□□□□ -0.34
TCOF1-205ENST00000439160 VCX3BQ9H321 246 aa12.9□□□□□ -0.34
TCOF1-205ENST00000439160 RNF19AQ9NV58 838 aa12.9□□□□□ -0.34
TCOF1-205ENST00000439160 ZFATQ9P243 1243 aa12.9□□□□□ -0.34
TCOF1-205ENST00000439160 XPO7Q9UIA9 1087 aaKnown RBP12.9□□□□□ -0.34
TCOF1-205ENST00000439160 PARP4Q9UKK3 1724 aaKnown RBP12.9□□□□□ -0.34
TCOF1-205ENST00000439160 ASTN1O14525 1302 aa12.9□□□□□ -0.34
TCOF1-205ENST00000439160 HSPA4LO95757 839 aa12.9□□□□□ -0.34
TCOF1-205ENST00000439160 KITP10721 976 aa12.9□□□□□ -0.34
TCOF1-205ENST00000439160 AKAP5P24588 427 aa12.9□□□□□ -0.34
TCOF1-205ENST00000439160 TYK2P29597 1187 aa12.9□□□□□ -0.34
TCOF1-205ENST00000439160 ACADSBP45954 432 aa12.9□□□□□ -0.34
TCOF1-205ENST00000439160 CDH8P55286 799 aa12.9□□□□□ -0.34
TCOF1-205ENST00000439160 PTPN11Q06124 597 aaPredicted RBP12.9□□□□□ -0.34
TCOF1-205ENST00000439160 SLC29A2Q14542 456 aa12.9□□□□□ -0.34
TCOF1-205ENST00000439160 VEPH1Q14D04 833 aa12.9□□□□□ -0.34
TCOF1-205ENST00000439160 MEA1Q16626 185 aa12.9□□□□□ -0.34
TCOF1-205ENST00000439160 MGAT5BQ3V5L5 792 aa12.9□□□□□ -0.34
TCOF1-205ENST00000439160 ARSHQ5FYA8 562 aa12.9□□□□□ -0.34
TCOF1-205ENST00000439160 MEI1Q5TIA1 1274 aa12.9□□□□□ -0.34
TCOF1-205ENST00000439160 TBC1D1Q86TI0 1168 aaPredicted RBP12.9□□□□□ -0.34
TCOF1-205ENST00000439160 PDCD7Q8N8D1 485 aaKnown RBP12.9□□□□□ -0.34
TCOF1-205ENST00000439160 CASKIN2Q8WXE0 1202 aa12.9□□□□□ -0.34
TCOF1-205ENST00000439160 RAPGEF5Q92565 580 aa12.9□□□□□ -0.34
TCOF1-205ENST00000439160 TGS1Q96RS0 853 aaKnown RBP12.9□□□□□ -0.34
TCOF1-205ENST00000439160 TRIM62Q9BVG3 475 aa12.9□□□□□ -0.34
TCOF1-205ENST00000439160 FRMD3A2A2Y4 597 aa12.89□□□□□ -0.35
TCOF1-205ENST00000439160 PEX10O60683 326 aa12.89□□□□□ -0.35
TCOF1-205ENST00000439160 CDH16O75309 829 aa12.89□□□□□ -0.35
TCOF1-205ENST00000439160 VDRP11473 427 aa12.89□□□□□ -0.35
TCOF1-205ENST00000439160 MAGEA9P43362 315 aa12.89□□□□□ -0.35
TCOF1-205ENST00000439160 POU5F1BQ06416 359 aa12.89□□□□□ -0.35
TCOF1-205ENST00000439160 UGCGQ16739 394 aa12.89□□□□□ -0.35
TCOF1-205ENST00000439160 MUM1Q2TAK8 710 aa12.89□□□□□ -0.35
TCOF1-205ENST00000439160 EFHC1Q5JVL4 640 aa12.89□□□□□ -0.35
TCOF1-205ENST00000439160 NLRP14Q86W24 1093 aa12.89□□□□□ -0.35
TCOF1-205ENST00000439160 ASAP3Q8TDY4 903 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms