RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 TUBGCP4Q9UGJ1 667 aa8.44□□□□□ -1.06
VPS50-204ENST00000438395 AFF4Q9UHB7 1163 aaKnown RBP8.44□□□□□ -1.06
VPS50-204ENST00000438395 FBXO4Q9UKT5 387 aa8.44□□□□□ -1.06
VPS50-204ENST00000438395 ODF2LQ9ULJ1 636 aa8.44□□□□□ -1.06
VPS50-204ENST00000438395 UBQLN1Q9UMX0 589 aaKnown RBP8.44□□□□□ -1.06
VPS50-204ENST00000438395 SMC3Q9UQE7 1217 aa8.44□□□□□ -1.06
VPS50-204ENST00000438395 OTOGLQ3ZCN5 2332 aa8.44□□□□□ -1.06
VPS50-204ENST00000438395 DOCK8Q8NF50 2099 aa8.43□□□□□ -1.06
VPS50-204ENST00000438395 OR6C75A6NL08 312 aa8.43□□□□□ -1.06
VPS50-204ENST00000438395 CAPN5O15484 640 aaPredicted RBP8.43□□□□□ -1.06
VPS50-204ENST00000438395 SLC26A4O43511 780 aa8.43□□□□□ -1.06
VPS50-204ENST00000438395 LRRN2O75325 713 aa8.43□□□□□ -1.06
VPS50-204ENST00000438395 MICAL2O94851 1124 aa8.43□□□□□ -1.06
VPS50-204ENST00000438395 ABLIM3O94929 683 aa8.43□□□□□ -1.06
VPS50-204ENST00000438395 ODC1P11926 461 aa8.43□□□□□ -1.06
VPS50-204ENST00000438395 CD72P21854 359 aa8.43□□□□□ -1.06
VPS50-204ENST00000438395 IGFBP6P24592 240 aaPredicted RBP8.43□□□□□ -1.06
VPS50-204ENST00000438395 ALDH1A3P47895 512 aa8.43□□□□□ -1.06
VPS50-204ENST00000438395 MCM2P49736 904 aa8.43□□□□□ -1.06
VPS50-204ENST00000438395 EPHB3P54753 998 aa8.43□□□□□ -1.06
VPS50-204ENST00000438395 TWF1Q12792 350 aa8.43□□□□□ -1.06
VPS50-204ENST00000438395 NNTQ13423 1086 aa8.43□□□□□ -1.06
VPS50-204ENST00000438395 GRM2Q14416 872 aa8.43□□□□□ -1.06
VPS50-204ENST00000438395 TAF12Q16514 161 aa8.43□□□□□ -1.06
VPS50-204ENST00000438395 ZNF528Q3MIS6 628 aa8.43□□□□□ -1.06
VPS50-204ENST00000438395 FAM78AQ5JUQ0 283 aa8.43□□□□□ -1.06
VPS50-204ENST00000438395 HAUS6Q7Z4H7 955 aa8.43□□□□□ -1.06
VPS50-204ENST00000438395 TRIM46Q7Z4K8 759 aa8.43□□□□□ -1.06
VPS50-204ENST00000438395 MYCT1Q8N699 235 aa8.43□□□□□ -1.06
VPS50-204ENST00000438395 SYT2Q8N9I0 419 aaPredicted RBP8.43□□□□□ -1.06
VPS50-204ENST00000438395 BEST2Q8NFU1 509 aa8.43□□□□□ -1.06
VPS50-204ENST00000438395 LRRN4Q8WUT4 740 aa8.43□□□□□ -1.06
VPS50-204ENST00000438395 DEPDC1BQ8WUY9 529 aa8.43□□□□□ -1.06
VPS50-204ENST00000438395 SMARCD2Q92925 531 aa8.43□□□□□ -1.06
VPS50-204ENST00000438395 E2F7Q96AV8 911 aa8.43□□□□□ -1.06
VPS50-204ENST00000438395 ZBTB45Q96K62 511 aaPredicted RBP8.43□□□□□ -1.06
VPS50-204ENST00000438395 GCNAQ96QF7 691 aa8.43□□□□□ -1.06
VPS50-204ENST00000438395 NTPCRQ9BSD7 190 aaKnown RBP8.43□□□□□ -1.06
VPS50-204ENST00000438395 MMTAG2Q9BU76 263 aaKnown RBP8.43□□□□□ -1.06
VPS50-204ENST00000438395 MSTO1Q9BUK6 570 aa8.43□□□□□ -1.06
VPS50-204ENST00000438395 DDX23Q9BUQ8 820 aaKnown RBP8.43□□□□□ -1.06
VPS50-204ENST00000438395 PARVGQ9HBI0 331 aa8.43□□□□□ -1.06
VPS50-204ENST00000438395 HEBP1Q9NRV9 189 aa8.43□□□□□ -1.06
VPS50-204ENST00000438395 DLGAP2Q9P1A6 1054 aa8.43□□□□□ -1.06
VPS50-204ENST00000438395 RAB23Q9ULC3 237 aa8.43□□□□□ -1.06
VPS50-204ENST00000438395 NDRG2Q9UN36 371 aaKnown RBP8.43□□□□□ -1.06
VPS50-204ENST00000438395 YIPF1Q9Y548 306 aa8.43□□□□□ -1.06
VPS50-204ENST00000438395 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.43□□□□□ -1.06
VPS50-204ENST00000438395 PCDHGA2Q9Y5H1 932 aa8.43□□□□□ -1.06
VPS50-204ENST00000438395 F5P12259 2224 aa8.42□□□□□ -1.06
VPS50-204ENST00000438395 ABLIM1O14639 778 aa8.42□□□□□ -1.06
VPS50-204ENST00000438395 ZNF263O14978 683 aa8.42□□□□□ -1.06
VPS50-204ENST00000438395 OGTO15294 1046 aa8.42□□□□□ -1.06
VPS50-204ENST00000438395 SEC24AO95486 1093 aa8.42□□□□□ -1.06
VPS50-204ENST00000438395 FGF19O95750 216 aa8.42□□□□□ -1.06
VPS50-204ENST00000438395 GLULP15104 373 aa8.42□□□□□ -1.06
VPS50-204ENST00000438395 PSMC3P17980 439 aa8.42□□□□□ -1.06
VPS50-204ENST00000438395 PAX3P23760 479 aa8.42□□□□□ -1.06
VPS50-204ENST00000438395 TARSP26639 723 aaKnown RBP8.42□□□□□ -1.06
VPS50-204ENST00000438395 GJB2P29033 226 aa8.42□□□□□ -1.06
VPS50-204ENST00000438395 GDI1P31150 447 aa8.42□□□□□ -1.06
VPS50-204ENST00000438395 RPS9P46781 194 aaKnown RBP8.42□□□□□ -1.06
VPS50-204ENST00000438395 KPNA1P52294 538 aaPredicted RBP8.42□□□□□ -1.06
VPS50-204ENST00000438395 SLC12A3P55017 1021 aa8.42□□□□□ -1.06
VPS50-204ENST00000438395 NCKAP1LP55160 1127 aa8.42□□□□□ -1.06
VPS50-204ENST00000438395 SPAG1Q07617 926 aa8.42□□□□□ -1.06
VPS50-204ENST00000438395 VEPH1Q14D04 833 aa8.42□□□□□ -1.06
VPS50-204ENST00000438395 IL17AQ16552 155 aa8.42□□□□□ -1.06
VPS50-204ENST00000438395 SLC10A6Q3KNW5 377 aa8.42□□□□□ -1.06
VPS50-204ENST00000438395 TMEM119Q4V9L6 283 aa8.42□□□□□ -1.06
VPS50-204ENST00000438395 ARHGAP15Q53QZ3 475 aa8.42□□□□□ -1.06
VPS50-204ENST00000438395 HYIQ5T013 277 aa8.42□□□□□ -1.06
VPS50-204ENST00000438395 TANGO2Q6ICL3 276 aa8.42□□□□□ -1.06
VPS50-204ENST00000438395 OVOS1Q6IE37 1185 aa8.42□□□□□ -1.06
VPS50-204ENST00000438395 CD300LGQ6UXG3 332 aa8.42□□□□□ -1.06
VPS50-204ENST00000438395 DGLUCYQ7Z3D6 616 aa8.42□□□□□ -1.06
VPS50-204ENST00000438395 ITIH5Q86UX2 942 aa8.42□□□□□ -1.06
VPS50-204ENST00000438395 ZSCAN18Q8TBC5 510 aaPredicted RBP8.42□□□□□ -1.06
VPS50-204ENST00000438395 FAM174AQ8TBP5 190 aa8.42□□□□□ -1.06
VPS50-204ENST00000438395 CSGALNACT1Q8TDX6 532 aa8.42□□□□□ -1.06
VPS50-204ENST00000438395 TCEAL4Q96EI5 215 aa8.42□□□□□ -1.06
VPS50-204ENST00000438395 BORCS6Q96GS4 357 aa8.42□□□□□ -1.06
VPS50-204ENST00000438395 TMX3Q96JJ7 454 aa8.42□□□□□ -1.06
VPS50-204ENST00000438395 ASB16Q96NS5 453 aa8.42□□□□□ -1.06
VPS50-204ENST00000438395 PGLYRP2Q96PD5 576 aa8.42□□□□□ -1.06
VPS50-204ENST00000438395 TSPAN18Q96SJ8 248 aa8.42□□□□□ -1.06
VPS50-204ENST00000438395 REEP2Q9BRK0 252 aa8.42□□□□□ -1.06
VPS50-204ENST00000438395 IER2Q9BTL4 223 aa8.42□□□□□ -1.06
VPS50-204ENST00000438395 GPR88Q9GZN0 384 aa8.42□□□□□ -1.06
VPS50-204ENST00000438395 ZSCAN32Q9NX65 697 aa8.42□□□□□ -1.06
VPS50-204ENST00000438395 GMEB2Q9UKD1 530 aa8.42□□□□□ -1.06
VPS50-204ENST00000438395 SMG5Q9UPR3 1016 aaKnown RBP8.42□□□□□ -1.06
VPS50-204ENST00000438395 TIMM13Q9Y5L4 95 aaPredicted RBP8.42□□□□□ -1.06
VPS50-204ENST00000438395 PIAS3Q9Y6X2 628 aa8.42□□□□□ -1.06
VPS50-204ENST00000438395 SPTBN2O15020 2390 aa8.42□□□□□ -1.06
VPS50-204ENST00000438395 NPHP3-ACAD11A0A0J9YXS1 232 aa8.41□□□□□ -1.06
VPS50-204ENST00000438395 TTC26A0AVF1 554 aa8.41□□□□□ -1.06
VPS50-204ENST00000438395 VPS37CA5D8V6 355 aaPredicted RBP8.41□□□□□ -1.06
VPS50-204ENST00000438395 LACTBL1A8MY62 500 aa8.41□□□□□ -1.06
VPS50-204ENST00000438395 M0QZQ0 153 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms