RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 TOP3AQ13472 1001 aaPredicted RBP4.82□□□□□ -1.64
HMGB3-203ENST00000430118 SNAPC2Q13487 334 aa4.82□□□□□ -1.64
HMGB3-203ENST00000430118 MTM1Q13496 603 aa4.82□□□□□ -1.64
HMGB3-203ENST00000430118 STARD3Q14849 445 aa4.82□□□□□ -1.64
HMGB3-203ENST00000430118 PUM3Q15397 648 aaKnown RBP4.82□□□□□ -1.64
HMGB3-203ENST00000430118 TUBB8Q3ZCM7 444 aa4.82□□□□□ -1.64
HMGB3-203ENST00000430118 SLC44A4Q53GD3 710 aa4.82□□□□□ -1.64
HMGB3-203ENST00000430118 SPTY2D1Q68D10 685 aaPredicted RBP4.82□□□□□ -1.64
HMGB3-203ENST00000430118 TRIM68Q6AZZ1 485 aa4.82□□□□□ -1.64
HMGB3-203ENST00000430118 HIBCHQ6NVY1 386 aaPredicted RBP4.82□□□□□ -1.64
HMGB3-203ENST00000430118 MMS22LQ6ZRQ5 1243 aa4.82□□□□□ -1.64
HMGB3-203ENST00000430118 BEND5Q7L4P6 421 aa4.82□□□□□ -1.64
HMGB3-203ENST00000430118 CLEC14AQ86T13 490 aa4.82□□□□□ -1.64
HMGB3-203ENST00000430118 ANKRD18AQ8IVF6 992 aa4.82□□□□□ -1.64
HMGB3-203ENST00000430118 ZNF527Q8NB42 609 aa4.82□□□□□ -1.64
HMGB3-203ENST00000430118 PIK3C3Q8NEB9 887 aa4.82□□□□□ -1.64
HMGB3-203ENST00000430118 OR6B3Q8NGW1 331 aa4.82□□□□□ -1.64
HMGB3-203ENST00000430118 SMARCC2Q8TAQ2 1214 aa4.82□□□□□ -1.64
HMGB3-203ENST00000430118 PDCD2LQ9BRP1 358 aa4.82□□□□□ -1.64
HMGB3-203ENST00000430118 C11orf84Q9BUA3 381 aaPredicted RBP4.82□□□□□ -1.64
HMGB3-203ENST00000430118 STK33Q9BYT3 514 aa4.82□□□□□ -1.64
HMGB3-203ENST00000430118 ARMT1Q9H993 441 aa4.82□□□□□ -1.64
HMGB3-203ENST00000430118 TM7SF3Q9NS93 570 aa4.82□□□□□ -1.64
HMGB3-203ENST00000430118 RLIMQ9NVW2 624 aa4.82□□□□□ -1.64
HMGB3-203ENST00000430118 MOCS1Q9NZB8 636 aa4.82□□□□□ -1.64
HMGB3-203ENST00000430118 GPRC5DQ9NZD1 345 aa4.82□□□□□ -1.64
HMGB3-203ENST00000430118 GJD2Q9UKL4 321 aa4.82□□□□□ -1.64
HMGB3-203ENST00000430118 C5P01031 1676 aa4.82□□□□□ -1.64
HMGB3-203ENST00000430118 PXDNLA1KZ92 1463 aa4.81□□□□□ -1.64
HMGB3-203ENST00000430118 COL18A1P39060 1754 aa4.81□□□□□ -1.64
HMGB3-203ENST00000430118 LY75O60449 1722 aa4.81□□□□□ -1.64
HMGB3-203ENST00000430118 DOT1LQ8TEK3 1739 aa4.81□□□□□ -1.64
HMGB3-203ENST00000430118 LRRC14BA6NHZ5 514 aa4.81□□□□□ -1.64
HMGB3-203ENST00000430118 PLA2G6O60733 806 aa4.81□□□□□ -1.64
HMGB3-203ENST00000430118 CSTBP04080 98 aaKnown RBP4.81□□□□□ -1.64
HMGB3-203ENST00000430118 AMY1AP04745 511 aa4.81□□□□□ -1.64
HMGB3-203ENST00000430118 ADSLP30566 484 aaPredicted RBP4.81□□□□□ -1.64
HMGB3-203ENST00000430118 MAN1A1P33908 653 aa4.81□□□□□ -1.64
HMGB3-203ENST00000430118 HSPA7P48741 367 aa4.81□□□□□ -1.64
HMGB3-203ENST00000430118 MAPK10P53779 464 aa4.81□□□□□ -1.64
HMGB3-203ENST00000430118 LRP8Q14114 963 aa4.81□□□□□ -1.64
HMGB3-203ENST00000430118 MPEG1Q2M385 716 aa4.81□□□□□ -1.64
HMGB3-203ENST00000430118 GAGE13Q4V321 117 aa4.81□□□□□ -1.64
HMGB3-203ENST00000430118 FLYWCH1Q4VC44 716 aa4.81□□□□□ -1.64
HMGB3-203ENST00000430118 CCDC38Q502W7 563 aa4.81□□□□□ -1.64
HMGB3-203ENST00000430118 KHDC1LQ5JSQ8 128 aa4.81□□□□□ -1.64
HMGB3-203ENST00000430118 CCDC174Q6PII3 467 aa4.81□□□□□ -1.64
HMGB3-203ENST00000430118 RFX8Q6ZV50 586 aa4.81□□□□□ -1.64
HMGB3-203ENST00000430118 SESTD1Q86VW0 696 aa4.81□□□□□ -1.64
HMGB3-203ENST00000430118 ARHGEF25Q86VW2 580 aa4.81□□□□□ -1.64
HMGB3-203ENST00000430118 SDR16C5Q8N3Y7 309 aa4.81□□□□□ -1.64
HMGB3-203ENST00000430118 CCDC33Q8N5R6 958 aa4.81□□□□□ -1.64
HMGB3-203ENST00000430118 ATP11CQ8NB49 1132 aa4.81□□□□□ -1.64
HMGB3-203ENST00000430118 IL17REQ8NFR9 667 aa4.81□□□□□ -1.64
HMGB3-203ENST00000430118 CYP2W1Q8TAV3 490 aa4.81□□□□□ -1.64
HMGB3-203ENST00000430118 TRAPPC12Q8WVT3 735 aa4.81□□□□□ -1.64
HMGB3-203ENST00000430118 MPHOSPH9Q99550 1183 aa4.81□□□□□ -1.64
HMGB3-203ENST00000430118 VRK1Q99986 396 aaPredicted RBP4.81□□□□□ -1.64
HMGB3-203ENST00000430118 GORASP1Q9BQQ3 440 aa4.81□□□□□ -1.64
HMGB3-203ENST00000430118 SENP6Q9GZR1 1112 aaPredicted RBP4.81□□□□□ -1.64
HMGB3-203ENST00000430118 MRPL46Q9H2W6 279 aaKnown RBP4.81□□□□□ -1.64
HMGB3-203ENST00000430118 JADE2Q9NQC1 790 aa4.81□□□□□ -1.64
HMGB3-203ENST00000430118 STAP2Q9UGK3 403 aa4.81□□□□□ -1.64
HMGB3-203ENST00000430118 CEP83Q9Y592 693 aa4.81□□□□□ -1.64
HMGB3-203ENST00000430118 PCDHA5Q9Y5H7 936 aa4.81□□□□□ -1.64
HMGB3-203ENST00000430118 KRTAP9-6A0A140TA67 174 aa4.8□□□□□ -1.64
HMGB3-203ENST00000430118 TRIM43BA6NCK2 446 aa4.8□□□□□ -1.64
HMGB3-203ENST00000430118 LRRC10BA6NIK2 292 aa4.8□□□□□ -1.64
HMGB3-203ENST00000430118 BIN1O00499 593 aa4.8□□□□□ -1.64
HMGB3-203ENST00000430118 HYAL3O43820 417 aaPredicted RBP4.8□□□□□ -1.64
HMGB3-203ENST00000430118 ALDH1A2O94788 518 aa4.8□□□□□ -1.64
HMGB3-203ENST00000430118 HMGCRP04035 888 aa4.8□□□□□ -1.64
HMGB3-203ENST00000430118 ANXA2P07355 339 aaKnown RBP4.8□□□□□ -1.64
HMGB3-203ENST00000430118 KITP10721 976 aa4.8□□□□□ -1.64
HMGB3-203ENST00000430118 HNRNPLP14866 589 aaKnown RBP eCLIP4.8□□□□□ -1.64
HMGB3-203ENST00000430118 SYN1P17600 705 aa4.8□□□□□ -1.64
HMGB3-203ENST00000430118 IGFBP6P24592 240 aaPredicted RBP4.8□□□□□ -1.64
HMGB3-203ENST00000430118 EEF1GP26641 437 aaKnown RBP4.8□□□□□ -1.64
HMGB3-203ENST00000430118 SSTR4P31391 388 aa4.8□□□□□ -1.64
HMGB3-203ENST00000430118 KIR2DL3P43628 341 aa4.8□□□□□ -1.64
HMGB3-203ENST00000430118 PIK3CGP48736 1102 aa4.8□□□□□ -1.64
HMGB3-203ENST00000430118 SUMO3P55854 103 aaPredicted RBP4.8□□□□□ -1.64
HMGB3-203ENST00000430118 TGFB2P61812 414 aa4.8□□□□□ -1.64
HMGB3-203ENST00000430118 PMS2P11Q13670 270 aa4.8□□□□□ -1.64
HMGB3-203ENST00000430118 HABP2Q14520 560 aaPredicted RBP4.8□□□□□ -1.64
HMGB3-203ENST00000430118 SLC35G1Q2M3R5 365 aa4.8□□□□□ -1.64
HMGB3-203ENST00000430118 ARL13BQ3SXY8 428 aa4.8□□□□□ -1.64
HMGB3-203ENST00000430118 ZNF783Q6ZMS7 281 aa4.8□□□□□ -1.64
HMGB3-203ENST00000430118 CATSPERGQ6ZRH7 1159 aa4.8□□□□□ -1.64
HMGB3-203ENST00000430118 SYDE1Q6ZW31 735 aaPredicted RBP4.8□□□□□ -1.64
HMGB3-203ENST00000430118 ZNF572Q7Z3I7 529 aaPredicted RBP4.8□□□□□ -1.64
HMGB3-203ENST00000430118 LDHDQ86WU2 507 aa4.8□□□□□ -1.64
HMGB3-203ENST00000430118 SKAP1Q86WV1 359 aa4.8□□□□□ -1.64
HMGB3-203ENST00000430118 ZSWIM9Q86XI8 627 aa4.8□□□□□ -1.64
HMGB3-203ENST00000430118 TICAM2Q86XR7 235 aa4.8□□□□□ -1.64
HMGB3-203ENST00000430118 COL23A1Q86Y22 540 aaPredicted RBP4.8□□□□□ -1.64
HMGB3-203ENST00000430118 PLXDC1Q8IUK5 500 aa4.8□□□□□ -1.64
HMGB3-203ENST00000430118 TRMT2AQ8IZ69 625 aaKnown RBP4.8□□□□□ -1.64
HMGB3-203ENST00000430118 MSL3Q8N5Y2 521 aaKnown RBP4.8□□□□□ -1.64
HMGB3-203ENST00000430118 PLA2G15Q8NCC3 412 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms